-
1
-
-
0002135777
-
The mitochondrial genome of animals
-
In: Macintyre RJ, editor, New York: Plenum
-
Brown WM (1985) The mitochondrial genome of animals. In: Macintyre RJ, editor. Molecular Evolution Genetics. New York: Plenum.
-
(1985)
Molecular Evolution Genetics
-
-
Brown, W.M.1
-
2
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore JL, ((1999)) Animal mitochondrial genomes. Nucleic Acids Res 27:1767-1780.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
3
-
-
0027083319
-
Animal mitochondrial DNA: structure and evolution
-
Wolstenholme DR, ((1992)) Animal mitochondrial DNA: structure and evolution. Int Rev Cytol 141:173-216.
-
(1992)
Int Rev Cytol
, vol.141
, pp. 173-216
-
-
Wolstenholme, D.R.1
-
4
-
-
0024351697
-
Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy
-
Boyce TM, Zwick ME, Aquadro CF, ((1989)) Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy. Genetics 123:825-836.
-
(1989)
Genetics
, vol.123
, pp. 825-836
-
-
Boyce, T.M.1
Zwick, M.E.2
Aquadro, C.F.3
-
5
-
-
0019322288
-
Extensive diversity among Drosophilla species with respect to nucleotide sequences within the adenine + thymine-rich region of mitochondrial DNA molecules
-
Fauron CMR, Wolestenholme DR, ((1980)) Extensive diversity among Drosophilla species with respect to nucleotide sequences within the adenine + thymine-rich region of mitochondrial DNA molecules. Nucleic Acids Res 8:2439-2452.
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 2439-2452
-
-
Fauron, C.M.R.1
Wolestenholme, D.R.2
-
6
-
-
0030811686
-
Nucleotide sequence divergence in the A+T-rich region of mitochondrial DNA in Drosophila simulans and Drosophila mauritiana
-
Inohira K, Hara T, Matsuura ET, ((1997)) Nucleotide sequence divergence in the A+T-rich region of mitochondrial DNA in Drosophila simulans and Drosophila mauritiana. Mol Biol Evol 14:814-822.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 814-822
-
-
Inohira, K.1
Hara, T.2
Matsuura, E.T.3
-
7
-
-
0034962223
-
Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiate
-
Doston EM, Beard CB, ((2001)) Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiate. Insect Mol Biol 10:205-215.
-
(2001)
Insect Mol Biol
, vol.10
, pp. 205-215
-
-
Doston, E.M.1
Beard, C.B.2
-
8
-
-
3843069926
-
The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects
-
Bae JS, Kim I, Sohn HD, Jin BR, ((2004)) The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects. Mol Phylogenet Evol 32:978-985.
-
(2004)
Mol Phylogenet Evol
, vol.32
, pp. 978-985
-
-
Bae, J.S.1
Kim, I.2
Sohn, H.D.3
Jin, B.R.4
-
9
-
-
1642539104
-
Evidence of multiple acquisition of Arsenophonus by whitefly species (Sternorryncha: Aleyrodidae)
-
Thao ML, Baumann P, ((2004)) Evidence of multiple acquisition of Arsenophonus by whitefly species (Sternorryncha: Aleyrodidae). Curr Microbiol 48:140-144.
-
(2004)
Curr Microbiol
, vol.48
, pp. 140-144
-
-
Thao, M.L.1
Baumann, P.2
-
10
-
-
25144447548
-
Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements
-
Lavrov DV, Lang BF, ((2005)) Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements. Syst Biol 54:651-659.
-
(2005)
Syst Biol
, vol.54
, pp. 651-659
-
-
Lavrov, D.V.1
Lang, B.F.2
-
11
-
-
0020546157
-
Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code
-
De Bruijn MHL, ((1983)) Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code. Nature 304:234-241.
