Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 3, 2008, Pages 682-687

  Roux, Véronique ^a   Fenner, Lukas ^a,b   Raoult, Didier ^a  

^a TIMONE HOSPITAL   (France)

^b UNIVERSITY HOSPITAL BASEL   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; BACTERIAL DNA; FATTY ACID;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CEREBROSPINAL FLUID; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; HUMAN; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS AMYLOLYTICUS; PAENIBACILLUS BARCINONENSIS; PAENIBACILLUS ILLINOISENSIS; PAENIBACILLUS MASSILIENSIS; PAENIBACILLUS PABULI; PAENIBACILLUS PROVECENSIS; PAENIBACILLUS URINALIS; PAENIBACILLUS XYLANILYTICUS; PHYLOGENY; PRIORITY JOURNAL; URINE; ADULT; BACTERIUM IDENTIFICATION; CASE REPORT; CLASSIFICATION; DNA SEQUENCE; FEMALE; GENETICS; GRAM NEGATIVE INFECTION; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MIDDLE AGED; MOLECULAR GENETICS; RNA GENE; SPECIES DIFFERENCE;

NEGIBACTERIA; PAENIBACILLUS; PAENIBACILLUS AMYLOLYTICUS; PAENIBACILLUS BARCINONENSIS; PAENIBACILLUS ILLINOISENSIS; PAENIBACILLUS MASSILIENSIS; PAENIBACILLUS PABULI; PAENIBACILLUS XYLANILYTICUS;

ADULT; BACTERIAL TYPING TECHNIQUES; CEREBROSPINAL FLUID; DNA, BACTERIAL; FATTY ACIDS; FEMALE; GENES, RRNA; GENOTYPE; GRAM-NEGATIVE BACTERIA; GRAM-NEGATIVE BACTERIAL INFECTIONS; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; URINE;

EID: 44449127788     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65228-0     Document Type: Article

References (21)

1. Ash, C., Priest, F. G. & Collins, D. C. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposals for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
2. Bosshard, P. P., Zbinden, R. & Altwegg, M. (2002). Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes. Int J Syst Evol Microbiol 52, 2241-2249.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. Daane, L. L., Harjono, I., Barns, S. M., Launen, L. A., Palleroni, N. J. & Häggblom, M. M. (2002). PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene-degrading bacterium from the rhizosphere of salt marsh plants. Int J Syst Evol Microbiol 52, 131-139.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
7. Karlovsky, M. E. & Pontari, M. A. (2002). Theories of prostatitis etiology. Curr Urol Rep 3, 307-312.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
9. Kumar, S., Tamura, K., Jakobsen, I.-B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
10. Nasu, Y., Nosaka, Y., Otsuka, Y., Tsuruga, T., Nakajima, M., Watanabe, Y. & Jin, M. (2003). A case of Paenibacillus polymyxa bacteraemia in a patient with cerebral infarction. Kansenshogaku Zasshi 77, 844-848 (in Japanese).
11. Noskin, G. A., Suriano, T., Collins, S., Sesler, S. & Peterson, L. R. (2001). Paenibacillus macerans pseudobacteremia resulting from contaminated blood culture bottles in a neonatal intensive care unit. Am J Infect Control 29, 126-129.
12. Rivas, R., Mateos, P. F., Martinez-Molina, E. & Velazquez, E. (2005). Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium. Int J Syst Evol Microbiol 55, 405-408.
13. Roux, V. & Raoult, D. (2004). Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54, 1049-1054.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sánchez, M. M., Fritze, D., Blanco, A., Spröer, C., Tindall, B. J., Schumann, P., Kroppenstedt, R. M., Diaz, P. & Pastor, F. I. J. (2005). Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta. Int J Syst Evol Microbiol 55, 935-939.
16. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997a). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
17. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, (1997b). Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. Int J Syst Bacteriol 47, 299-306.
18. Teng, J. L. L., Woo, P. C. Y., Leung, K. W., Lau, S. K. P., Wong, M. K. & Yuen, K. Y. (2003). Pseudobacteraemia in a patient with neutropenic fever caused by a novel paenibacillus species: Paenibacillus hongkongensis sp. nov. Mol Pathol 56, 29-35.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). Report of the ad hoc committee on reconciliation approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.