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Volumn 40, Issue 14, 2012, Pages 6660-6672

Sequence and expression analysis of gaps in human chromosome 20

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; LYSINE; UNTRANSLATED RNA;

EID: 84864953110     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks302     Document Type: Article
Times cited : (5)

References (59)
  • 2
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium. (2004) Finishing the euchromatic sequence of the human genome. Nature, 431. 931-945.
    • (2004) Nature , vol.431 , pp. 931-945
  • 3
    • 1942499458 scopus 로고    scopus 로고
    • An assessment of the sequence gaps: Unfinished business in a finished human genome
    • DOI 10.1038/nrg1322
    • Eichler, E.E., Clark, R.A. and She, X. (2004) An assessment of the sequence gaps: unfinished business in a finished human genome. Nat. Rev. Genet., 5, 345-354. (Pubitemid 38529406)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.5 , pp. 345-354
    • Eichler, E.E.1    Clark, R.A.2    She, X.3
  • 11
    • 0015923136 scopus 로고
    • Selective transformation of B lymphocytes by E.B. virus
    • Pattengale, P., Smith, R. and Gerber, P. (1973) Selective transformation of B lymphocytes by E.B. virus. Lancet, 302, 93-94.
    • (1973) Lancet , vol.302 , pp. 93-94
    • Pattengale, P.1    Smith, R.2    Gerber, P.3
  • 14
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen, S. and Skaletsky, H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 15
    • 51649102357 scopus 로고    scopus 로고
    • Touchdown PCR for increased specificity and sensitivity in PCR amplification
    • Korbie, D.J. and Mattick, J.S. (2008) Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nat. Protoc., 3, 1452-1456.
    • (2008) Nat. Protoc. , vol.3 , pp. 1452-1456
    • Korbie, D.J.1    Mattick, J.S.2
  • 16
    • 84865071031 scopus 로고    scopus 로고
    • Corpus callosum abnormalities, intellectual disability, speech impairment, and autism in patients with haploinsufficiency of ARID1B
    • July (doi: 10.1111/j.1399-0004.2011.01755.x; epub ahead of print).
    • Halgren, C., Kjaergaard, S., Bak, M., Hansen, C., El-Schich, Z., Anderson, C.M., Henriksen, K.F., Hjalgrim, H., Kirchhoff, M.S., Bijlsma, E.K. et al. (2011) Corpus callosum abnormalities, intellectual disability, speech impairment, and autism in patients with haploinsufficiency of ARID1B. Clin. Genet., July 29 (doi: 10.1111/j.1399-0004.2011.01755.x; epub ahead of print).
    • (2011) Clin. Genet. , vol.29
    • Halgren, C.1    Kjaergaard, S.2    Bak, M.3    Hansen, C.4    El-Schich, Z.5    Anderson, C.M.6    Henriksen, K.F.7    Hjalgrim, H.8    Kirchhoff, M.S.9    Bijlsma, E.K.10
  • 18
    • 84856480471 scopus 로고    scopus 로고
    • Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution
    • Bradley, R.K., Merkin, J., Lambert, N.J. and Burge, C.B. (2012) Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution. PLoS Biol., 10, e1001229.
    • (2012) PLoS Biol. , vol.10
    • Bradley, R.K.1    Merkin, J.2    Lambert, N.J.3    Burge, C.B.4
  • 20
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 21
    • 55749094855 scopus 로고    scopus 로고
    • An integrated software system for analyzing ChIP-chip and ChIP-seq data
    • Ji, H., Jiang, H., Ma, W., Johnson, D.S., Myers, R.M. and Wong, W.H. (2008) An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat. Biotech., 26, 1293-1300.
    • (2008) Nat. Biotech. , vol.26 , pp. 1293-1300
    • Ji, H.1    Jiang, H.2    Ma, W.3    Johnson, D.S.4    Myers, R.M.5    Wong, W.H.6
  • 22
    • 38449091863 scopus 로고    scopus 로고
    • Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplification
    • Silahtaroglu, A.N., Nolting, D., Dyrskjot, L., Berezikov, E., Moller, M., Tommerup, N. and Kauppinen, S. (2007) Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplification. Nat. Protoc., 2, 2520-2528.
