-
1
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005, 120(1):21-24.
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van de Belt, J.3
Wienholds, E.4
Plasterk, R.H.5
Cuppen, E.6
-
3
-
-
77958040394
-
A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.)
-
Colaiacovo M, Subacchi A, Bagnaresi P, Lamontanara A, Cattivelli L, Faccioli P. A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.). BMC Genomics 2010, 11:595.
-
(2010)
BMC Genomics
, vol.11
, pp. 595
-
-
Colaiacovo, M.1
Subacchi, A.2
Bagnaresi, P.3
Lamontanara, A.4
Cattivelli, L.5
Faccioli, P.6
-
4
-
-
0037321349
-
New microRNAs from mouse and human
-
Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T. New microRNAs from mouse and human. RNA 2003, 9(2):175-179.
-
(2003)
RNA
, vol.9
, Issue.2
, pp. 175-179
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Meyer, J.3
Borkhardt, A.4
Tuschl, T.5
-
5
-
-
77956820219
-
Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts
-
Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW. Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts. J Virol 2010, 84(19):10344-10353.
-
(2010)
J Virol
, vol.84
, Issue.19
, pp. 10344-10353
-
-
Reese, T.A.1
Xia, J.2
Johnson, L.S.3
Zhou, X.4
Zhang, W.5
Virgin, H.W.6
-
6
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 2008, 8:25.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.K.5
-
7
-
-
77956410132
-
Identification of unique microRNA signature associated with lupus nephritis
-
Te JL, Dozmorov IM, Guthridge JM, Nguyen KL, Cavett JW, Kelly JA, Bruner GR, Harley JB, Ojwang JO. Identification of unique microRNA signature associated with lupus nephritis. PLoS One 2010, 5(5):e10344.
-
(2010)
PLoS One
, vol.5
, Issue.5
-
-
Te, J.L.1
Dozmorov, I.M.2
Guthridge, J.M.3
Nguyen, K.L.4
Cavett, J.W.5
Kelly, J.A.6
Bruner, G.R.7
Harley, J.B.8
Ojwang, J.O.9
-
8
-
-
20444457846
-
Post-transcriptional gene silencing by siRNAs and miRNAs
-
Filipowicz W, Jaskiewicz L, Kolb FA, Pillai RS. Post-transcriptional gene silencing by siRNAs and miRNAs. Curr Opin Struct Biol 2005, 15(3):331-341.
-
(2005)
Curr Opin Struct Biol
, vol.15
, Issue.3
, pp. 331-341
-
-
Filipowicz, W.1
Jaskiewicz, L.2
Kolb, F.A.3
Pillai, R.S.4
-
9
-
-
22144437679
-
Silence from within: endogenous siRNAs and miRNAs
-
Sontheimer EJ, Carthew RW. Silence from within: endogenous siRNAs and miRNAs. Cell 2005, 122(1):9-12.
-
(2005)
Cell
, vol.122
, Issue.1
, pp. 9-12
-
-
Sontheimer, E.J.1
Carthew, R.W.2
-
10
-
-
41649114199
-
Suppression of non-small cell lung tumor development by the let-7 microRNA family
-
Kumar MS, Erkeland SJ, Pester RE, Chen CY, Ebert MS, Sharp PA, Jacks T. Suppression of non-small cell lung tumor development by the let-7 microRNA family. Proc Natl Acad Sci U S A 2008, 105(10):3903-3908.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.10
, pp. 3903-3908
-
-
Kumar, M.S.1
Erkeland, S.J.2
Pester, R.E.3
Chen, C.Y.4
Ebert, M.S.5
Sharp, P.A.6
Jacks, T.7
-
11
-
-
34547941361
-
MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb
-
Xiao C, Calado DP, Galler G, Thai TH, Patterson HC, Wang J, Rajewsky N, Bender TP, Rajewsky K. MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell 2007, 131(1):146-159.
