-
1
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V, (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
3
-
-
21244448730
-
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development
-
Cell. 2005/07/02 ed
-
Leaman D, Chen PY, Fak J, Yalcin A, Pearce M, et al. (2005) Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development. pp. 1097-1108 Cell. 2005/07/02 ed.
-
(2005)
, pp. 1097-1108
-
-
Leaman, D.1
Chen, P.Y.2
Fak, J.3
Yalcin, A.4
Pearce, M.5
-
4
-
-
0037694970
-
The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism
-
Xu P, Vernooy SY, Guo M, Hay BA, (2003) The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism. Curr Biol 13: 790-795.
-
(2003)
Curr Biol
, vol.13
, pp. 790-795
-
-
Xu, P.1
Vernooy, S.Y.2
Guo, M.3
Hay, B.A.4
-
5
-
-
34250851115
-
A microRNA component of the p53 tumour suppressor network
-
He L, He X, Lim LP, de Stanchina E, Xuan Z, et al. (2007) A microRNA component of the p53 tumour suppressor network. Nature 447: 1130-1134.
-
(2007)
Nature
, vol.447
, pp. 1130-1134
-
-
He, L.1
He, X.2
Lim, L.P.3
de Stanchina, E.4
Xuan, Z.5
-
6
-
-
32644435565
-
Drosophila lacking microRNA miR-278 are defective in energy homeostasis
-
Teleman AA, Maitra S, Cohen SM, (2006) Drosophila lacking microRNA miR-278 are defective in energy homeostasis. Genes Dev 20: 417-422.
-
(2006)
Genes Dev
, vol.20
, pp. 417-422
-
-
Teleman, A.A.1
Maitra, S.2
Cohen, S.M.3
-
7
-
-
33748928159
-
The diverse functions of microRNAs in animal development and disease
-
Kloosterman WP, Plasterk RH, (2006) The diverse functions of microRNAs in animal development and disease. Dev Cell 11: 441-450.
-
(2006)
Dev Cell
, vol.11
, pp. 441-450
-
-
Kloosterman, W.P.1
Plasterk, R.H.2
-
8
-
-
34147147595
-
The evolution of animal microRNA function
-
Niwa R, Slack FJ, (2007) The evolution of animal microRNA function. Curr Opin Genet Dev 17: 145-150.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 145-150
-
-
Niwa, R.1
Slack, F.J.2
-
9
-
-
33845608152
-
The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
-
Sempere LF, Cole CN, McPeek MA, Peterson KJ, (2006) The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol 306: 575-588.
-
(2006)
J Exp Zool B Mol Dev Evol
, vol.306
, pp. 575-588
-
-
Sempere, L.F.1
Cole, C.N.2
McPeek, M.A.3
Peterson, K.J.4
-
10
-
-
42949146575
-
MicroRNAs and the advent of vertebrate morphological complexity
-
Heimberg AM, Sempere LF, Moy VN, Donoghue PC, Peterson KJ, (2008) MicroRNAs and the advent of vertebrate morphological complexity. Proc Natl Acad Sci U S A 105: 2946-2950.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2946-2950
-
-
Heimberg, A.M.1
Sempere, L.F.2
Moy, V.N.3
Donoghue, P.C.4
Peterson, K.J.5
-
11
-
-
33644772270
-
The expansion of the metazoan microRNA repertoire
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, et al. (2006) The expansion of the metazoan microRNA repertoire. BMC Genomics 7: 25.
-
(2006)
BMC Genomics
, vol.7
, pp. 25
-
-
Hertel, J.1
Lindemeyer, M.2
Missal, K.3
Fried, C.4
Tanzer, A.5
-
12
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, et al. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
-
13
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
Wightman B, Ha I, Ruvkun G, (1993) Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
-
(1993)
Cell
, vol.75
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
14
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, et al. (2005) Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120: 21-24.
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van de Belt, J.3
Wienholds, E.4
Plasterk, R.H.5
-
15
-
-
58249118839
-
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
-
Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, et al. (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics 9: 593.
