-
1
-
-
0037062433
-
Mammalian mitogenomic relationships and the root of the eutherian tree
-
Arnason, U. et al. 2002 Mammalian mitogenomic relationships and the root of the eutherian tree. Proc. Natl Acad. Sci. USA 99, 8151-8156.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8151-8156
-
-
Arnason, U.1
-
2
-
-
7044278747
-
Phylogenetic relationships of basal hexapods among the mandibulate arthropods: A cladistic analysis based on comparative morphological characters
-
Bitsch, C. & Bitsch, J. 2004 Phylogenetic relationships of basal hexapods among the mandibulate arthropods: a cladistic analysis based on comparative morphological characters. Zool. Scr. 33, 511-550.
-
(2004)
Zool. Scr.
, vol.33
, pp. 511-550
-
-
Bitsch, C.1
Bitsch, J.2
-
3
-
-
0028976102
-
Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
-
Boore, J. L., Collins, T. M., Stanton, D., Daehler, L. L. & Brown, W. M. 1995 Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 316, 163-165.
-
(1995)
Nature
, vol.316
, pp. 163-165
-
-
Boore, J.L.1
Collins, T.M.2
Stanton, D.3
Daehler, L.L.4
Brown, W.M.5
-
4
-
-
0032537194
-
Gene translocation links insects and crustaceans
-
Boore, J. L., Lavrov, D. V. & Brown, W. M. 1998 Gene translocation links insects and crustaceans. Nature 392, 667-668.
-
(1998)
Nature
, vol.392
, pp. 667-668
-
-
Boore, J.L.1
Lavrov, D.V.2
Brown, W.M.3
-
6
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana, J. 2000 Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17, 540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
7
-
-
0042121237
-
Multiple sequence alignment with the CLUSTAL series of programs
-
Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G. & Thompson, J. D. 2003 Multiple sequence alignment with the CLUSTAL series of programs. Nucleic Acids Res. 31, 3497-3500.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
8
-
-
0036983137
-
Phylogenetic relationships and placement of the Empidoidea (Diptera: Brachycera) based on 28S rDNA and EF-1alpha sequences
-
Collins, K. P. & Wiegmann, B. M. 2002a Phylogenetic relationships and placement of the Empidoidea (Diptera: Brachycera) based on 28S rDNA and EF-1alpha sequences. Insect Syst. Evol. 33, 421-444.
-
(2002)
Insect Syst. Evol.
, vol.33
, pp. 421-444
-
-
Collins, K.P.1
Wiegmann, B.M.2
-
9
-
-
0036980239
-
Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences
-
Collins, K. P. & Wiegmann, B. M. 2002b Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences. Insect Syst. Evol. 33, 445-456.
-
(2002)
Insect Syst. Evol.
, vol.33
, pp. 445-456
-
-
Collins, K.P.1
Wiegmann, B.M.2
-
10
-
-
0035873974
-
Hox genes and the phylogeny of the arthropods
-
Cook, C. E., Smith, M. L., Telford, M. J., Bastianello, A. & Akam, M. 2001 Hox genes and the phylogeny of the arthropods. Curr. Biol. 11, 759-763.
-
(2001)
Curr. Biol.
, vol.11
, pp. 759-763
-
-
Cook, C.E.1
Smith, M.L.2
Telford, M.J.3
Bastianello, A.4
Akam, M.5
-
11
-
-
0027398565
-
The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization
-
Crozier, R. H. & Crozier, Y. C. 1993 The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics 133, 97.
-
(1993)
Genetics
, vol.133
, pp. 97
-
-
Crozier, R.H.1
Crozier, Y.C.2
-
12
-
-
0141685723
-
Comment on 'hexapod origins: Monophyletic or paraphyletic'
-
Delsuc, R, Phillips, M. & Penny, D. 2003 Comment on 'hexapod origins: monophyletic or paraphyletic'. Science 301, 1482d.
