-
1
-
-
73649109602
-
A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral microRNAs
-
Bogerd, H. P., H. W. Karnowski, X. Cai, J. Shin, M. Pohlers, and B. R. Cullen. 2010. A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral microRNAs. Mol. Cell 37:135-142.
-
(2010)
Mol. Cell
, vol.37
, pp. 135-142
-
-
Bogerd, H.P.1
Karnowski, H.W.2
Cai, X.3
Shin, J.4
Pohlers, M.5
Cullen, B.R.6
-
3
-
-
0030808292
-
Murine gammaherpesvirus 68 encodes tRNA-like sequences which are expressed during latency
-
Bowden, R. J., J. P. Simas, A. J. Davis, and S. Efstathiou. 1997. Murine gammaherpesvirus 68 encodes tRNA-like sequences which are expressed during latency. J. Gen. Virol. 78:1675-1687.
-
(1997)
J. Gen. Virol.
, vol.78
, pp. 1675-1687
-
-
Bowden, R.J.1
Simas, J.P.2
Davis, A.J.3
Efstathiou, S.4
-
4
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole, C., A. Sobala, C. Lu, S. R. Thatcher, A. Bowman, J. W. Brown, P. J. Green, G. J. Barton, and G. Hutvagner. 2009. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15:2147-2160.
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.6
Green, P.J.7
Barton, G.J.8
Hutvagner, G.9
-
5
-
-
20144375993
-
Small nuclear RNAs encoded by herpesvirus saimiri upregulate the expression of genes linked to T cell activation in virally transformed T cells
-
Cook, H. L., J. R. Lytle, H. E. Mischo, M. J. Li, J. J. Rossi, D. P. Silva, R. C. Desrosiers, and J. A. Steitz. 2005. Small nuclear RNAs encoded by herpesvirus saimiri upregulate the expression of genes linked to T cell activation in virally transformed T cells. Curr. Biol. 15:974-979.
-
(2005)
Curr. Biol.
, vol.15
, pp. 974-979
-
-
Cook, H.L.1
Lytle, J.R.2
Mischo, H.E.3
Li, M.J.4
Rossi, J.J.5
Silva, D.P.6
Desrosiers, R.C.7
Steitz, J.A.8
-
6
-
-
75649119703
-
Mature and functional viral miRNAs transcribed from novel RNA polymerase III promoters
-
Diebel, K. W., A. L. Smith, and L. F. Van Dyk. 2010. Mature and functional viral miRNAs transcribed from novel RNA polymerase III promoters. RNA 16:170-185.
-
(2010)
RNA
, vol.16
, pp. 170-185
-
-
Diebel, K.W.1
Smith, A.L.2
Van Dyk, L.F.3
-
7
-
-
43349093418
-
RNA secondary structure analysis using the Vienna RNA package
-
unit 12.2
-
Hofacker, I. L. 2009. RNA secondary structure analysis using the Vienna RNA package. Curr. Protoc. Bioinformatics 12:unit 12.2.
-
(2009)
Curr. Protoc. Bioinformatics
, vol.12
-
-
Hofacker, I.L.1
-
8
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., C. Trapnell, M. Pop, and S. L. Salzberg. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
9
-
-
72749089855
-
A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
-
Lee, Y. S., Y. Shibata, A. Malhotra, and A. Dutta. 2009. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23:2639-2649.
-
(2009)
Genes Dev.
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
10
-
-
77955098309
-
Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs
-
Lin, Y. T., R. P. Kincaid, D. Arasappan, S. E. Dowd, S. P. Hunicke-Smith, and C. S. Sullivan. 2010. Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs. RNA 16:1540-1558.
-
(2010)
RNA
, vol.16
, pp. 1540-1558
-
-
Lin, Y.T.1
Kincaid, R.P.2
Arasappan, D.3
Dowd, S.E.4
Hunicke-Smith, S.P.5
Sullivan, C.S.6
-
11
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone, C. D., and G. J. Hannon. 2009. Small RNAs as guardians of the genome. Cell 136:656-668.
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
12
-
-
0025931571
-
Adenovirus virus-associated RNA and translation control
-
Mathews, M. B., and T. Shenk. 1991. Adenovirus virus-associated RNA and translation control. J. Virol. 65:5657-5662.
-
(1991)
J. Virol.
, vol.65
, pp. 5657-5662
-
-
Mathews, M.B.1
Shenk, T.2
-
13
-
-
13344282731
-
Targeted disruption of the Stat 1 gene in mice reveals unexpected physiologic specificity of the JAK-STAT signaling pathway
-
Meraz, M. A., J. M. White, K. C. F. Sheehan, E. A. Bach, S. J. Rodig, A. S. Dighe, D. H. Kaplan, J. K. Riley, A. C. Greenlund, D. Campbell, K. Carver-Moore, R. N. DuBois, R. Clark, M. Aguet, and R. D. Schreiber. 1996. Targeted disruption of the Stat 1 gene in mice reveals unexpected physiologic specificity of the JAK-STAT signaling pathway. Cell 84:431-442.
-
(1996)
Cell
, vol.84
, pp. 431-442
-
-
Meraz, M.A.1
White, J.M.2
Sheehan, K.C.F.3
Bach, E.A.4
Rodig, S.J.5
Dighe, A.S.6
Kaplan, D.H.7
Riley, J.K.8
Greenlund, A.C.9
Campbell, D.10
Carver-Moore, K.11
DuBois, R.N.12
Clark, R.13
Aguet, M.14
Schreiber, R.D.15
-
14
-
-
58749097426
-
Small RNAs in transcriptional gene silencing and genome defence
-
Moazed, D. 2009. Small RNAs in transcriptional gene silencing and genome defence. Nature 457:413-420.