-
(1983)
Nature
, vol.304
, pp. 234-241
-
-
de Bruijn, M.H.L.1
-
12
-
-
0022271984
-
The mitochondrial DNA molecule of Drosophila yakuba: Nucleotide sequence, gene organization and genetic code
-
Clary DO, Wolstenholme DR, ((1985)) The mitochondrial DNA molecule of Drosophila yakuba: Nucleotide sequence, gene organization and genetic code. J Mol Evol 22:252-271.
-
(1985)
J Mol Evol
, vol.22
, pp. 252-271
-
-
Clary, D.O.1
Wolstenholme, D.R.2
-
13
-
-
77956093244
-
Mitochondrial genomics in Orthoptera using MOSAS
-
Sheffield NC, Hiatt KD, Valentine MC, Song H, Whiting MF, ((2010)) Mitochondrial genomics in Orthoptera using MOSAS. Mitochondr DNA 21:87-104.
-
(2010)
Mitochondr DNA
, vol.21
, pp. 87-104
-
-
Sheffield, N.C.1
Hiatt, K.D.2
Valentine, M.C.3
Song, H.4
Whiting, M.F.5
-
14
-
-
84857809841
-
Novel gene rearrangements in the mitochondrial genome of a webspinner, Aposthonia japonica (Insecta: Embioptera)
-
Kômoto N, Yukuhiro K, Tomita S, ((2012)) Novel gene rearrangements in the mitochondrial genome of a webspinner, Aposthonia japonica (Insecta: Embioptera). Genome 55:222-233.
-
(2012)
Genome
, vol.55
, pp. 222-233
-
-
Kômoto, N.1
Yukuhiro, K.2
Tomita, S.3
-
15
-
-
0034527982
-
Elastic joints in dermapteran hind wings: materials and wing folding
-
Hass F, Gorb SN, Wootton RJ, ((2000)) Elastic joints in dermapteran hind wings: materials and wing folding. Arthropod Struct Dev 29:137-146.
-
(2000)
Arthropod Struct Dev
, vol.29
, pp. 137-146
-
-
Hass, F.1
Gorb, S.N.2
Wootton, R.J.3
-
17
-
-
0002439450
-
Superclass Hexapoda
-
Carpenter FM, ((1992)) Superclass Hexapoda. In: Kaesler RL, editor. Treatise on Invertebrate Paleontology Part R, Arthropoda 4. Kansas: Geological Society of America, Boulder, Colorado, & University of Kansas. pp. 279-655.
-
(1992)
, pp. 279-655
-
-
Carpenter, F.M.1
Kaesler, R.L.2
-
18
-
-
0002529503
-
The comparative external morphology and affinities of the Dermaptera
-
Giles ET, ((1963)) The comparative external morphology and affinities of the Dermaptera. Trans Royal Entomol Soc Lond 115:95-164.
-
(1963)
Trans Royal Entomol Soc Lond
, vol.115
, pp. 95-164
-
-
Giles, E.T.1
-
19
-
-
0004267112
-
-
3rd edition. Dordrecht: Springer
-
Cedric G (2005) Entomology. 3rd edition. Dordrecht: Springer.
-
(2005)
Entomology
-
-
Cedric, G.1
-
22
-
-
0000404433
-
Fossil history and the evolution of hexapod structures
-
In: Naumann ID, Carne PB, Lawrence JF, Nielsen ES, Spradberry JP, Taylor RW, Whitten MJ, Littlejohn MJ, editors, Paris: Melbourne Univ Press
-
Kukalová-Peck J (1991) Fossil history and the evolution of hexapod structures. In: Naumann ID, Carne PB, Lawrence JF, Nielsen ES, Spradberry JP, Taylor RW, Whitten MJ, Littlejohn MJ, editors. The Insects of Australia: A Textbook for Students and Research Workers. Paris: Melbourne Univ Press. 141-179.