-
(2003)
Science
, vol.301
-
-
Delsuc, R.1
Phillips, M.2
Penny, D.3
-
13
-
-
0040030261
-
Are Hexapoda members of the Crustacea? Evidence from comparative developmental genetics
-
Deutsch, J. 2001 Are Hexapoda members of the Crustacea? Evidence from comparative developmental genetics. Annales de la Société Entomologique de France 37, 41-49.
-
(2001)
Annales de la Société Entomologique de France
, vol.37
, pp. 41-49
-
-
Deutsch, J.1
-
14
-
-
0035630659
-
Are the insects terrestrial crustaceans? A discussion of some new facts and arguments and the proposal of the proper name 'tetraconata' for the monophyletic unit Crustacea+ Hexapoda
-
Dohle, W. 2001 Are the insects terrestrial crustaceans? A discussion of some new facts and arguments and the proposal of the proper name 'tetraconata' for the monophyletic unit Crustacea+ Hexapoda. Annales de la Société Entomologique de France 37, 85-104.
-
(2001)
Annales de la Société Entomologique de France
, vol.37
, pp. 85-104
-
-
Dohle, W.1
-
16
-
-
0028976103
-
Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods
-
Friedrich, M. & Tautz, D. 1995 Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods. Nature 376, 165-167.
-
(1995)
Nature
, vol.376
, pp. 165-167
-
-
Friedrich, M.1
Tautz, D.2
-
17
-
-
0010302063
-
Mitochondrial genes collectively suggest the paraphyly of Crustacea with respect to Insecta
-
García-Machado, E., Pempera, M., Dennebouy, N., Oliva-Saurez, M., Mounolou, J.-C. & Monnerot, M. 1999 Mitochondrial genes collectively suggest the paraphyly of Crustacea with respect to Insecta. J. Mol. Evol. 49, 142-149.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 142-149
-
-
García-Machado, E.1
Pempera, M.2
Dennebouy, N.3
Oliva-Saurez, M.4
Mounolou, J.-C.5
Monnerot, M.6
-
18
-
-
0036922905
-
Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates
-
Gerberding, M., Browne, W. E. & Patel, N. H. 2002 Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates. Development 129, 5789-5801.
-
(2002)
Development
, vol.129
, pp. 5789-5801
-
-
Gerberding, M.1
Browne, W.E.2
Patel, N.H.3
-
19
-
-
0034351387
-
Likelihood-based test of topologies in phylogenetics
-
Goldman, N., Anderson, J. P. & Rodrigo, A. G. 2000 Likelihood-based test of topologies in phylogenetics. Syst. Biol. 49, 652-670.
-
(2000)
Syst. Biol.
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
20
-
-
26244463822
-
A contribution to the morphology of the limbs and mouthparts of crustaceans and insects
-
Hansen, H. J. 1893 A contribution to the morphology of the limbs and mouthparts of crustaceans and insects. Ann. Mag. Nat. Hist. Ser. 67, 417-434.
-
(1893)
Ann. Mag. Nat. Hist. Ser.
, vol.67
, pp. 417-434
-
-
Hansen, H.J.1
-
21
-
-
2442667686
-
Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous
-
Harrison, G. L. A., McLenachan, P. A., Phillips, M. J., Slack, K. E., Cooper, A. & Penny, D. 2004 Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous. Mol. Biol. Evol. 21, 974-983.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 974-983
-
-
Harrison, G.L.A.1
McLenachan, P.A.2
Phillips, M.J.3
Slack, K.E.4
Cooper, A.5
Penny, D.6
-
22
-
-
19044389661
-
Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences
-
Hassanin, A., Léger, N. & Deutsch, J. 2005 Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences. Syst. Biol. 54, 277-298.
-
(2005)
Syst. Biol.
, vol.54
, pp. 277-298
-
-
Hassanin, A.1
Léger, N.2
Deutsch, J.3
-
23
-
-
38249015852
-
Reflections on the phylogenetic position of the Cephalocarida
-
Hessler, R. R. 1992 Reflections on the phylogenetic position of the Cephalocarida. Acta Zool. 73, 315-316.