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 146-159
-
-
Xiao, C.1
Calado, D.P.2
Galler, G.3
Thai, T.H.4
Patterson, H.C.5
Wang, J.6
Rajewsky, N.7
Bender, T.P.8
Rajewsky, K.9
-
12
-
-
84855193230
-
Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach
-
Ou J, Meng Q, Li Y, Xiu Y, Du J, Gu W, Wu T, Li W, Ding Z, Wang W. Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach. Fish Shellfish Immunol 2012, 32(2):345-352.
-
(2012)
Fish Shellfish Immunol
, vol.32
, Issue.2
, pp. 345-352
-
-
Ou, J.1
Meng, Q.2
Li, Y.3
Xiu, Y.4
Du, J.5
Gu, W.6
Wu, T.7
Li, W.8
Ding, Z.9
Wang, W.10
-
14
-
-
84857478739
-
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development
-
Bizuayehu TT, Lanes CF, Furmanek T, Karlsen BO, Fernandes JM, Johansen SD, Babiak I. Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development. BMC Genomics 2012, 13:11.
-
(2012)
BMC Genomics
, vol.13
, pp. 11
-
-
Bizuayehu, T.T.1
Lanes, C.F.2
Furmanek, T.3
Karlsen, B.O.4
Fernandes, J.M.5
Johansen, S.D.6
Babiak, I.7
-
15
-
-
78649803916
-
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
-
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC. Discovery and characterization of medaka miRNA genes by next generation sequencing platform. BMC Genomics 2010, 11(Suppl 4):S8.
-
(2010)
BMC Genomics
, vol.11
, Issue.SUPPL. 4
-
-
Li, S.C.1
Chan, W.C.2
Ho, M.R.3
Tsai, K.W.4
Hu, L.Y.5
Lai, C.H.6
Hsu, C.N.7
Hwang, P.P.8
Lin, W.C.9
-
16
-
-
77954955227
-
A microRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss)
-
Salem M, Xiao C, Womack J, Rexroad CE, Yao J. A microRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Mar Biotechnol (NY) 2010, 12(4):410-429.
-
(2010)
Mar Biotechnol (NY)
, vol.12
, Issue.4
, pp. 410-429
-
-
Salem, M.1
Xiao, C.2
Womack, J.3
Rexroad, C.E.4
Yao, J.5
-
17
-
-
79960774021
-
Identification and differential expression of microRNAs during metamorphosis of the Japanese flounder (Paralichthys olivaceus)
-
Fu Y, Shi Z, Wu M, Zhang J, Jia L, Chen X. Identification and differential expression of microRNAs during metamorphosis of the Japanese flounder (Paralichthys olivaceus). PLoS One 2011, 6(7):e22957.
-
(2011)
PLoS One
, vol.6
, Issue.7
-
-
Fu, Y.1
Shi, Z.2
Wu, M.3
Zhang, J.4
Jia, L.5
Chen, X.6
-
18
-
-
79952613841
-
Identification and characterization of 63 MicroRNAs in the Asian seabass Lates calcarifer
-
Xia JH, He XP, Bai ZY, Yue GH. Identification and characterization of 63 MicroRNAs in the Asian seabass Lates calcarifer. PLoS One 2011, 6(3):e17537.
-
(2011)
PLoS One
, vol.6
, Issue.3
-
-
Xia, J.H.1
He, X.P.2
Bai, Z.Y.3
Yue, G.H.4
-
19
-
-
24644476482
-
MicroRNA identification based on sequence and structure alignment
-
Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y. MicroRNA identification based on sequence and structure alignment. Bioinformatics 2005, 21(18):3610-3614.
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3610-3614
-
-
Wang, X.1
Zhang, J.2
Li, F.3
Gu, J.4
He, T.5
Zhang, X.6
Li, Y.7
-
20
-
-
33745577150
-
A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep
-
Clop A, Marcq F, Takeda H, Pirottin D, Tordoir X, Bibe B, Bouix J, Caiment F, Elsen JM, Eychenne F, et al. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat Genet 2006, 38(7):813-818.