-
(1991)
The Insects of Australia: A Textbook for Students and Research Workers
, pp. 141-179
-
-
Kukalová-Peck, J.1
-
23
-
-
79959767782
-
Monophyletic Polyneoptera recovered by wing base structure
-
Yoshizawa K, ((2011)) Monophyletic Polyneoptera recovered by wing base structure. Syst Entomol 6:377-394.
-
(2011)
Syst Entomol
, vol.6
, pp. 377-394
-
-
Yoshizawa, K.1
-
24
-
-
3242721251
-
Aligned 18S and insect phylogeny
-
Kjer KM, ((2004)) Aligned 18S and insect phylogeny. Syst Biol 53:506-514.
-
(2004)
Syst Biol
, vol.53
, pp. 506-514
-
-
Kjer, K.M.1
-
25
-
-
27544464722
-
Mantophasmatodea and phylogeny of the lower neopterous insects
-
Terry MD, Whiting MF, ((2005)) Mantophasmatodea and phylogeny of the lower neopterous insects. Cladistics 21:240-257.
-
(2005)
Cladistics
, vol.21
, pp. 240-257
-
-
Terry, M.D.1
Whiting, M.F.2
-
26
-
-
26444470409
-
Aligned 18S for Zoraptera (Insecta): phylogenetic position and molecular evolution
-
Yoshizawa K, Johnson KP, ((2005)) Aligned 18S for Zoraptera (Insecta): phylogenetic position and molecular evolution. Mol Phylogenet Evol 37:572-580.
-
(2005)
Mol Phylogenet Evol
, vol.37
, pp. 572-580
-
-
Yoshizawa, K.1
Johnson, K.P.2
-
27
-
-
34249295067
-
A molecular phylogeny of Hexapoda
-
Kjer KM, Carle FL, Litman J, Ware J, ((2006)) A molecular phylogeny of Hexapoda. Arthropod Syst Phylogeny 64:35-44.
-
(2006)
Arthropod Syst Phylogeny
, vol.64
, pp. 35-44
-
-
Kjer, K.M.1
Carle, F.L.2
Litman, J.3
Ware, J.4
-
28
-
-
0034958911
-
The phylogeny of the extant hexapod orders
-
Wheeler WC, Whiting M, Wheeler QD, Carpenter JM, ((2001)) The phylogeny of the extant hexapod orders. Cladistics 17:113-169.
-
(2001)
Cladistics
, vol.17
, pp. 113-169
-
-
Wheeler, W.C.1
Whiting, M.2
Wheeler, Q.D.3
Carpenter, J.M.4
-
29
-
-
84864684313
-
Habitats and distribution of rare endangered earwigs Challia fletcheri Burr in Korea
-
Yoon IB, Moon TY, ((1996)) Habitats and distribution of rare endangered earwigs Challia fletcheri Burr in Korea. Korean J Entomol 26:403-409.
-
(1996)
Korean J Entomol
, vol.26
, pp. 403-409
-
-
Yoon, I.B.1
Moon, T.Y.2
-
30
-
-
84864676621
-
Insects collected on Danjo-gunto Islands (part I)
-
Adachi K, ((2003)) Insects collected on Danjo-gunto Islands (part I). Shin Tsukushi no Konchu 7:41-74.
-
(2003)
Shin Tsukushi No Konchu
, vol.7
, pp. 41-74
-
-
Adachi, K.1
-
31
-
-
0019444843
-
tRNA punctuation model of RNA processing in human mitochondria
-
Ojala D, Montoya J, Attardi G, ((1981)) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470-474.
-
(1981)
Nature
, vol.290
, pp. 470-474
-
-
Ojala, D.1
Montoya, J.2
Attardi, G.3
-
32
-
-
33847708768
-
The complete mitochondrial genome sequence of the Mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability
-
Fenn JD, Cameron SL, Whiting MF, ((2007)) The complete mitochondrial genome sequence of the Mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability. Insect Mol Biol 16:239-252.