-
(2008)
BMC Genomics
, vol.9
, pp. 593
-
-
Szittya, G.1
Moxon, S.2
Santos, D.M.3
Jing, R.4
Fevereiro, M.P.5
-
16
-
-
74049164557
-
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
-
Chen X, Li Q, Wang J, Guo X, Jiang X, et al. (2009) Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 10: R78.
-
(2009)
Genome Biol
, vol.10
-
-
Chen, X.1
Li, Q.2
Wang, J.3
Guo, X.4
Jiang, X.5
-
17
-
-
67649885497
-
Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
-
Wei Y, Chen S, Yang P, Ma Z, Kang L, (2009) Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 10: R6.
-
(2009)
Genome Biol
, vol.10
-
-
Wei, Y.1
Chen, S.2
Yang, P.3
Ma, Z.4
Kang, L.5
-
18
-
-
61849171653
-
Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori
-
Zhang Y, Zhou X, Ge X, Jiang J, Li M, et al. (2009) Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori. PLoS One 4: e4677.
-
(2009)
PLoS One
, vol.4
-
-
Zhang, Y.1
Zhou, X.2
Ge, X.3
Jiang, J.4
Li, M.5
-
19
-
-
77956297226
-
Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis
-
Liang C, Zhang X, Zou J, Xu D, Su F, et al. (2010) Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PLoS One 5: e10698.
-
(2010)
PLoS One
, vol.5
-
-
Liang, C.1
Zhang, X.2
Zou, J.3
Xu, D.4
Su, F.5
-
20
-
-
33644941742
-
Asymmetric craniofacial remodeling and lateralized behavior in larval flatfish
-
Schreiber AM, (2006) Asymmetric craniofacial remodeling and lateralized behavior in larval flatfish. J Exp Biol 209: 610-621.
-
(2006)
J Exp Biol
, vol.209
, pp. 610-621
-
-
Schreiber, A.M.1
-
21
-
-
0001873245
-
The role of thyroid hormone in tissue development in metamorphosing flounder
-
Inui Y, Yamano K, Miwa S, (1995) The role of thyroid hormone in tissue development in metamorphosing flounder. Aquaculture 135: 87-98.
-
(1995)
Aquaculture
, vol.135
, pp. 87-98
-
-
Inui, Y.1
Yamano, K.2
Miwa, S.3
-
22
-
-
76049129954
-
MicroRNA-dependent metamorphosis in hemimetabolan insects
-
Gomez-Orte E, Belles X, (2009) MicroRNA-dependent metamorphosis in hemimetabolan insects. Proc Natl Acad Sci U S A 106: 21678-21682.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 21678-21682
-
-
Gomez-Orte, E.1
Belles, X.2
-
23
-
-
45849084987
-
Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs
-
Caygill EE, Johnston LA, (2008) Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs. Curr Biol 18: 943-950.
-
(2008)
Curr Biol
, vol.18
, pp. 943-950
-
-
Caygill, E.E.1
Johnston, L.A.2
-
24
-
-
11844283981
-
Stage-specific expression of microRNAs during Xenopus development
-
Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, et al. (2005) Stage-specific expression of microRNAs during Xenopus development. FEBS Lett 579: 318-324.
-
(2005)
FEBS Lett
, vol.579
, pp. 318-324
-
-
Watanabe, T.1
Takeda, A.2
Mise, K.3
Okuno, T.4
Suzuki, T.5
-
25
-
-
22344449952
-
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
-
Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, et al. (2005) The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev 19: 1288-1293.
-
(2005)
Genes Dev
, vol.19
, pp. 1288-1293
-
-
Chen, P.Y.1
Manninga, H.2
Slanchev, K.3
Chien, M.4
Russo, J.J.5
-
26
-
-
44949123711
-
RNAi-mediated gene silencing in fishes?
-
Schyth BD, (2008) RNAi-mediated gene silencing in fishes? Journal of Fish Biology 72: 1890-1906.
-
(2008)
Journal of Fish Biology
, vol.72
, pp. 1890-1906
-
-
Schyth, B.D.1
-
27
-
-
77954955227
-
A microRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss)
-
Salem M, Xiao C, Womack J, Rexroad CE 3rd, Yao J, (2010) A microRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Mar Biotechnol (NY) 12: 410-429.