    • (2007) Nat. Protoc. , vol.2 , pp. 2520-2528
    • Silahtaroglu, A.N.1    Nolting, D.2    Dyrskjot, L.3    Berezikov, E.4    Moller, M.5    Tommerup, N.6    Kauppinen, S.7
  • 23
    • 0025743732 scopus 로고
    • Touchdown PCR to circumvent spurious priming during gene amplification
    • Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K. and Mattick, J.S. (1991) Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res., 19, 4008-4008.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4008-4008
    • Don, R.H.1    Cox, P.T.2    Wainwright, B.J.3    Baker, K.4    Mattick, J.S.5
  • 25
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A. and Speleman, F. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol., 3, RESEARCH0034.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 26
  • 27
    • 84856907490 scopus 로고    scopus 로고
    • Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila
    • Andersen, K.L. and Nielsen, H. (2012) Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila. Nucleic Acids Res., 40, 1267-1281.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1267-1281
    • Andersen, K.L.1    Nielsen, H.2
  • 30
    • 0345603004 scopus 로고    scopus 로고
    • The CpG Island Searcher: A new www resource
    • Takai, D. and Jones, P.A. (2003) The CpG island searcher: a new WWW resource. In Silico Biol., 3, 235-240. (Pubitemid 37493047)
    • (2003) Silico Biology , vol.3 , Issue.3 , pp. 235-240
    • Takai, D.1    Jones, P.A.2
  • 31
    • 66349117139 scopus 로고    scopus 로고
    • MapView: Visualization of short reads alignment on a desktop computer
    • Bao, H., Guo, H., Wang, J., Zhou, R., Lu, X. and Shi, S. (2009) MapView: visualization of short reads alignment on a desktop computer. Bioinformatics, 25, 1554-1555.
    • (2009) Bioinformatics , vol.25 , pp. 1554-1555
    • Bao, H.1    Guo, H.2    Wang, J.3    Zhou, R.4    Lu, X.5    Shi, S.6
  • 32
    • 79952848915 scopus 로고    scopus 로고
    • FEAST: Sensitive local alignment with multiple rates of evolution
    • Hudek, A.K. and Brown, D.G. (2011) FEAST: sensitive local alignment with multiple rates of evolution. IEEE/ACM Trans. Comput. Biol. Bioinform., 8, 698-709.
    • (2011) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.8 , pp. 698-709
    • Hudek, A.K.1    Brown, D.G.2
  • 34
    • 0030034795 scopus 로고    scopus 로고
    • A Hidden Markov Model approach to variation among sites in rate of evolution
    • Felsenstein, J. and Churchill, G.A. (1996) A Hidden Markov Model approach to variation among sites in rate of evolution. Mol. Biol. Evol., 13, 93-104. (Pubitemid 26012458)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.1 , pp. 93-104
    • Felsenstein, J.1    Churchill, G.A.2
  • 37
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki, E.P., Kolbe, D.L. and Eddy, S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 38
    • 32544452741 scopus 로고    scopus 로고
    • CMfinder - A covariance model based RNA motif finding algorithm
    • DOI 10.1093/bioinformatics/btk008
    • Yao, Z., Weinberg, Z. and Ruzzo, W.L. (2006) CMfinder-a covariance model based RNA motif finding algorithm. Bioinformatics, 22, 445-452. (Pubitemid 43231419)
    • (2006) Bioinformatics , vol.22 , Issue.4 , pp. 445-452
    • Yao, Z.1    Weinberg, Z.2    Ruzzo, W.L.3
  • 39
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • Eddy, S.R. and Durbin, R. (1994) RNA sequence analysis using covariance models. Nucleic Acids Res., 22, 2079-2088. (Pubitemid 24192908)
    • (1994) Nucleic Acids Research , vol.22 , Issue.11 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 41
    • 43349107538 scopus 로고    scopus 로고
    • Using RepeatMasker to identify repetitive elements in genomic sequences
    • Chapter 4, Unit 4 10
    • Chen, N. (2004) Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinformatics, Chapter 4, Unit 4 10.