-
(2006)
Nat Genet
, vol.38
, Issue.7
, pp. 813-818
-
-
Clop, A.1
Marcq, F.2
Takeda, H.3
Pirottin, D.4
Tordoir, X.5
Bibe, B.6
Bouix, J.7
Caiment, F.8
Elsen, J.M.9
Eychenne, F.10
-
21
-
-
77952821615
-
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
-
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet 2010, 42(6):541-544.
-
(2010)
Nat Genet
, vol.42
, Issue.6
, pp. 541-544
-
-
Jiao, Y.1
Wang, Y.2
Xue, D.3
Wang, J.4
Yan, M.5
Liu, G.6
Dong, G.7
Zeng, D.8
Lu, Z.9
Zhu, X.10
-
22
-
-
33751520430
-
Natural selection on human microRNA binding sites inferred from SNP data
-
Chen K, Rajewsky N. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006, 38(12):1452-1456.
-
(2006)
Nat Genet
, vol.38
, Issue.12
, pp. 1452-1456
-
-
Chen, K.1
Rajewsky, N.2
-
23
-
-
77952918274
-
Genetic variation in microRNA networks: the implications for cancer research
-
Ryan BM, Robles AI, Harris CC. Genetic variation in microRNA networks: the implications for cancer research. Nat Rev Cancer 2010, 10(6):389-402.
-
(2010)
Nat Rev Cancer
, vol.10
, Issue.6
, pp. 389-402
-
-
Ryan, B.M.1
Robles, A.I.2
Harris, C.C.3
-
24
-
-
79953241924
-
Two novel SNPs in HSF1 gene are associated with thermal tolerance traits in Chinese Holstein cattle
-
Li QL, Ju ZH, Huang JM, Li JB, Li RL, Hou MH, Wang CF, Zhong JF. Two novel SNPs in HSF1 gene are associated with thermal tolerance traits in Chinese Holstein cattle. DNA Cell Biol 2011, 30(4):247-254.
-
(2011)
DNA Cell Biol
, vol.30
, Issue.4
, pp. 247-254
-
-
Li, Q.L.1
Ju, Z.H.2
Huang, J.M.3
Li, J.B.4
Li, R.L.5
Hou, M.H.6
Wang, C.F.7
Zhong, J.F.8
-
25
-
-
67349223927
-
Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
-
Mencia A, Modamio-Hoybjor S, Redshaw N, Morin M, Mayo-Merino F, Olavarrieta L, Aguirre LA, del Castillo I, Steel KP, Dalmay T, et al. Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. Nat Genet 2009, 41(5):609-613.
-
(2009)
Nat Genet
, vol.41
, Issue.5
, pp. 609-613
-
-
Mencia, A.1
Modamio-Hoybjor, S.2
Redshaw, N.3
Morin, M.4
Mayo-Merino, F.5
Olavarrieta, L.6
Aguirre, L.A.7
del Castillo, I.8
Steel, K.P.9
Dalmay, T.10
-
26
-
-
52949119537
-
MicroRNA target site polymorphisms and human disease
-
Sethupathy P, Collins FS. MicroRNA target site polymorphisms and human disease. Trends Genet 2008, 24(10):489-497.
-
(2008)
Trends Genet
, vol.24
, Issue.10
, pp. 489-497
-
-
Sethupathy, P.1
Collins, F.S.2
-
27
-
-
48249142558
-
Sequence variation of MicroRNAs and their binding sites in Arabidopsis
-
Ehrenreich IM, Purugganan MD. Sequence variation of MicroRNAs and their binding sites in Arabidopsis. Plant Physiol 2008, 146(4):1974-1982.