-
(2009)
Nature
, vol.457
, pp. 413-420
-
-
Moazed, D.1
-
15
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin, R. D., M. D. O'Connor, M. Griffith, F. Kuchenbauer, A. Delaney, A. L. Prabhu, Y. Zhao, H. McDonald, T. Zeng, M. Hirst, C. J. Eaves, and M. A. Marra. 2008. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 18:610-621.
-
(2008)
Genome Res.
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
Eaves, C.J.11
Marra, M.A.12
-
16
-
-
64649083498
-
Diverse herpesvirus microRNAs target the stress-induced immune ligand MICB to escape recognition by natural killer cells
-
Nachmani, D., N. Stern-Ginossar, R. Sarid, and O. Mandelboim. 2009. Diverse herpesvirus microRNAs target the stress-induced immune ligand MICB to escape recognition by natural killer cells. Cell Host Microbe 5:376-385.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 376-385
-
-
Nachmani, D.1
Stern-Ginossar, N.2
Sarid, R.3
Mandelboim, O.4
-
17
-
-
41649089309
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution
-
Okamura, K., M. D. Phillips, D. M. Tyler, H. Duan, Y. T. Chou, and E. C. Lai. 2008. The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution. Nat. Struct. Mol. Biol. 15:354-363.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.T.5
Lai, E.C.6
-
18
-
-
44949098384
-
Improved Northern blot method for enhanced detection of small RNA
-
Pall, G. S., and A. J. Hamilton. 2008. Improved Northern blot method for enhanced detection of small RNA. Nat. Protoc. 3:1077-1084.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1077-1084
-
-
Pall, G.S.1
Hamilton, A.J.2
-
19
-
-
0037695160
-
Disruption of gamma-herpesvirus 68 gene 50 demonstrates that Rta is essential for virus replication
-
Pavlova, L. V., H. W. Virgin, and S. H. Speck. 2003. Disruption of gamma-herpesvirus 68 gene 50 demonstrates that Rta is essential for virus replication. J. Virol. 77:5731-5739.
-
(2003)
J. Virol.
, vol.77
, pp. 5731-5739
-
-
Pavlova, L.V.1
Virgin, H.W.2
Speck, S.H.3
-
20
-
-
20844463414
-
Identification of microRNAs of the herpesvirus family
-
Pfeffer, S., A. Sewer, M. Lagos-Quintana, R. Sheridan, C. Sander, F. A. Grasser, L. F. Van Dyk, C. K. Ho, S. Shuman, M. Chien, J. J. Russo, J. Ju, G. Randall, B. D. Lindenbach, C. M. Rice, V. Simon, D. D. Ho, M. Zavolan, and T. Tuschl. 2005. Identification of microRNAs of the herpesvirus family. Nat. Methods 2:269-276.
-
(2005)
Nat. Methods
, vol.2
, pp. 269-276
-
-
Pfeffer, S.1
Sewer, A.2
Lagos-Quintana, M.3
Sheridan, R.4
Sander, C.5
Grasser, F.A.6
Van Dyk, L.F.7
Ho, C.K.8
Shuman, S.9
Chien, M.10
Russo, J.J.11
Ju, J.12
Randall, G.13
Lindenbach, B.D.14
Rice, C.M.15
Simon, V.16
Ho, D.D.17
Zavolan, M.18
Tuschl, T.19
-
21
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan, R., H. Vaucheret, J. Trejo, and D. P. Bartel. 2006. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 20:3407-3425.
-
(2006)
Genes Dev.
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
22
-
-
27744543008
-
Protection from interferon-induced apoptosis by Epstein-Barr virus small RNAs is not mediated by inhibition of PKR
-
Ruf, I. K., K. A. Lackey, S. Warudkar, and J. T. Sample. 2005. Protection from interferon-induced apoptosis by Epstein-Barr virus small RNAs is not mediated by inhibition of PKR. J. Virol. 79:14562-14569.
-
(2005)
J. Virol.
, vol.79
, pp. 14562-14569
-
-
Ruf, I.K.1
Lackey, K.A.2
Warudkar, S.3
Sample, J.T.4
-
23
-
-
34547132780
-
Host immune system gene targeting by a viral miRNA
-
DOI 10.1126/science.1140956
-
Stern-Ginossar, N., N. Elefant, A. Zimmermann, D. G. Wolf, N. Saleh, M. Biton, E. Horwitz, Z. Prokocimer, M. Prichard, G. Hahn, D. Goldman-Wohl, C. Greenfield, S. Yagel, H. Hengel, Y. Altuvia, H. Margalit, and O. Mandelboim. 2007. Host immune system gene targeting by a viral miRNA. Science 317:376-381. (Pubitemid 47106378)
-
(2007)
Science
, vol.317
, Issue.5836
, pp. 376-381
-
-
Stern-Ginossar, N.1
Elefant, N.2
Zimmermann, A.3
Wolf, D.G.4
Saleh, N.5
Biton, M.6
Horwitz, E.7
Prokocimer, Z.8
Prichard, M.9
Hahn, G.10
Goldman-Wohl, D.11
Greenfield, C.12
Yagel, S.13
Hengel, H.14
Altuvia, Y.15
Margalit, H.16
Mandelboim, O.17
-
24
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar, R., X. Zhou, Y. Zheng, W. Zhang, and J.-K. Zhu. 2008. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol. 8:25
-
(2008)
BMC Plant Biol.
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
Zhang, W.4
Zhu, J.-K.5
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