메뉴 건너뛰기




Volumn 60, Issue 8, 2010, Pages 1909-1913

Paenibacillus glacialis sp. nov., isolated from the Kafni glacier of the Himalayas, India

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINOPIMELIC ACID; ISOPRENOID; QUINONE DERIVATIVE; RNA 16S;

EID: 77955597645     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.015271-0     Document Type: Article
Times cited : (48)

References (38)
  • 1
    • 54749141609 scopus 로고    scopus 로고
    • Complete rpoB gene sequencing as a suitable supplement to DNA-DNA hybridization for bacterial species and genus delineation
    • Adékambi, T., Shinnick, T. M., Raoult, D. & Drancourt, M. (2008). Complete rpoB gene sequencing as a suitable supplement to DNA-DNA hybridization for bacterial species and genus delineation. Int J Syst Evol Microbiol 58, 1807-1814.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1807-1814
    • Adékambi, T.1    Shinnick, T.M.2    Raoult, D.3    Drancourt, M.4
  • 2
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences
    • Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
    • (1991) Lett Appl Microbiol , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 3
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus
    • Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 4
    • 40449137422 scopus 로고    scopus 로고
    • Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean
    • Bhadra, B., Raghukumar, C., Pindi, P. K. & Shivaji, S. (2008). Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean. Int J Syst Evol Microbiol 58, 57-60.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 57-60
    • Bhadra, B.1    Raghukumar, C.2    Pindi, P.K.3    Shivaji, S.4
  • 6
    • 0034609440 scopus 로고    scopus 로고
    • Characterization of the three ribosomal RNA operons rrnA, rrnB, and rrnC, from Brucella melitensis
    • Bricker, B. J. (2000). Characterization of the three ribosomal RNA operons rrnA, rrnB, and rrnC, from Brucella melitensis. Gene 255, 117-126.
    • (2000) Gene , vol.255 , pp. 117-126
    • Bricker, B.J.1
  • 7
    • 0343193322 scopus 로고    scopus 로고
    • Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound
    • Chung, Y. R., Kim, C. H., Hwang, I. & Chun, J. (2000). Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound. Int J Syst Evol Microbiol 50, 1495-1500.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1495-1500
    • Chung, Y.R.1    Kim, C.H.2    Hwang, I.3    Chun, J.4
  • 8
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia, V., Lafay, B. & Christen, R. (1996). Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol Biol Evol 13, 451-461. (Pubitemid 26066097)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.3 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 9
    • 0017682064 scopus 로고
    • Distribution of menaquinones in actinomycetes and corynebacteria
    • Collins, M. D., Pirouz, T., Goodfelow, M. & Minkin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
    • (1977) J Gen Microbiol , vol.100 , pp. 221-230
    • Collins, M.D.1    Pirouz, T.2    Goodfelow, M.3    Minkin, D.E.4
  • 10
    • 0033860832 scopus 로고    scopus 로고
    • RpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • DOI 10.1128/AEM.66.8.3376-3380.2000
    • Dahllöf, I., Baillie, H. & Kjelleberg, S. (2000). rpoB-based microbial community analysis avoids limitations inherent in 16S rDNA gene intraspecies heterogeneity. Appl Environ Microbiol 66, 3376-3380. (Pubitemid 30624579)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.8 , pp. 3376-3380
    • Dahllof, I.1    Baillie, H.2    Kjelleberg, S.3
  • 11
    • 0037358949 scopus 로고    scopus 로고
    • Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov
    • Enright, M. R., McInerney, J. O. & Griffin, C. T. (2003). Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov. Int J Syst Evol Microbiol 53, 435-441.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 435-441