-
(2008)
Plant Physiol
, vol.146
, Issue.4
, pp. 1974-1982
-
-
Ehrenreich, I.M.1
Purugganan, M.D.2
-
28
-
-
74049164557
-
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
-
Chen X, Li Q, Wang J, Guo X, Jiang X, Ren Z, Weng C, Sun G, Wang X, Liu Y, et al. Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 2009, 10(7):R78.
-
(2009)
Genome Biol
, vol.10
, Issue.7
-
-
Chen, X.1
Li, Q.2
Wang, J.3
Guo, X.4
Jiang, X.5
Ren, Z.6
Weng, C.7
Sun, G.8
Wang, X.9
Liu, Y.10
-
29
-
-
79953854462
-
Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences
-
Xu P, Li J, Li Y, Cui R, Wang J, Zhang Y, Zhao Z, Sun X. Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences. BMC Genomics 2011, 12:188.
-
(2011)
BMC Genomics
, vol.12
, pp. 188
-
-
Xu, P.1
Li, J.2
Li, Y.3
Cui, R.4
Wang, J.5
Zhang, Y.6
Zhao, Z.7
Sun, X.8
-
30
-
-
84862811678
-
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)
-
Wang JT, Li JT, Zhang XF, Sun XW. Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio). BMC Genomics 2012, 13(1):96.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 96
-
-
Wang, J.T.1
Li, J.T.2
Zhang, X.F.3
Sun, X.W.4
-
31
-
-
38549150275
-
MiRBase: tools for microRNA genomics
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Res 2008, 36(Database issue):D154-D158.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
-
-
Griffiths-Jones, S.1
Saini, H.K.2
van Dongen, S.3
Enright, A.J.4
-
32
-
-
84934438960
-
UNAFold: software for nucleic acid folding and hybridization
-
Markham NR, Zuker M. UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 2008, 453:3-31.
-
(2008)
Methods Mol Biol
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
33
-
-
33846283385
-
The evolution of gene regulation by transcription factors and microRNAs
-
Chen K, Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet 2007, 8(2):93-103.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.2
, pp. 93-103
-
-
Chen, K.1
Rajewsky, N.2
-
34
-
-
77950484612
-
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)
-
Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ. Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.). BMC Plant Biol 2010, 10:3.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 3
-
-
Zhao, C.Z.1
Xia, H.2
Frazier, T.P.3
Yao, Y.Y.4
Bi, Y.P.5
Li, A.Q.6
Li, M.J.7
Li, C.S.8
Zhang, B.H.9
Wang, X.J.10
-
35
-
-
70350451757
-
Enrichment of a set of microRNAs during the cotton fiber development
-
Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM. Enrichment of a set of microRNAs during the cotton fiber development. BMC Genomics 2009, 10:457.
-
(2009)
BMC Genomics
, vol.10
, pp. 457
-
-
Kwak, P.B.1
Wang, Q.Q.2
Chen, X.S.3
Qiu, C.X.4
Yang, Z.M.5
-
36
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
Zhang J, Xu Y, Huan Q, Chong K. Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genomics 2009, 10:449.
-
(2009)
BMC Genomics
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
Chong, K.4
-
37
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML. A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 2008, 18(6):957-964.
-
(2008)
Genome Res
, vol.18
, Issue.6
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
Tizard, M.L.6
-
38
-
-
84867744207
-
Regulation of miRNA 219 and miRNA Clusters 338 and 17-92 in Oligodendrocytes
-
de Faria O, Cui QL, Bin JM, Bull SJ, Kennedy TE, Bar-Or A, Antel JP, Colman DR, Dhaunchak AS. Regulation of miRNA 219 and miRNA Clusters 338 and 17-92 in Oligodendrocytes. Front Genet 2012, 3:46.
