Complete nucleotide sequence and organization of the mitogenome of endangered Eumenis autonoe (Lepidoptera: Nymphalidae)

African Journal of Biotechnology

Volumn 9, Issue 5, 2010, Pages 735-754

  Kim, Min Jee ^a   Wan, Xinlong ^a   Kim, Ki Gyoung ^b   Hwang, Jae Sam ^c   Kim, Iksoo ^a  

^a Chonnam National University   (South Korea)

^b National Institute of Biological Resources   (South Korea)

^c National Institute of Animal Science   (South Korea)

Author keywords

Complete mitogenome; Eumenis autonoe; Lepidopteran phylogeny; Macrolepidoptera; Mitochondrial DNA; Papilionoidea

Indexed keywords

ISOLEUCINE; METHIONINE; MITOCHONDRIAL DNA; TRANSFER RNA;

ARTICLE; CONTROLLED STUDY; ENDANGERED SPECIES; EUMENIS AUTONOE; GENE; LEPIDOPTERA; MITOCHONDRIAL DNA REPLICATION; MITOCHONDRIAL GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE;

ANIMALIA; AUTONOE; BOMBYCOIDEA; GEOMETROIDEA; HALLA; HEXAPODA; LEPIDOPTERA; LYCAENIDAE; MACROLEPIDOPTERA; NOCTUOIDEA; NYMPHALIDAE; PAPILIONIDAE; PAPILIONOIDEA; PIERIDAE; PYRALOIDEA; TORTRICOIDEA;

EID: 76649102127     PISSN: None     EISSN: 16845315     Source Type: Journal    
DOI: 10.5897/ajb09.1486     Document Type: Article

References (59)