-
(2007)
Insect Mol Biol
, vol.16
, pp. 239-252
-
-
Fenn, J.D.1
Cameron, S.L.2
Whiting, M.F.3
-
33
-
-
28844486413
-
Mitochondrial genomics and the new insect order Mantophasmatodea
-
Cameron SL, Barker SC, Whiting MF, ((2006)) Mitochondrial genomics and the new insect order Mantophasmatodea. Mol Phylogenet Evol 38:274-279.
-
(2006)
Mol Phylogenet Evol
, vol.38
, pp. 274-279
-
-
Cameron, S.L.1
Barker, S.C.2
Whiting, M.F.3
-
34
-
-
34249816507
-
Mitochondrial genomic comparisons of the subterranean termites from the genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae)
-
Cameron SL, Whiting MF, ((2007)) Mitochondrial genomic comparisons of the subterranean termites from the genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae). Genome 50:188-202.
-
(2007)
Genome
, vol.50
, pp. 188-202
-
-
Cameron, S.L.1
Whiting, M.F.2
-
35
-
-
65449166016
-
The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus
-
Ma C, Liu C, Yang P, Kang L, ((2009)) The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus. BMC Genomics 10:156.
-
(2009)
BMC Genomics
, vol.10
, pp. 156
-
-
Ma, C.1
Liu, C.2
Yang, P.3
Kang, L.4
-
36
-
-
0028909805
-
Evolution and structural conservation of the control region of insect mitochondrial DNA
-
Zhang DX, Szymura JM, Hewitt GM, ((1995)) Evolution and structural conservation of the control region of insect mitochondrial DNA. J Mol Evol 40:382-391.
-
(1995)
J Mol Evol
, vol.40
, pp. 382-391
-
-
Zhang, D.X.1
Szymura, J.M.2
Hewitt, G.M.3
-
37
-
-
33645116402
-
Replication origin of mitochondrial DNA in insects
-
Saito S, Tamura K, Aotsuka T, ((2005)) Replication origin of mitochondrial DNA in insects. Genetics 171:1695-1705.
-
(2005)
Genetics
, vol.171
, pp. 1695-1705
-
-
Saito, S.1
Tamura, K.2
Aotsuka, T.3
-
38
-
-
55049131972
-
Mitochondrial genome organization and phylogeny of two vespid wasps
-
Cameron SL, Dowton M, Castro LR, Ruberu K, Whiting MF, et al. ((2008)) Mitochondrial genome organization and phylogeny of two vespid wasps. Genome 51:800-808.
-
(2008)
Genome
, vol.51
, pp. 800-808
-
-
Cameron, S.L.1
Dowton, M.2
Castro, L.R.3
Ruberu, K.4
Whiting, M.F.5
-
39
-
-
0023256559
-
Slipped-strand mispairing: a major mechanism for DNA sequence evolution
-
Levinson G, Gutman GA, ((1987)) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
40
-
-
57649183569
-
Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses
-
Masta SE, Longhorn SJ, Boore JL, ((2009)) Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses. Mol Phylogenet Evol 50:117-128.
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 117-128
-
-
Masta, S.E.1
Longhorn, S.J.2
Boore, J.L.3
-
41
-
-
76649102127
-
Complete nucleotide sequence and organization of the mitochondrial genome of endangered Eumenis autonoe (Lepidoptera: Nymphalidae)
-
Kim MJ, Wan X, Kim KG, Hwang JS, Kim I, ((2010)) Complete nucleotide sequence and organization of the mitochondrial genome of endangered Eumenis autonoe (Lepidoptera: Nymphalidae). Afr J Biotechnol 9:735-754.
-
(2010)
Afr J Biotechnol
, vol.9
, pp. 735-754
-
-
Kim, M.J.1
Wan, X.2
Kim, K.G.3
Hwang, J.S.4
Kim, I.5
-
42
-
-
0030976320
-
Strand asymmetries in DNA evolution
-
Francino MP, Ochman H, ((1997)) Strand asymmetries in DNA evolution. Trends Genet 13:240-245.