-
(2012)
Front Genet
, vol.3
, pp. 46
-
-
de Faria, O.1
Cui, Q.L.2
Bin, J.M.3
Bull, S.J.4
Kennedy, T.E.5
Bar-Or, A.6
Antel, J.P.7
Colman, D.R.8
Dhaunchak, A.S.9
-
39
-
-
33646913875
-
Cloning and expression of new microRNAs from zebrafish
-
Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH. Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Res 2006, 34(9):2558-2569.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.9
, pp. 2558-2569
-
-
Kloosterman, W.P.1
Steiner, F.A.2
Berezikov, E.3
de Bruijn, E.4
van de Belt, J.5
Verheul, M.6
Cuppen, E.7
Plasterk, R.H.8
-
40
-
-
34147157651
-
The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development
-
Visvanathan J, Lee S, Lee B, Lee JW, Lee SK. The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development. Genes Dev 2007, 21(7):744-749.
-
(2007)
Genes Dev
, vol.21
, Issue.7
, pp. 744-749
-
-
Visvanathan, J.1
Lee, S.2
Lee, B.3
Lee, J.W.4
Lee, S.K.5
-
41
-
-
40449098091
-
MicroRNAs and immunity: novel players in the regulation of normal immune function and inflammation
-
Sonkoly E, Stahle M, Pivarcsi A. MicroRNAs and immunity: novel players in the regulation of normal immune function and inflammation. Semin Cancer Biol 2008, 18(2):131-140.
-
(2008)
Semin Cancer Biol
, vol.18
, Issue.2
, pp. 131-140
-
-
Sonkoly, E.1
Stahle, M.2
Pivarcsi, A.3
-
42
-
-
36248978699
-
MicroRNA expression is required for pancreatic islet cell genesis in the mouse
-
Lynn FC, Skewes-Cox P, Kosaka Y, McManus MT, Harfe BD, German MS. MicroRNA expression is required for pancreatic islet cell genesis in the mouse. Diabetes 2007, 56(12):2938-2945.
-
(2007)
Diabetes
, vol.56
, Issue.12
, pp. 2938-2945
-
-
Lynn, F.C.1
Skewes-Cox, P.2
Kosaka, Y.3
McManus, M.T.4
Harfe, B.D.5
German, M.S.6
-
43
-
-
33847746661
-
Identification and characterization of microRNAs expressed in the mouse eye
-
Karali M, Peluso I, Marigo V, Banfi S. Identification and characterization of microRNAs expressed in the mouse eye. Invest Ophthalmol Vis Sci 2007, 48(2):509-515.
-
(2007)
Invest Ophthalmol Vis Sci
, vol.48
, Issue.2
, pp. 509-515
-
-
Karali, M.1
Peluso, I.2
Marigo, V.3
Banfi, S.4
-
44
-
-
25444439861
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res 2011, 39(Database issue):D32-37.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
45
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB. Prediction of mammalian microRNA targets. Cell 2003, 115(7):787-798.
-
(2003)
Cell
, vol.115
, Issue.7
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
46
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. The role of site accessibility in microRNA target recognition. Nat Genet 2007, 39(10):1278-1284.
-
(2007)
Nat Genet
, vol.39
, Issue.10
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
47
-
-
79551586302
-
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
-
Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res 2011, 21(2):203-215.
-
(2011)
Genome Res
, vol.21
, Issue.2
, pp. 203-215
-
-
Berezikov, E.1
Robine, N.2
Samsonova, A.3
Westholm, J.O.4
Naqvi, A.5
Hung, J.H.6
Okamura, K.7
Dai, Q.8
Bortolamiol-Becet, D.9
Martin, R.10
-
48
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010, 466(7308):835-840.
-
(2010)
Nature
, vol.466
, Issue.7308
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
49
-
-
69049108754
-
SNPs in human miRNA genes affect biogenesis and function
-
Sun G, Yan J, Noltner K, Feng J, Li H, Sarkis DA, Sommer SS, Rossi JJ. SNPs in human miRNA genes affect biogenesis and function. RNA 2009, 15(9):1640-1651.
