-
1
-
-
36549053175
-
A genomic view of introgression and hybrid speciation
-
Baack EJ, Rieseberg LH, (2007) A genomic view of introgression and hybrid speciation. Curr Opin Genet Dev 17: 513-518.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 513-518
-
-
Baack, E.J.1
Rieseberg, L.H.2
-
3
-
-
17844367344
-
Hybridization as an invasion of the genome
-
Mallet J, (2005) Hybridization as an invasion of the genome. Trends Ecol Evol 20: 229-237.
-
(2005)
Trends Ecol Evol
, vol.20
, pp. 229-237
-
-
Mallet, J.1
-
4
-
-
77953124338
-
Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits
-
Hayden B, Pulcini D, Kelly-Quinn M, O'Grady M, Caffrey J, et al. (2010) Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits. BMC Evol Biol 10: 169.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 169
-
-
Hayden, B.1
Pulcini, D.2
Kelly-Quinn, M.3
O'Grady, M.4
Caffrey, J.5
-
5
-
-
69449100456
-
The evolutionary origins of beneficial alleles during the repeated adaptation of garter snakes to deadly prey
-
Feldman CR, Brodie ED Jr, Brodie ED, Pfrender ME, (2009) The evolutionary origins of beneficial alleles during the repeated adaptation of garter snakes to deadly prey. Proc Natl Acad Sci U S A 106: 13415-13420.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 13415-13420
-
-
Feldman, C.R.1
Brodie Jr., E.D.2
Brodie, E.D.3
Pfrender, M.E.4
-
6
-
-
68249090481
-
The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing
-
doi:10.1371/journal.pgen.1000550
-
Kulathinal RJ, Stevison LS, Noor MA, (2009) The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing. PLoS Genet 5: e1000550 doi:10.1371/journal.pgen.1000550.
-
(2009)
PLoS Genet
, vol.5
-
-
Kulathinal, R.J.1
Stevison, L.S.2
Noor, M.A.3
-
7
-
-
21244476386
-
Hybridization in the recent past
-
Grant PR, Grant BR, Petren K, (2005) Hybridization in the recent past. Am Nat 166: 56-67.
-
(2005)
Am Nat
, vol.166
, pp. 56-67
-
-
Grant, P.R.1
Grant, B.R.2
Petren, K.3
-
8
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, et al. (2010) A draft sequence of the Neandertal genome. Science 328: 710-722.
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
-
9
-
-
33845335816
-
Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage
-
Evans PD, Mekel-Bobrov N, Vallender EJ, Hudson RR, Lahn BT, (2006) Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proc Natl Acad Sci U S A 103: 18178-18183.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18178-18183
-
-
Evans, P.D.1
Mekel-Bobrov, N.2
Vallender, E.J.3
Hudson, R.R.4
Lahn, B.T.5
-
10
-
-
0041408259
-
Genetic dissection of hybrid incompatibilities between Drosophila simulans and D. mauritiana. II. Mapping hybrid male sterility loci on the third chromosome
-
Tao Y, Zeng ZB, Li J, Hartl DL, Laurie CC, (2003) Genetic dissection of hybrid incompatibilities between Drosophila simulans and D. mauritiana. II. Mapping hybrid male sterility loci on the third chromosome. Genetics 164: 1399-1418.
-
(2003)
Genetics
, vol.164
, pp. 1399-1418
-
-
Tao, Y.1
Zeng, Z.B.2
Li, J.3
Hartl, D.L.4
Laurie, C.C.5
-
11
-
-
0030733642
-
Haldane's rule and X-chromosome size in Drosophila
-
Turelli M, Begun DJ, (1997) Haldane's rule and X-chromosome size in Drosophila. Genetics 147: 1799-1815.
-
(1997)
Genetics
, vol.147
, pp. 1799-1815
-
-
Turelli, M.1
Begun, D.J.2
-
12
-
-
34249074723
-
Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis
-
Machado CA, Haselkorn TS, Noor MA, (2007) Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis. Genetics 175: 1289-1306.