-
(1997)
Trends Genet
, vol.13
, pp. 240-245
-
-
Francino, M.P.1
Ochman, H.2
-
43
-
-
19044389661
-
Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences
-
Hassanin A, Leger N, Deutch J, ((2005)) Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences. Syst Biol 54:277-298.
-
(2005)
Syst Biol
, vol.54
, pp. 277-298
-
-
Hassanin, A.1
Leger, N.2
Deutch, J.3
-
44
-
-
0031950474
-
Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
-
Reyes A, Gissi C, Pesole G, Saccone C, ((1998)) Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol Biol Evol 15:957-966.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 957-966
-
-
Reyes, A.1
Gissi, C.2
Pesole, G.3
Saccone, C.4
-
45
-
-
0032860013
-
Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
-
Saccone C, De Giorgi C, Gissi C, Graziano P, Reyes R, ((1999)) Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene 238:195-209.
-
(1999)
Gene
, vol.238
, pp. 195-209
-
-
Saccone, C.1
de Giorgi, C.2
Gissi, C.3
Graziano, P.4
Reyes, R.5
-
46
-
-
77958574984
-
New views on strand asymmetry in insect mitochondrial genomes
-
Wei SJ, Shi M, Chen XX, Sharkey MJ, van Achterberg C, et al. ((2010)) New views on strand asymmetry in insect mitochondrial genomes. PLoS ONE 5:e12708.
-
(2010)
PLoS ONE
, vol.5
-
-
Wei, S.J.1
Shi, M.2
Chen, X.X.3
Sharkey, M.J.4
van Achterberg, C.5
-
47
-
-
0031012089
-
Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
-
Macey JR, Larson A, Ananjeva NB, Fang Z, Papenfuss TJ, ((1997)) Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol Biol Evol 14:91-104.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 91-104
-
-
Macey, J.R.1
Larson, A.2
Ananjeva, N.B.3
Fang, Z.4
Papenfuss, T.J.5
-
48
-
-
0035358769
-
Intramitochondrial recombination: is it why some mitochondrial genes sleep around?
-
Dowton M, Campbell NJH, ((2001)) Intramitochondrial recombination: is it why some mitochondrial genes sleep around? Trends Ecol Evol 16:269-271.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 269-271
-
-
Dowton, M.1
Campbell, N.J.H.2
-
49
-
-
33745824730
-
Mitochondrial tRNA gene translocations in highly eusocial bees
-
Silvestre D, Arias MC, ((2006)) Mitochondrial tRNA gene translocations in highly eusocial bees. Genet Mol Biol 29:572-575.
-
(2006)
Genet Mol Biol
, vol.29
, pp. 572-575
-
-
Silvestre, D.1
Arias, M.C.2
-
50
-
-
67649347914
-
Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral
-
Dowton M, Cameron SL, Dowavic JI, Austin AD, Whiting MF, ((2009)) Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral. Mol Biol Evol 26:1607-1617.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1607-1617
-
-
Dowton, M.1
Cameron, S.L.2
Dowavic, J.I.3
Austin, A.D.4
Whiting, M.F.5
-
51
-
-
65349117585
-
The complete mitochondrial genome of Diadegma semiclausum (Hymenoptera: Ichneumonidae) indicates extensive independent evolutionary events
-
Wei SJ, Shi M, He JH, Sharkey M, Chen XX, ((2009)) The complete mitochondrial genome of Diadegma semiclausum (Hymenoptera: Ichneumonidae) indicates extensive independent evolutionary events. Genome 52:308-319.