-
(1992)
Acta Zool.
, vol.73
, pp. 315-316
-
-
Hessler, R.R.1
-
24
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P. & Ronquist, F. 2001 MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
25
-
-
0034979888
-
One-step PCR amplification of complete arthropod mitochondrial genomes
-
Hwang, U. W., Park, C. J., Yong, T. S. & Kim, W. 2001 One-step PCR amplification of complete arthropod mitochondrial genomes. Mol. Phylogenet. Evol. 19, 345-352.
-
(2001)
Mol. Phylogenet. Evol.
, vol.19
, pp. 345-352
-
-
Hwang, U.W.1
Park, C.J.2
Yong, T.S.3
Kim, W.4
-
26
-
-
0035635770
-
Mandibular mechanisms and the evolution of hexapods
-
Koch, M. 2001 Mandibular mechanisms and the evolution of hexapods. Annales de la Société Entomologique de France 37, 129-174.
-
(2001)
Annales de la Société Entomologique de France
, vol.37
, pp. 129-174
-
-
Koch, M.1
-
28
-
-
0036146407
-
Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss
-
Lavrov, D. V., Boore, J. L. & Brown, W. M. 2002 Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Mol. Biol. Evol. 19, 163-169.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 163-169
-
-
Lavrov, D.V.1
Boore, J.L.2
Brown, W.M.3
-
29
-
-
1442283747
-
Phylogenetic position of the Pentastomida and (pan) crustacean relationships
-
Lavrov, D. V., Brown, W. M. & Boore, J. L. 2004 Phylogenetic position of the Pentastomida and (pan) crustacean relationships. Proc. R. Soc. B 271, 537-544.
-
(2004)
Proc. R. Soc. B
, vol.271
, pp. 537-544
-
-
Lavrov, D.V.1
Brown, W.M.2
Boore, J.L.3
-
30
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P. J., Steel, M. A., Hendy, M. D. & Penny, D. 1994 Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
31
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T. M. & Eddy, S. R. 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
0347457283
-
Ecdysozoan phylogeny and Bayesian inference: First use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin
-
Mallatt, J. M., Garey, J. R. & Shultz, J. W. 2004 Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol. Phylogenet. Evol. 31, 178-191.
-
(2004)
Mol. Phylogenet. Evol.
, vol.31
, pp. 178-191
-
-
Mallatt, J.M.1
Garey, J.R.2
Shultz, J.W.3
-
34
-
-
0034932095
-
The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: Evidence for heteroplasmy and tRNA translocations
-
Nardi, F., Carapelli, A., Fanciulli, P. P., Dallai, R. & Frati, F. 2001 The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations. Mol. Biol. Evol. 18, 1293-1304.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1293-1304
-
-
Nardi, F.1
Carapelli, A.2
Fanciulli, P.P.3
Dallai, R.4
Frati, F.5
-
35
-
-
0037459349
-
Hexapod origins: Monophyletic or paraphyletic?
-
Nardi, F., Spinsanti, G., Boore, J. L., Carapelli, A., Dallai, R. & Frati, F. 2003a Hexapod origins: monophyletic or paraphyletic? Science 299, 1887-1889.
-
(2003)
Science
, vol.299
, pp. 1887-1889
-
-
Nardi, F.1
Spinsanti, G.2
Boore, J.L.3
Carapelli, A.4
Dallai, R.5
Frati, F.6
-
36
-
-
0141685723
-
Response to comment on 'Hexapod origins: Monophyletic or paraphyletic'
-
Nardi, F., Spinsanti, G., Boore, J. L., Carapelli, A., Dallai, R. & Frati, F. 2003b Response to comment on 'Hexapod origins: monophyletic or paraphyletic'. Science 301, 1482e.