-
(2009)
RNA
, vol.15
, Issue.9
, pp. 1640-1651
-
-
Sun, G.1
Yan, J.2
Noltner, K.3
Feng, J.4
Li, H.5
Sarkis, D.A.6
Sommer, S.S.7
Rossi, J.J.8
-
50
-
-
34447319406
-
Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
-
Duan R, Pak C, Jin P. Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum Mol Genet 2007, 16(9):1124-1131.
-
(2007)
Hum Mol Genet
, vol.16
, Issue.9
, pp. 1124-1131
-
-
Duan, R.1
Pak, C.2
Jin, P.3
-
51
-
-
84857691987
-
Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis
-
Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY. Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Hum Mutat 2012, 33(1):254-263.
-
(2012)
Hum Mutat
, vol.33
, Issue.1
, pp. 254-263
-
-
Gong, J.1
Tong, Y.2
Zhang, H.M.3
Wang, K.4
Hu, T.5
Shan, G.6
Sun, J.7
Guo, A.Y.8
-
52
-
-
84856407329
-
Identification and profiling of microRNAs from skeletal muscle of the common carp
-
Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB. Identification and profiling of microRNAs from skeletal muscle of the common carp. PLoS One 2012, 7(1):e30925.
-
(2012)
PLoS One
, vol.7
, Issue.1
-
-
Yan, X.1
Ding, L.2
Li, Y.3
Zhang, X.4
Liang, Y.5
Sun, X.6
Teng, C.B.7
-
53
-
-
59649103076
-
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate
-
Shi W, Hendrix D, Levine M, Haley B. A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate. Nat Struct Mol Biol 2009, 16(2):183-189.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.2
, pp. 183-189
-
-
Shi, W.1
Hendrix, D.2
Levine, M.3
Haley, B.4
-
54
-
-
84859294576
-
Characterization and discovery of novel miRNAs and moRNAs in JAK2V617F-mutated SET2 cells
-
Bortoluzzi S, Bisognin A, Biasiolo M, Guglielmelli P, Biamonte F, Norfo R, Manfredini R, Vannucchi AM. Characterization and discovery of novel miRNAs and moRNAs in JAK2V617F-mutated SET2 cells. Blood 2012, 119(13):e120-e130.
-
(2012)
Blood
, vol.119
, Issue.13
-
-
Bortoluzzi, S.1
Bisognin, A.2
Biasiolo, M.3
Guglielmelli, P.4
Biamonte, F.5
Norfo, R.6
Manfredini, R.7
Vannucchi, A.M.8
-
55
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, et al. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 2008, 18(4):610-621.
-
(2008)
Genome Res
, vol.18
, Issue.4
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
-
57
-
-
70350000602
-
TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples
-
Bandyopadhyay S, Mitra R. TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples. Bioinformatics 2009, 25(20):2625-2631.
-
(2009)
Bioinformatics
, vol.25
, Issue.20
, pp. 2625-2631
-
-
Bandyopadhyay, S.1
Mitra, R.2
-
58
-
-
31044444975
-
TarBase: A comprehensive database of experimentally supported animal microRNA targets
-
Sethupathy P, Corda B, Hatzigeorgiou AG. TarBase: A comprehensive database of experimentally supported animal microRNA targets. RNA 2006, 12(2):192-197.
-
(2006)
RNA
, vol.12
, Issue.2
, pp. 192-197
-
-
Sethupathy, P.1
Corda, B.2
Hatzigeorgiou, A.G.3
-
59
-
-
79957579613
-
Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques
-
Su WL, Kleinhanz RR, Schadt EE. Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques. Mol Syst Biol 2011, 7:490.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 490
-
-
Su, W.L.1
Kleinhanz, R.R.2
Schadt, E.E.3
-
60
-
-
84857204573
-
MiRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases
-
Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus HA, Meder B, et al. miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinforma 2012, 13(1):36.