-
(2009)
Genome
, vol.52
, pp. 308-319
-
-
Wei, S.J.1
Shi, M.2
He, J.H.3
Sharkey, M.4
Chen, X.X.5
-
52
-
-
0033062252
-
Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the Hymenoptera
-
Dowton M, Austin A, ((1999)) Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the Hymenoptera. Mol Biol Evol 16:298-309.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 298-309
-
-
Dowton, M.1
Austin, A.2
-
53
-
-
0000533828
-
Phylogeny of extant hexapods
-
In: Naumann ID, Carne PB, Lawrence JF, Nielsen ES, Spradberry JP, Taylor RW, Whitten MJ, Littlejohn MJ, editors, Carlton: Melbourne Univ Press
-
Kristensen NP ((1991)) Phylogeny of extant hexapods. In: Naumann ID, Carne PB, Lawrence JF, Nielsen ES, Spradberry JP, Taylor RW, Whitten MJ, Littlejohn MJ, editors. The Insects of Australia: A Textbook for Students and Research Workers. Carlton: Melbourne Univ Press. 125-140.
-
(1991)
The Insects of Australia: A Textbook for Students and Research Workers
, pp. 125-140
-
-
Kristensen, N.P.1
-
54
-
-
77957008885
-
The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota
-
Lin CP, Chen MY, Huang JP, ((2010)) The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota. Gene 468:20-29.
-
(2010)
Gene
, vol.468
, pp. 20-29
-
-
Lin, C.P.1
Chen, M.Y.2
Huang, J.P.3
-
55
-
-
77956947503
-
The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera
-
Zhang YY, Xuan WJ, Zhao JL, Zhu CD, Jiang GF, ((2010)) The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera. Mol Biol Rep 37:3509-3516.
-
(2010)
Mol Biol Rep
, vol.37
, pp. 3509-3516
-
-
Zhang, Y.Y.1
Xuan, W.J.2
Zhao, J.L.3
Zhu, C.D.4
Jiang, G.F.5
-
56
-
-
70450270772
-
A phylogenomic approach to resolve the basal pterygote divergence
-
Simon S, Strauss S, von Haeseler A, Hadrys H, ((2009)) A phylogenomic approach to resolve the basal pterygote divergence. Mol Biol Evol 26:2719-2730.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2719-2730
-
-
Simon, S.1
Strauss, S.2
von Haeseler, A.3
Hadrys, H.4
-
57
-
-
13444259388
-
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K, ((2004)) TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4:18.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 18
-
-
Jobb, G.1
von Haeseler, A.2
Strimmer, K.3
-
58
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave C, Preparata G, Saccone C, Serio G, ((1984)) A new method for calculating evolutionary substitution rates. J Mol Evol 20:86-93.
-
(1984)
J Mol Evol
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
60
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P, ((1998)) Consed: A graphical tool for sequence finishing. Genome Res 8:195-202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
61
-
-
0031574072
-
The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, ((1997)) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:173-216.
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 173-216
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
62
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR, ((1997)) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
63
-
-
0029049426
-
Patterns of nucleotide composition at four fold degenerate sites of animal mitochondrial genomes
-
Perna NT, Kocher TD, ((1995)) Patterns of nucleotide composition at four fold degenerate sites of animal mitochondrial genomes. J Mol Evol 41:353-358.
-
(1995)
J Mol Evol
, vol.41
, pp. 353-358
-
-
Perna, N.T.1
Kocher, T.D.2
-
64
-
-
0004248459
-
PAUP* Phylogenetic analysis using parsimony (*and other methods) ver 410b
-
Swofford DL, ((2002)) PAUP* Phylogenetic analysis using parsimony (*and other methods) ver 410b. Sunderland: Sinauer Associates.
-
(2002)
Sunderland: Sinauer Associates
-
-
Swofford, D.L.1
-
65
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G, ((1999)) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573-580.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
66
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M, ((2003)) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
67
-
-
33746312281
-
Phylogenetic relationships and evolution of insects
-
In: Cracraft J, Donoghue MJ, editors. NewYork: Oxford University Press
-
Willmann R (2004) Phylogenetic relationships and evolution of insects. In: Cracraft J, Donoghue MJ, editors. Assembling the Tree of life. NewYork: Oxford University Press. 330-344.