-
(2010)
Mar Biotechnol (NY)
, vol.12
, pp. 410-429
-
-
Salem, M.1
Xiao, C.2
Womack, J.3
Rexroad 3rd, C.E.4
Yao, J.5
-
28
-
-
84855692620
-
miRBase website
-
Available:. Accessed 2011 July 11
-
miRBase website. Available: http://www.mirbase.org/cgi-bin/browse.pl. Accessed 2011 July 11.
-
-
-
-
29
-
-
79959196413
-
mRNA/microRNA Profile at the Metamorphic Stage of Olive Flounder (Paralichthys olivaceus)
-
Xie C, Xu S, Yang L, Ke Z, Xing J, et al. (2011) mRNA/microRNA Profile at the Metamorphic Stage of Olive Flounder (Paralichthys olivaceus). Comp Funct Genomics 2011: 256038.
-
(2011)
Comp Funct Genomics
, vol.2011
, pp. 256038
-
-
Xie, C.1
Xu, S.2
Yang, L.3
Ke, Z.4
Xing, J.5
-
30
-
-
24644476482
-
MicroRNA identification based on sequence and structure alignment
-
Wang X, Zhang J, Li F, Gu J, He T, et al. (2005) MicroRNA identification based on sequence and structure alignment. Bioinformatics 21: 3610-3614.
-
(2005)
Bioinformatics
, vol.21
, pp. 3610-3614
-
-
Wang, X.1
Zhang, J.2
Li, F.3
Gu, J.4
He, T.5
-
32
-
-
3142729150
-
Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
-
Okamura K, Ishizuka A, Siomi H, Siomi MC, (2004) Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev 18: 1655-1666.
-
(2004)
Genes Dev
, vol.18
, pp. 1655-1666
-
-
Okamura, K.1
Ishizuka, A.2
Siomi, H.3
Siomi, M.C.4
-
33
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
34
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33: e179.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
-
35
-
-
32644439132
-
MicroRNA expression profiling of single whole embryonic stem cells
-
Tang F, Hajkova P, Barton SC, Lao K, Surani MA, (2006) MicroRNA expression profiling of single whole embryonic stem cells. Nucleic Acids Res 34: e9.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Tang, F.1
Hajkova, P.2
Barton, S.C.3
Lao, K.4
Surani, M.A.5
-
36
-
-
41649089309
-
The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution
-
Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution. Nat Struct Mol Biol 15: 354-363.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.T.5
-
37
-
-
0042814908
-
Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution?
-
Pasquinelli AE, McCoy A, Jimenez E, Salo E, Ruvkun G, et al. (2003) Expression of the 22 nucleotide let-7 heterochronic RNA throughout the Metazoa: a role in life history evolution? Evol Dev 5: 372-378.
-
(2003)
Evol Dev
, vol.5
, pp. 372-378
-
-
Pasquinelli, A.E.1
McCoy, A.2
Jimenez, E.3
Salo, E.4
Ruvkun, G.5
-
38
-
-
0034597777
-
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
-
Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, et al. (2000) Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408: 86-89.
-
(2000)
Nature
, vol.408
, pp. 86-89
-
-
Pasquinelli, A.E.1
Reinhart, B.J.2
Slack, F.3
Martindale, M.Q.4
Kuroda, M.I.5
-
39
-
-
34547596338
-
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
-
Jiang P, Wu H, Wang W, Ma W, Sun X, et al. (2007) MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res 35: W339-344.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 339-344
-
-
Jiang, P.1
Wu, H.2
Wang, W.3
Ma, W.4
Sun, X.5
-
40
-
-
34447309058
-
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
-
Ng KL, Mishra SK, (2007) De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics 23: 1321-1330.
-
(2007)
Bioinformatics
, vol.23
, pp. 1321-1330
-
-
Ng, K.L.1
Mishra, S.K.2
-
41
-
-
77954385461
-
MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease
-
Townley-Tilson WH, Callis TE, Wang D, (2010) MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease. Int J Biochem Cell Biol 42: 1252-1255.