-
(2012)
BMC Bioinforma
, vol.13
, Issue.1
, pp. 36
-
-
Laczny, C.1
Leidinger, P.2
Haas, J.3
Ludwig, N.4
Backes, C.5
Gerasch, A.6
Kaufmann, M.7
Vogel, B.8
Katus, H.A.9
Meder, B.10
-
61
-
-
77957665187
-
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans
-
Jovanovic M, Reiter L, Picotti P, Lange V, Bogan E, Hurschler BA, Blenkiron C, Lehrbach NJ, Ding XC, Weiss M, et al. A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nat Methods 2010, 7(10):837-842.
-
(2010)
Nat Methods
, vol.7
, Issue.10
, pp. 837-842
-
-
Jovanovic, M.1
Reiter, L.2
Picotti, P.3
Lange, V.4
Bogan, E.5
Hurschler, B.A.6
Blenkiron, C.7
Lehrbach, N.J.8
Ding, X.C.9
Weiss, M.10
-
62
-
-
4243170045
-
Identification of Drosophila MicroRNA targets
-
Stark A, Brennecke J, Russell RB, Cohen SM. Identification of Drosophila MicroRNA targets. PLoS Biol 2003, 1(3):E60.
-
(2003)
PLoS Biol
, vol.1
, Issue.3
-
-
Stark, A.1
Brennecke, J.2
Russell, R.B.3
Cohen, S.M.4
-
63
-
-
30044443191
-
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
-
Yang W, Chendrimada TP, Wang Q, Higuchi M, Seeburg PH, Shiekhattar R, Nishikura K. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat Struct Mol Biol 2006, 13(1):13-21.
-
(2006)
Nat Struct Mol Biol
, vol.13
, Issue.1
, pp. 13-21
-
-
Yang, W.1
Chendrimada, T.P.2
Wang, Q.3
Higuchi, M.4
Seeburg, P.H.5
Shiekhattar, R.6
Nishikura, K.7
-
64
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG, Nishikura K. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 2007, 315(5815):1137-1140.
-
(2007)
Science
, vol.315
, Issue.5815
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
65
-
-
0035224746
-
Design of a compartmentalized shotgun assembler for the human genome
-
Huson DH, Reinert K, Kravitz SA, Remington KA, Delcher AL, Dew IM, Flanigan M, Halpern AL, Lai Z, Mobarry CM, et al. Design of a compartmentalized shotgun assembler for the human genome. Bioinformatics 2001, 17(Suppl 1):S132-S139.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Huson, D.H.1
Reinert, K.2
Kravitz, S.A.3
Remington, K.A.4
Delcher, A.L.5
Dew, I.M.6
Flanigan, M.7
Halpern, A.L.8
Lai, Z.9
Mobarry, C.M.10
-
66
-
-
78651293534
-
MiRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011, 39(Database issue):D152-D157.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
67
-
-
56949083333
-
Computational prediction of amphioxus microRNA genes and their targets
-
Luo Y, Zhang S. Computational prediction of amphioxus microRNA genes and their targets. Gene 2009, 428(1-2):41-46.
-
(2009)
Gene
, vol.428
, Issue.1-2
, pp. 41-46
-
-
Luo, Y.1
Zhang, S.2
-
68
-
-
84876201979
-
-
MIREAP http://sourceforge.net/projects/mireap.
-
MIREAP
-
-
-
69
-
-
0037252684
-
Rfam: an RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Res 2003, 31(1):439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
71
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24(5):713-714.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
72
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003, 31(13):3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
74
-
-
84876202364
-
-
dbEST http://www.ncbi.nlm.nih.gov/nucest.
-
dbEST
-
-
-
75
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18(11):1851-1858.
-
(2008)
Genome Res
, vol.18
, Issue.11
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
76
-
-
77957151956
-
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
-
Cox MP, Peterson DA, Biggs PJ. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinforma 2010, 11:485.
-
(2010)
BMC Bioinforma
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
77
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
78
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
79
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
|