-
(2004)
Assembling the Tree of life
, pp. 330-344
-
-
Willmann, R.1
-
68
-
-
33744534015
-
The mitochondrial genome of the bristletail Petrobius brevistylis (Archaeognatha: Machilidae)
-
Podsiadlowski L, Bartolomaeus T, ((2006)) The mitochondrial genome of the bristletail Petrobius brevistylis (Archaeognatha: Machilidae). Insect Mol Biol 15:253-258.
-
(2006)
Insect Mol Biol
, vol.15
, pp. 253-258
-
-
Podsiadlowski, L.1
Bartolomaeus, T.2
-
69
-
-
56849088374
-
The complete mitochondrial genome of the bristletail Pedetontus silvestrii (Archaeognatha: Machilidae) and an examination of mitochondrial gene variability within four bristletails
-
Zhang JY, Song DX, Zhou KY, ((2008)) The complete mitochondrial genome of the bristletail Pedetontus silvestrii (Archaeognatha: Machilidae) and an examination of mitochondrial gene variability within four bristletails. Ann Entomol Soc Am 101:1131-1136.
-
(2008)
Ann Entomol Soc Am
, vol.101
, pp. 1131-1136
-
-
Zhang, J.Y.1
Song, D.X.2
Zhou, K.Y.3
-
70
-
-
24044511196
-
Mitochondrial genomes suggest that hexapods and crustacean are mutually paraphyletic
-
Cook CE, Yue Q, Akam M, ((2005)) Mitochondrial genomes suggest that hexapods and crustacean are mutually paraphyletic. Proc R Soc B 272:1295-1304.
-
(2005)
Proc R Soc B
, vol.272
, pp. 1295-1304
-
-
Cook, C.E.1
Yue, Q.2
Akam, M.3
-
71
-
-
67349273596
-
The complete mitochondrial genome of Atelura formicaria (Hexapoda: Zygentoma) and the phylogenetic relationships of basal insects
-
Comandi S, Carapelli A, Podsiadlowski L, Nardi F, Frati F, ((2009)) The complete mitochondrial genome of Atelura formicaria (Hexapoda: Zygentoma) and the phylogenetic relationships of basal insects. Gene 439:25-34.
-
(2009)
Gene
, vol.439
, pp. 25-34
-
-
Comandi, S.1
Carapelli, A.2
Podsiadlowski, L.3
Nardi, F.4
Frati, F.5
-
72
-
-
84986272116
-
Relationships between hexapods and crustaceans based on four mitochondrial genes
-
Carapelli A, Nardi F, Dallai R, Boore JL, Liò P, et al. ((2005)) Relationships between hexapods and crustaceans based on four mitochondrial genes. Crustacean Issues 16:295-306.
-
(2005)
Crustacean Issues
, vol.16
, pp. 295-306
-
-
Carapelli, A.1
Nardi, F.2
Dallai, R.3
Boore, J.L.4
Liò, P.5
-
73
-
-
33749039177
-
The mitochondrial genomes of Campodea fragilis and Campodea lubbocki (Hexapoda: Diplura): high genetic divergence in a morphologically uniform taxon
-
Podsiadlowski L, Carapelli A, Nardi F, Dallai R, Koch M, ((2006)) The mitochondrial genomes of Campodea fragilis and Campodea lubbocki (Hexapoda: Diplura): high genetic divergence in a morphologically uniform taxon. Gene 381:49-61.
-
(2006)
Gene
, vol.381
, pp. 49-61
-
-
Podsiadlowski, L.1
Carapelli, A.2
Nardi, F.3
Dallai, R.4
Koch, M.5
-
74
-
-
0034932095
-
The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations
-
Nardi F, Carapelli A, Fanciulli PP, Dallai R, Frati F, ((2001)) The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations. Mol Biol Evol 18:1293-1304.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1293-1304
-
-
Nardi, F.1
Carapelli, A.2
Fanciulli, P.P.3
Dallai, R.4
Frati, F.5
-
75
-
-
0037459349
-
Hexapod origins: monophyletic or paraphyletic?