-
(2010)
Int J Biochem Cell Biol
, vol.42
, pp. 1252-1255
-
-
Townley-Tilson, W.H.1
Callis, T.E.2
Wang, D.3
-
42
-
-
33846153786
-
MicroRNA-1 and microRNA-133a expression are decreased during skeletal muscle hypertrophy
-
McCarthy JJ, Esser KA, (2007) MicroRNA-1 and microRNA-133a expression are decreased during skeletal muscle hypertrophy. J Appl Physiol 102: 306-313.
-
(2007)
J Appl Physiol
, vol.102
, pp. 306-313
-
-
McCarthy, J.J.1
Esser, K.A.2
-
43
-
-
77249178130
-
MicroRNA-25 functions in regulation of pigmentation by targeting the transcription factor MITF in Alpaca (Lama pacos) skin melanocytes
-
Zhu Z, He J, Jia X, Jiang J, Bai R, et al. (2010) MicroRNA-25 functions in regulation of pigmentation by targeting the transcription factor MITF in Alpaca (Lama pacos) skin melanocytes. Domest Anim Endocrinol 38: 200-209.
-
(2010)
Domest Anim Endocrinol
, vol.38
, pp. 200-209
-
-
Zhu, Z.1
He, J.2
Jia, X.3
Jiang, J.4
Bai, R.5
-
44
-
-
72049090924
-
Protein kinase C-dependent upregulation of miR-203 induces the differentiation of human keratinocytes
-
Sonkoly E, Wei T, Pavez Lorie E, Suzuki H, Kato M, et al. (2010) Protein kinase C-dependent upregulation of miR-203 induces the differentiation of human keratinocytes. J Invest Dermatol 130: 124-134.
-
(2010)
J Invest Dermatol
, vol.130
, pp. 124-134
-
-
Sonkoly, E.1
Wei, T.2
Pavez Lorie, E.3
Suzuki, H.4
Kato, M.5
-
45
-
-
77951977270
-
Dual appearance of xanthophores, and ontogenetic changes in other pigment cells during early development of Japanese flounder Paralichthys olivaceus
-
Mitsuo N, Tadahisa S, Masato A, Reiji M, (2010) Dual appearance of xanthophores, and ontogenetic changes in other pigment cells during early development of Japanese flounder Paralichthys olivaceus. Fisheries Science (Tokyo) 76: 243-250.
-
(2010)
Fisheries Science (Tokyo)
, vol.76
, pp. 243-250
-
-
Mitsuo, N.1
Tadahisa, S.2
Masato, A.3
Reiji, M.4
-
46
-
-
79960775364
-
Histological study on the skin of Japanese flounder Paralichthys olivaceus
-
Zhu J, Zhang X, Gao T, (2005) Histological study on the skin of Japanese flounder Paralichthys olivaceus. Journal of Ocean University of China 4: 145-151.
-
(2005)
Journal of Ocean University of China
, vol.4
, pp. 145-151
-
-
Zhu, J.1
Zhang, X.2
Gao, T.3
-
47
-
-
85024267566
-
The early life history of a flounder Paralichthys olivaceus
-
Minami T, (1982) The early life history of a flounder Paralichthys olivaceus. Nippon Suisan Gakkaishi 48: 1581-1588.
-
(1982)
Nippon Suisan Gakkaishi
, vol.48
, pp. 1581-1588
-
-
Minami, T.1
-
48
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
49
-
-
40449123208
-
microParaflo biochip for nucleic acid and protein analysis
-
Zhu Q, Hong A, Sheng N, Zhang X, Matejko A, et al. (2007) microParaflo biochip for nucleic acid and protein analysis. Methods Mol Biol 382: 287-312.
-
(2007)
Methods Mol Biol
, vol.382
, pp. 287-312
-
-
Zhu, Q.1
Hong, A.2
Sheng, N.3
Zhang, X.4
Matejko, A.5
-
50
-
-
1842683164
-
In situ synthesis of oligonucleotide microarrays
-
Gao X, Gulari E, Zhou X, (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73: 579-596.
-
(2004)
Biopolymers
, vol.73
, pp. 579-596
-
-
Gao, X.1
Gulari, E.2
Zhou, X.3
-
51
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
|