1. Abascal F, Posada D, Zardoya R (2007). MtArt: a new model of amino acid replacement for arthropoda. Mol. Biol. Evol. 24: 1-5.
2. Abascal F, Zardoya R, Posada D (2005). ProTest: selection of best-fit odels of protein evolution. Bioinformatics 21: 2104-2105.
3. Adachi J, Hasegawa M (1996). Model of amino acid substitution in proteins encoded by mitochondrial DNA. J. Mol. Evol. 42: 459-468.
4. Akaike H (1974) A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19: 716-723.
5. Anderson S, Bankier AT, Barrell BG, de Bruijin MHL, Droujn ARJ, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1981). Sequence and organization of the human mitochondrial genome. Nature 290: 457-465.
6. Beard CB, Mills D, Collins FH (1993). The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organizationand comparisons with mitochondrial sequences of other insects. Insect Mol. Biol. 2: 103-124.
7. Boore JL, Lavrov D, Brown WM (1998). Gene translocation links insects and crustaceans. Nature, 393: 667-668.
8. Cameron SL, Whiting MF (2007). Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae). Genome, 50: 188-202.
9. Cameron SL, Whiting MF (2008). The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae) and an examination of mitochondrial gene variability within butterflies and moths. Gene, 408: 112-123.
10. Castresana J (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic tool. Curr. Opin. Genet. Dev. 8: 668-674.
11. Cha SY, Yoon HJ, Lee EM, Yoon MH, Hwang JS, Jin BR, Han YS, Kim I (2007). The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee, Bombus ignitus (Hymenoptera: Apidae). Gene, 392: 206-220.
12. Clary DO, Wolstenholme DR (1985). The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code. J. Mol. Evol. 22: 252-271.
13. Clary DO, Wolstenholme DR (1987). Drosophila mitochondrial DNA: Conserved sequences in the A+T-rich region and supporting evidence for a secondary structure model of the small ribosomal RNA. J. Mol. Evol. 25: 116-125.
14. Coates BS, Sumerford DV, Hellmich RL, Lewis LC (2005). Partial mitochondrial genome sequences of Ostrinia nubilalis and Ostrinia furnicalis. Int. J. Biol. Sci. 1: 13-18.
15. Ehrlich PR, Ehrlich AH (1967). The phenetic relationships of the butterflies I. adult taxonomy and the nonspecificity hypothesis. Syst. Zool. 18: 374-385.
16. Fauron CMR, Wolstenholmn DR (1980). Extensive diversity among Drosophila species with respect to nucleotide sequences within the adenine+thymine-rich region of mitochondrial DNA molecules. Nucleic Acids Res. 8: 2439-2452.
17. Flook PK, Rowell CH, Gellissen G (1995). The sequence, organizationand evolution of the Locusta migratoria mitochondrial genome. J. Mol. Evol. 41: 928-941.
18. Friedrich M, Muquim N (2003). Sequence and phylogenetic analysis of the complete mitochondrial genome of the flour beetle Tribolium castanaeum. Mol. Phylogenet. Evol. 26: 502-512.
19. Guindon S, Lethiec F, Duroux P, Gascuel O (2005). PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33: W557-W559.
20. Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids. Symp. Ser. 41: 95-98.
21. Hong GY, Jiang ST, Yu M, Yang Y, Li F, Xue FS, Wei ZJ (2009). The complete mitochondrial genome of the cabbage butterfly, Artogeia melete (Lepidoptera: Pieridae). Acta Biochim. Biophys. Sin. 41: 446-455.
22. Hong MY, Lee EM, Jo YH, Park HC, Kim SR, Hwang JS, Jin BR, Kang PD, Kim K-G, Han YS, Kim I (2008). Complete nucleotide sequence and organization of the mitogenome of the silk moth Caligula boisduvalii (Lepidoptera: Saturniidae) and comparison with other lepidopteran insects. Gene, 413: 49-57.
23. Huelsenbeck JP, Ronquist F (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
24. Jiang ST, Hong GY, Yu M, Li N, Yang Y, Liu YQ, Wei ZJ (2009) Characterization of the complete mitochondrial genome of the giant silkworm moth, Eriogyna pyretorum (Lepidoptera: Saturniidae). Int. J. Biol. Sci. 5: 351-365.
25. Joo HJ, Kim, SS (2002). Butterflies in Jeju Island. Jeong Heng Sa, Seoul, Korea, p. 185.
26. Junqueria ACM, Lessinger AC, Torres TT, da Silva FR, Vettore AL, Arruda P, Espin AMLA (2004). The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae). Gene, 339: 7-15.
27. Kim YS (2005). Illustrated Book of Korean Butterflies in Color. Kyo-Hak Pub. Co., Seoul, Korea, p. 305.
28. Kim MI, Baek JY, Kim MJ, Jeong HC, Kim KG, Bae CH, Han YS, Jin BR, Kim I (2009) Complete nucleotide sequence and organization of the mitogenome of the red-spotted apollo butterfly, Parnassius bremeri (Lepidoptera: Papilionidae) and comparison with other lepidopteran insects. Mol. Cells, 28: 347-363.
29. Kim I, Lee EM, Seol KY, Yun EY, Lee YB, Hwang JS, Jin BR (2006). The mitochondrial genome of the Korean hairstreak, Coreana raphaelis (Lepidoptera: Lycaenidae). Insect Mol. Biol. 15: 217-225.