-
(2007)
Genetics
, vol.175
, pp. 1289-1306
-
-
Machado, C.A.1
Haselkorn, T.S.2
Noor, M.A.3
-
13
-
-
34249030010
-
Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris
-
Yatabe Y, Kane NC, Scotti-Saintagne C, Rieseberg LH, (2007) Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 175: 1883-1893.
-
(2007)
Genetics
, vol.175
, pp. 1883-1893
-
-
Yatabe, Y.1
Kane, N.C.2
Scotti-Saintagne, C.3
Rieseberg, L.H.4
-
14
-
-
1342288606
-
SPLATCHE: a program to simulate genetic diversity taking into account environmental heterogeneity
-
Currat M, Excoffier L, (2004) SPLATCHE: a program to simulate genetic diversity taking into account environmental heterogeneity. Molecular Ecology Notes 4: 139-142.
-
(2004)
Molecular Ecology Notes
, vol.4
, pp. 139-142
-
-
Currat, M.1
Excoffier, L.2
-
15
-
-
47749139699
-
The hidden side of invasions: massive introgression by local genes
-
Currat M, Ruedi M, Petit RJ, Excoffier L, (2008) The hidden side of invasions: massive introgression by local genes. Evolution 62: 1908-1920.
-
(2008)
Evolution
, vol.62
, pp. 1908-1920
-
-
Currat, M.1
Ruedi, M.2
Petit, R.J.3
Excoffier, L.4
-
16
-
-
76449096202
-
Genetic consequences of range expansions
-
Excoffier L, Petit RJ, (2009) Genetic consequences of range expansions. Annual Review of Ecology, Evolution, and Systematics 40: 481-501.
-
(2009)
Annual Review of Ecology, Evolution, and Systematics
, vol.40
, pp. 481-501
-
-
Excoffier, L.1
Petit, R.J.2
-
17
-
-
0002450077
-
Stages in invasion and replacement demonstrated by species of Melandrium
-
Baker HG, (1948) Stages in invasion and replacement demonstrated by species of Melandrium. The Journal of Ecology 36: 96-119.
-
(1948)
The Journal of Ecology
, vol.36
, pp. 96-119
-
-
Baker, H.G.1
-
18
-
-
0000180675
-
Race formation, speciation, and introgression within Drosophila simulans, Drosophila mauritiana, and Drosophila sechellia inferred from mitochondrial DNA analysis
-
Solignac M, Monnerot M, (1986) Race formation, speciation, and introgression within Drosophila simulans, Drosophila mauritiana, and Drosophila sechellia inferred from mitochondrial DNA analysis. Evolution 40: 531-539.
-
(1986)
Evolution
, vol.40
, pp. 531-539
-
-
Solignac, M.1
Monnerot, M.2
-
19
-
-
0032924463
-
Introgression through rare hybridization: A genetic study of a hybrid zone between red and sika deer (genus Cervus) in Argyll, Scotland
-
Goodman SJ, Barton NH, Swanson G, Abernethy K, Pemberton JM, (1999) Introgression through rare hybridization: A genetic study of a hybrid zone between red and sika deer (genus Cervus) in Argyll, Scotland. Genetics 152: 355-371.
-
(1999)
Genetics
, vol.152
, pp. 355-371
-
-
Goodman, S.J.1
Barton, N.H.2
Swanson, G.3
Abernethy, K.4
Pemberton, J.M.5
-
20
-
-
0029278792
-
Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei: Cyprinidae) in Missouri and Arkansas
-
Duvernell DD, Aspinwall N, (1995) Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei: Cyprinidae) in Missouri and Arkansas. Mol Ecol 4: 173-181.
-
(1995)
Mol Ecol
, vol.4
, pp. 173-181
-
-
Duvernell, D.D.1
Aspinwall, N.2
-
21
-
-
33846119305
-
Hybridization among cryptic species of the cellar fungus Coniophora puteana (Basidiomycota)
-
Kauserud H, Svegarden IB, Decock C, Hallenberg N, (2007) Hybridization among cryptic species of the cellar fungus Coniophora puteana (Basidiomycota). Mol Ecol 16: 389-399.