-
Nardi F, Spinsanti G, Boore JL, Carapelli A, Dallai R, et al. ((2003)) Hexapod origins: monophyletic or paraphyletic? Science 299:1887-1889.
-
(2003)
Science
, vol.299
, pp. 1887-1889
-
-
Nardi, F.1
Spinsanti, G.2
Boore, J.L.3
Carapelli, A.4
Dallai, R.5
-
76
-
-
34648851374
-
Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea
-
Carapelli A, Liò P, Nardi F, van der Wath E, Frati F, ((2007)) Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea. BMC Evol Biol 7 (Suppl 2): S8.
-
(2007)
BMC Evol Biol
, vol.7
-
-
Carapelli, A.1
Liò, P.2
Nardi, F.3
van der Wath, E.4
Frati, F.5
-
77
-
-
70350179971
-
A mitochondrial genome phylogeny of the Neuropterida (lace-wings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders
-
Cameron SL, Sullivan J, Song H, Miller KB, Whiting FW, ((2009)) A mitochondrial genome phylogeny of the Neuropterida (lace-wings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders. Zool Scr 38:575-590.
-
(2009)
Zool Scr
, vol.38
, pp. 575-590
-
-
Cameron, S.L.1
Sullivan, J.2
Song, H.3
Miller, K.B.4
Whiting, F.W.5
-
78
-
-
0043123111
-
Multiple alignment of coding DNA from aligned amino acid sequences
-
Wernersson R, Pedersen AG, ((2003)) Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res 31:3537-3539.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3537-3539
-
-
Wernersson, R.1
Pedersen, A.G.2
-
79
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J, ((2000)) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
80
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H, ((1974)) A new look at the statistical model identification. IEEE Trans Autom Contr 19:716-723.
-
(1974)
IEEE Trans Autom Contr
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
81
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D, Crandal KA, ((1998)) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandal, K.A.2
-
82
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, ((2006)) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
83
-
-
0034849408
-
MrBayes: Bayesian inference of phylogeny
-
Huelsenbeck JP, Ronquist F, ((2001)) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
84
-
-
80052709094
-
Reconstructing intraordinal relationships in Lepidoptera using mitochondrial genome data with the description of two newly sequenced lycaenids, Spindasis takanonis and Protantigius superans (Lepidoptera: Lycaenidae)
-
Kim MJ, Kang AR, Jeong HC, Kim KG, Kim I, ((2011)) Reconstructing intraordinal relationships in Lepidoptera using mitochondrial genome data with the description of two newly sequenced lycaenids, Spindasis takanonis and Protantigius superans (Lepidoptera: Lycaenidae). Mol Phylogenet Evol 61:436-445.
-
(2011)
Mol Phylogenet Evol
, vol.61
, pp. 436-445
-
-
Kim, M.J.1
Kang, A.R.2
Jeong, H.C.3
Kim, K.G.4
Kim, I.5
-
85
-
-
41049111540
-
Inferring confidence sets of possibly misspecified gene trees
-
Strimmer K, Rambaut A, ((2002)) Inferring confidence sets of possibly misspecified gene trees. Proc Biol Sci 269:137-142.
-
(2002)
Proc Biol Sci
, vol.269
, pp. 137-142
-
-
Strimmer, K.1
Rambaut, A.2
-
86
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J, ((1981)) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
87
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order in Hominoidea
-
Kishino H, Hasegawa M, ((1989)) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order in Hominoidea. J Mol Evol 29:170-179.
-
(1989)
J Mol Evol
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
88
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H, Hasegawa M, ((1999)) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
89
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H, ((2002)) An approximately unbiased test of phylogenetic tree selection. Syst Biol 51:492-508.
-
(2002)
Syst Biol
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
|