-
(2003)
Science
, vol.301
-
-
Nardi, F.1
Spinsanti, G.2
Boore, J.L.3
Carapelli, A.4
Dallai, R.5
Frati, F.6
-
37
-
-
1842505164
-
The mitochondrial genome of the house centipede Scutigera and the monophyly versus paraphyly of myriapods
-
Negrisolo, E., Minelli, A. & Valle, G. 2004 The mitochondrial genome of the house centipede Scutigera and the monophyly versus paraphyly of myriapods. Mol. Biol. Evol. 21, 770-780.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 770-780
-
-
Negrisolo, E.1
Minelli, A.2
Valle, G.3
-
38
-
-
0141721426
-
The root of the mammalian tree inferred from whole mitochondrial genomes
-
Phillips, M. J. & Penny, D. 2003 The root of the mammalian tree inferred from whole mitochondrial genomes. Mol. Phylogenet. Evol. 28, 171-185.
-
(2003)
Mol. Phylogenet. Evol.
, vol.28
, pp. 171-185
-
-
Phillips, M.J.1
Penny, D.2
-
39
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada, D. & Crandall, K. A. 1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
40
-
-
0037359951
-
The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes
-
Shao, R. & Barker, S. C. 2003 The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol. Biol. Evol. 20, 362-370.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 362-370
-
-
Shao, R.1
Barker, S.C.2
-
41
-
-
0035038162
-
Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera)
-
Shao, R., Campbell, N. J. & Barker, S. C. 2001 Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Mol. Biol. Evol. 18, 858-865.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 858-865
-
-
Shao, R.1
Campbell, N.J.2
Barker, S.C.3
-
42
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H. & Hasegawa, M. 1999 Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
43
-
-
1242352069
-
How meaningful are Bayesian support values?
-
Simmons, M. P., Pickett, K. M. & Miya, M. 2004 How meaningful are Bayesian support values? Mol. Biol. Evol. 21, 188-199.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 188-199
-
-
Simmons, M.P.1
Pickett, K.M.2
Miya, M.3
-
44
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree toplogies
-
Strimmer, K. & von Haeseler, A. 1996 Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree toplogies. Mol. Biol. Evol. 13, 964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
45
-
-
0031002417
-
Likelihood-mapping: A simple method to visualize phylogenetic content
-
Strimmer, K. & von Haeseler, A. 1997 Likelihood-mapping: a simple method to visualize phylogenetic content. Proc. Natl Acad. Sci. USA 94, 6815-6819.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6815-6819
-
-
Strimmer, K.1
Von Haeseler, A.2
-
47
-
-
0038191149
-
Combined large and small subunit ribosomal RNA phylogenies support a basal position of the acoelomorph flatworms
-
doi:10.1098/rspb.2003.2342
-
Telford, M. J., Lockyer, A. E., Cartwright-Finch, C. & Littlewood, D. T. J. 2003 Combined large and small subunit ribosomal RNA phylogenies support a basal position of the acoelomorph flatworms. Proc. R. Soc. B 270, 1077-1083. (doi:10.1098/rspb.2003.2342.)
-
(2003)
Proc. R. Soc. B
, vol.270
, pp. 1077-1083
-
-
Telford, M.J.1
Lockyer, A.E.2
Cartwright-Finch, C.3
Littlewood, D.T.J.4
-
48
-
-
26244451639
-
The evolution of the class Insecta
-
Tillyard, R. J. 1930 The evolution of the class Insecta. Pap. Proc. R. Soc. Tas. 1-89.
-
(1930)
Pap. Proc. R. Soc. Tas.
, pp. 1-89
-
-
Tillyard, R.J.1
-
49
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S. & Goldman, N. 2001 A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
50
-
-
0034035067
-
The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are malacostracan crustaceans more closely related to insects than to branchiopods?
-
Wilson, K., Cahill, V., Ballment, E. & Benzie, J. 2000 The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods? Mol. Biol. Evol. 17, 863-874.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 863-874
-
-
Wilson, K.1
Cahill, V.2
Ballment, E.3
Benzie, J.4
|