30. Kim SR, Kim MI, Hong MY, Kim KY, Kang PD, Hwang JS, Han YS, Jin BR, Kim I (2009). The complete mitogenome sequence of the Japanese oak silkmoth, Antheraea yamamai (Lepidoptera: Saturniidae). Mol. Biol. Rep. 36: 1871-1880.
31. Kristensen NP, (1976). Remarks on the family-level phylogeny of butterflies (Insecta Lepidoptera, Rhopalocera). Zeit. Zool. Syst. Evol. Forsch. 14: 25-33.
32. Lanave C, Preparata G, Saccone C, Serio G (1984). A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20: 86-93.
33. Lee ES, Shin KS, Kim MS, Park H, Cho S, Kim CB (2006). The mitochondrial genome of the smaller tea tortix Adoxophyes honmai (Lepidoptera: Tortricidae). Gene, 373: 52-57.
34. Liu Y, Li Y, Pan M, Dai F, Zhu X, Lu C, Xiang Z (2008). The complete mitochondrial genome of the Chinese oak silkmoth, Antheraea pernyi (Lepidoptera: Saturniidae). Acta. Biochim. Biophys. Sin. (Shanghai) 40: 693-703.
35. Lowe TM, Eddy SR (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
36. Minet J (1991). Tentative reconstruction of the ditrysian phylogeny (Lepidoptera: Glossata). Entomol. Scand. 22: 69-95.
37. Minet J (1994). The Bombycoidea : phylogeny and higher classification (Lepidoptera : Glossata). Entomol. Scand. 25: 63-88.
38. Moriz C, Brown WM (1987). Tandem duplication in animal mitochondrial DNAs: variation in incidence and gene content among lizards. Proc. Natl. Acad. Sci. USA, 84: 7183-7187.
39. Nardi F, Caeapelli A, Dallai R, Frati F (2003). The mitochondrial genome of the olive fly Bactrocera oleae: two haplotypes from distant geographic locations. Insect Mol. Biol. 12: 605-611.
40. Nielsen ES (1989). Phylogeny of major lepidopteran groups. In: Fernholm B, Bremer K, Jörnvall H (eds) The Hierarchy of Life. Amsterdam, Elsevier. pp. 281-294.
41. Ojala D, Montoya J, Attardi G (1981). tRNA punctuation model of RNA processing in human mitochondria. Nature 290: 470-474.
42. Perna NT, Kocher TD (1995) Patterns of nucleotide composition at four fold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41: 353-358.
43. Posada D, Crandal KA (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14: 817-818.
44. Regier JC, Cook C, Mitter C, Hussey A (2008). A phylogenetic study of the 'bombycoid complex' (Lepidoptera) using five protein-coding nuclear genes, with comments on the problem of macrolepidopteran phylogeny. Syst. Entomol. 33: 175-189.
45. Robbins RK (1988). Comparative morphology of the butterfly forleg coxa and trochanter (Lepidoptera) and its systematic implications. Proc. Entomol. Soc. Wash. 90: 133-154.
46. Saito S, Tamuea K, Aotsuka T (2005). Replicatiion origin of mitochondrial DNA in insects. Genetics, 171: 433-448.
47. Salvato P, Simonato M, Battisti A, Negrisolo E (2008). The complete mitochondrial genome of the bag-shelter moth Ochrogaster lunifer (Lepidoptera, Notodontidae). BMC Genomics, 9: p. 331.
48. Scott J (1986). On the monophyly of the Macrolepidoptera, including a reassessment of their relationship to Cossoidea and Castnioideaand a reaasignment of Mimallonidae to Pyraloidea. J. Res. Lepid. 25: 30-38.
49. Spanos L, Koutroumbas G, Kostyfakis M, Louis C (2000). The mitochondrial genome of the mediterranean fruitfly, Ceratitis capitata. Insect Mol. Biol. 9: 139-144.
50. Swofford DL (2002). PAUP*. Phylogenetic analysis using parsimony (*and other methods) ver 4.10 (Sunderland M.A.: Sinauer Associates).
51. Taanman JW (1999). The mitochondrial genome: structure, transcription, translation and replication. Biochim. Biophys. Acta 1410: 103-123.
52. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 173-216.
53. Wahlberg N, Braby MF, Brower AVZ, de Jong R, Lee MM, Nylin S, Pierce N, Sperling FA, Vila R, Warren AD, Zakharov E (2005). Synergistic effects of combining morphological and molecular data in resolving the phylogeny of butterflies and skippers. Proc. R. Soc. B. 272: 1577-1586.
54. Weller SJ, Pashely DP (1995). In search of butterfly origins. Mol. Phylogenet. Evol. 4: 235-246.
55. Wernersson R, Pedersen AG (2003). Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31: 3537-3539.
56. Wettstein W, Schmid B (1999). Conservation of arthropod diversity in montane wetlands: effect of altitude, habitat quality and habitat fragmentation on butterflies and grasshoppers. J. Appl. Ecol. 36: 363-373.
57. Wolstenholme DR (1992). Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.
58. Yang L, Wei ZJ, Hong GY, Jiang ST, Wen LP (2009). The complete nucleotide sequence of the mitochondrial genome of Phthonandria atrilineata (Lepidoptera: Geometridae). Mol. Biol. Rep. 36: 1441-1449.
59. Yukuhiro K, Sezutsu H, Itoh M, Shimizu K, Banno Y (2002). Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silk moth, Bombyx mandarinaand its close relative, the domesticated silk moth, Bombyx mori. Mol. Biol. Evol. 19: 1385-1389.