    • (2004) Curr. Protoc. Bioinformatics
    • Chen, N.1
  • 43
    • 57149092605 scopus 로고    scopus 로고
    • DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression
    • Yagi, S., Hirabayashi, K., Sato, S., Li, W., Takahashi, Y., Hirakawa, T., Wu, G., Hattori, N., Ohgane, J., Tanaka, S. et al. (2008) DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression. Genome Res., 18, 1969-1978.
    • (2008) Genome Res. , vol.18 , pp. 1969-1978
    • Yagi, S.1    Hirabayashi, K.2    Sato, S.3    Li, W.4    Takahashi, Y.5    Hirakawa, T.6    Wu Hattori, G.N.7    Ohgane, J.8    Tanaka, S.9
  • 44
    • 0035416510 scopus 로고    scopus 로고
    • The neuronatin gene resides in a "micro-imprinted" domain on human chromosome 20q11.2
    • DOI 10.1006/geno.2001.6612
    • Evans, H.K., Wylie, A.A., Murphy, S.K. and Jirtle, R.L. (2001) The neuronatin gene resides in a 'Micro-imprinted' domain on human chromosome 20q11.2. Genomics, 77, 99-104. (Pubitemid 32826491)
    • (2001) Genomics , vol.77 , Issue.1-2 , pp. 99-104
    • Evans, H.K.1    Wylie, A.A.2    Murphy, S.K.3    Jirtle, R.L.4
  • 49
    • 2942637528 scopus 로고    scopus 로고
    • Distinct spatiotemporal expression of SAPAP transcripts in the developing rat brain: A novel dendritically localized mRNA
    • DOI 10.1016/j.molbrainres.2004.03.014, PII S0169328X04001548
    • Kindler, S., Rehbein, M., Classen, B., Richter, D. and Bö ckers, T.M. (2004) Distinct spatiotemporal expression of SAPAP transcripts in the developing rat brain: a novel dendritically localized mRNA. Brain Res. Mol. Brain Res., 126, 14-21. (Pubitemid 38781159)
    • (2004) Molecular Brain Research , vol.126 , Issue.1 , pp. 14-21
    • Kindler, S.1    Rehbein, M.2    Classen, B.3    Richter, D.4    Bockers, T.M.5
  • 51
    • 0022423208 scopus 로고
    • Concordance of experimentally mapped or predicted Z-DNA sites with positions of selected alternating purine-pyrimidine tracts
    • Konopka, A.K., Reiter, J., Jung, M., Zarling, D.A. and Jovin, T.M. (1985) Concordance of experimentally mapped or predicted Z-DNA sites with positions of selected alternating purine-pyrimidine tracts. Nucleic Acids Res., 13, 1683-1701.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 1683-1701
    • Konopka, A.K.1    Reiter, J.2    Jung, M.3    Zarling, D.A.4    Jovin, T.M.5
  • 54
    • 84856492490 scopus 로고    scopus 로고
    • Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
    • Ng, S.-Y., Johnson, R. and Stanton, L.W. (2012) Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors. EMBO J, 31, 522-533.
    • (2012) EMBO J , vol.31 , pp. 522-533
    • Ng, S.-Y.1    Johnson, R.2    Stanton, L.W.3
  • 55
    • 0033765362 scopus 로고    scopus 로고
    • Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
    • Rivas, E. and Eddy, S.R. (2000) Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics, 16, 583-605.
    • (2000) Bioinformatics , vol.16 , pp. 583-605
    • Rivas, E.1    Eddy, S.R.2
  • 57
    • 80052339890 scopus 로고    scopus 로고
    • From structure prediction to genomic screens for novel non-coding RNAs
    • Gorodkin, J. and Hofacker, I.L. (2011) From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs. PLoS Comput. Biol., 7, e1002100.
    • (2011) PLoS Comput. Biol. , vol.7
    • Gorodkin, J.1    Hofacker, I.L.2
  • 59
    • 32644439243 scopus 로고    scopus 로고
    • Experimental approaches to identify non-coding RNAs
    • DOI 10.1093/nar/gkj469
    • Hü ttenhofer, A. and Vogel, J. (2006) Experimental approaches to identify non-coding RNAs. Nucleic Acids Res., 34, 635-646. (Pubitemid 43240250)
    • (2006) Nucleic Acids Research , vol.34 , Issue.2 , pp. 635-646
    • Huttenhofer, A.1    Vogel, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.