    • Enright, M.R.1    McInerney, J.O.2    Griffin, C.T.3
  • 12
    • 0030870230 scopus 로고    scopus 로고
    • Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil
    • Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augusten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1129-1133
    • Groth, I.1    Schumann, P.2    Rainey, F.A.3    Martin, K.4    Schuetze, B.5    Augusten, K.6
  • 13
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 14
    • 27644501369 scopus 로고    scopus 로고
    • Paenibacillus macerans possesses two types of 16S rDNA copies in a genome with a length difference of twelve base pairs
    • DOI 10.1271/bbb.69.1995
    • Hamasaki, Y., Watanabe, Y., Kotoura, S., Fuchu, H., Sugiyama, M., Hashizume, K. & Morita, H. (2005). Paenibacillus macerans possesses two types of 16S rDNA copies in a genome with a length difference of twelve base pairs. Biosci Biotechnol Biochem 69, 1995-1998. (Pubitemid 41558871)
    • (2005) Bioscience, Biotechnology and Biochemistry , vol.69 , Issue.10 , pp. 1995-1998
    • Hamasaki, Y.1    Watanabe, Y.2    Kotoura, S.3    Fuchu, H.4    Sugiyama, M.5    Hashizume, K.6    Morita, H.7
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 18644372435 scopus 로고    scopus 로고
    • Cis-trans isomerase gene in psychrophilic Pseudomonas syringae is constitutively expressed during growth and under conditions of temperature and solvent stress
    • Kiran, M. D., Annapoorni, S., Suzuki, I., Murata, N. & Shivaji, S. (2005). Cis-trans isomerase gene in psychrophilic Pseudomonas syringae is constitutively expressed during growth and under conditions of temperature and solvent stress. Extremophiles 9, 117-125.
    • (2005) Extremophiles , vol.9 , pp. 117-125
    • Kiran, M.D.1    Annapoorni, S.2    Suzuki, I.3    Murata, N.4    Shivaji, S.5
  • 18
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
    • (1987) Methods Microbiol , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 20
    • 77956816836 scopus 로고
    • Classical and rapid identification methods for medically important bacteria
    • Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
    • (1987) Methods Microbiol , vol.19 , pp. 1-67
    • Lányí, B.1
  • 21
    • 33749020278 scopus 로고    scopus 로고
    • Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China
    • Lim, J.-M., Jeon, C. O., Lee, J.-C., Xu, L.-H., Jiang, C.-L. & Kim, C.-J. (2006). Paenibacillus gansuensis sp. nov., isolated from desert soil of Gansu Province in China. Int J Syst Evol Microbiol 56, 2131-2134.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2131-2134
    • Lim, J.-M.1    Jeon, C.O.2    Lee, J.-C.3    Xu, L.-H.4    Jiang, C.-L.5    Kim, C.-J.6
  • 22
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
    • (1961) J Mol Biol , vol.3 , pp. 208-218
    • Marmur, J.1
  • 23
    • 0013925031 scopus 로고
    • Bacillus macquariensis n.sp., a psychrotrophic bacterium from sub-Antarctic soil
    • Marshall, B. J. & Ohye, D. F. (1966). Bacillus macquariensis n.sp., a psychrotrophic bacterium from sub-Antarctic soil. J Gen Microbiol 44, 41-46.
    • (1966) J Gen Microbiol , vol.44 , pp. 41-46
    • Marshall, B.J.1    Ohye, D.F.2
  • 24
    • 0026602645 scopus 로고
    • Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui
    • Mylvaganam, S. & Dennis, P. P. (1992). Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics 130, 399-410.
    • (1992) Genetics , vol.130 , pp. 399-410
    • Mylvaganam, S.1    Dennis, P.P.2
  • 26
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R. I., Ludwig, W. & Backhaus, H. (1996). Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178, 5636-5643. (Pubitemid 26327663)
    • (1996) Journal of Bacteriology , vol.178 , Issue.19 , pp. 5636-5643
    • Nubel, U.1    Engelen, B.2    Felsre, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 27
    • 0031978459 scopus 로고    scopus 로고
    • Molecular evolution of Mycoplasma capricolum subsp. capripneumoniae strains, based on polymorphisms in the 16S rRNA genes
    • Pettersson, B., Bölske, G., Thiaucourt, F., Uhlén, M. & Johansson, K. E. (1998). Molecular evolution of Mycoplasma capricolum subsp. capripneumoniae strains, based on polymorphisms in the 16S rRNA genes. J Bacteriol 180, 2350-2358.
    • (1998) J Bacteriol , vol.180 , pp. 2350-2358
    • Pettersson, B.1    Bölske, G.2    Thiaucourt, F.3    Uhlén, M.4    Johansson, K.E.5
  • 28
    • 33846225101 scopus 로고    scopus 로고
    • Predominance of Roseobacter, Sulfitobacter, Glaciecola and Psychrobacter in seawater collected off Ushuaia, Argentina, Sub-Antarctica
    • DOI 10.1111/j.1574-6941.2006.00213.x
    • Prabagaran, S. R., Manorama, R., Delille, D. & Shivaji, S. (2007). Predominance of Roseobacter, Sulfitobacter, Glaciecola and Psychrobacter in seawater collected off Ushuaia, Argentina, Sub-Antarctica. FEMS Microbiol Ecol 59, 342-355. (Pubitemid 46105874)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.2 , pp. 342-355
    • Prabagaran, S.R.1    Manorama, R.2    Delille, D.3    Shivaji, S.4
  • 29
    • 0033858506 scopus 로고    scopus 로고
    • Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica
    • Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1553-1561
    • Reddy, G.S.N.1    Aggarwal, R.K.2    Matsumoto, G.I.3    Shivaji, S.4
  • 30
    • 2942659600 scopus 로고    scopus 로고
    • Psychrophilic pseudomonads from Antarctica: Pseudomonas antarctica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas proteolytica sp. nov
    • Reddy, G. S. N., Matsumoto, G. I., Schumann, P., Stackebrandt, E. & Shivaji, S. (2004). Psychrophilic pseudomonads from Antarctica: Pseudomonas antarctica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas proteolytica sp. nov. Int J Syst Evol Microbiol 54, 713-719.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 713-719
    • Reddy, G.S.N.1    Matsumoto, G.I.2    Schumann, P.3    Stackebrandt, E.4    Shivaji, S.5
  • 31
    • 53749083325 scopus 로고    scopus 로고
    • Leifsonia pindariensis sp. nov., isolated from the Pindari glacier of the Indian Himalayas, and emended description of the genus Leifsonia
    • Reddy, G. S. N., Prabagaran, S. R. & Shivaji, S. (2008). Leifsonia pindariensis sp. nov., isolated from the Pindari glacier of the Indian Himalayas, and emended description of the genus Leifsonia. Int J Syst Evol Microbiol 58, 2229-2234.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2229-2234
    • Reddy, G.S.N.1    Prabagaran, S.R.2    Shivaji, S.3
  • 34
    • 0015462556 scopus 로고
    • Peptidoglycan types of bacterial cell walls and their taxonomic implications
    • Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
    • (1972) Bacteriol Rev , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 35
    • 19544372992 scopus 로고    scopus 로고
    • Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India
    • Shivaji, S., Chaturvedi, P., Reddy, G. S. N. & Suresh, K. (2005). Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 55, 1083-1088.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1083-1088
    • Shivaji, S.1    Chaturvedi, P.2    Reddy, G.S.N.3    Suresh, K.4
  • 36
    • 0022549465 scopus 로고
    • The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method
    • Sly, L. I., Blackall, L. L., Kraat, P. C., Tian-Shen, T. & Sangkhobol, V. (1986). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. J Microbiol Methods 5, 139-156.
    • (1986) J Microbiol Methods , vol.5 , pp. 139-156
    • Sly, L.I.1    Blackall, L.L.2    Kraat, P.C.3    Tian-Shen, T.4    Sangkhobol, V.5
  • 37
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.