-
(2007)
Mol Ecol
, vol.16
, pp. 389-399
-
-
Kauserud, H.1
Svegarden, I.B.2
Decock, C.3
Hallenberg, N.4
-
22
-
-
0034608827
-
Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab
-
O'Donnell K, Kistler HC, Tacke BK, Casper HH, (2000) Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc Natl Acad Sci U S A 97: 7905-7910.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 7905-7910
-
-
O'Donnell, K.1
Kistler, H.C.2
Tacke, B.K.3
Casper, H.H.4
-
23
-
-
33947250760
-
Phylogenetic evidence of host-specific cryptic species in the anther smut fungus
-
Le Gac M, Hood ME, Fournier E, Giraud T, (2007) Phylogenetic evidence of host-specific cryptic species in the anther smut fungus. Evolution 61: 15-26.
-
(2007)
Evolution
, vol.61
, pp. 15-26
-
-
Le Gac, M.1
Hood, M.E.2
Fournier, E.3
Giraud, T.4
-
24
-
-
78650492295
-
Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact
-
Gladieux P, Vercken E, Fontaine MC, Hood ME, Jonot O, et al. (2011) Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact. Mol Biol Evol 28: 459-471.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 459-471
-
-
Gladieux, P.1
Vercken, E.2
Fontaine, M.C.3
Hood, M.E.4
Jonot, O.5
-
25
-
-
79959639022
-
Amplified fragment length polymorphism and sequence analyses reveal massive gene introgression from the European fungal pathogen Heterobasidion annosum into its introduced congener H. irregulare
-
Gonthier P, Garbelotto M, (2011) Amplified fragment length polymorphism and sequence analyses reveal massive gene introgression from the European fungal pathogen Heterobasidion annosum into its introduced congener H. irregulare. Mol Ecol 20: 2756-2770.
-
(2011)
Mol Ecol
, vol.20
, pp. 2756-2770
-
-
Gonthier, P.1
Garbelotto, M.2
-
26
-
-
33746576136
-
Emergence of a new disease as a result of interspecific virulence gene transfer
-
Friesen TL, Stukenbrock EH, Liu Z, Meinhardt S, Ling H, et al. (2006) Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet 38: 953-956.
-
(2006)
Nat Genet
, vol.38
, pp. 953-956
-
-
Friesen, T.L.1
Stukenbrock, E.H.2
Liu, Z.3
Meinhardt, S.4
Ling, H.5
-
27
-
-
79151477225
-
Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi
-
Slot JC, Rokas A, (2011) Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol 21: 134-139.
-
(2011)
Curr Biol
, vol.21
, pp. 134-139
-
-
Slot, J.C.1
Rokas, A.2
-
28
-
-
77956338821
-
Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora
-
Strandberg R, Nygren K, Menkis A, James TY, Wik L, et al. (2010) Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genet Biol 47: 869-878.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 869-878
-
-
Strandberg, R.1
Nygren, K.2
Menkis, A.3
James, T.Y.4
Wik, L.5
-
29
-
-
33645094669
-
Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novo-ulmi
-
Paoletti M, Buck KW, Brasier CM, (2006) Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novo-ulmi. Mol Ecol 15: 249-262.
-
(2006)
Mol Ecol
, vol.15
, pp. 249-262
-
-
Paoletti, M.1
Buck, K.W.2
Brasier, C.M.3
-
30
-
-
23844507464
-
Lateral transfer of mating system in Stemphylium
-
Inderbitzin P, Harkness J, Turgeon BG, Berbee ML, (2005) Lateral transfer of mating system in Stemphylium. Proc Natl Acad Sci U S A 102: 11390-11395.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11390-11395
-
-
Inderbitzin, P.1
Harkness, J.2
Turgeon, B.G.3
Berbee, M.L.4
-
31
-
-
77954241323
-
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
-
Neafsey DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, et al. (2010) Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Res 20: 938-946.
-
(2010)
Genome Res
, vol.20
, pp. 938-946
-
-
Neafsey, D.E.1
Barker, B.M.2
Sharpton, T.J.3
Stajich, J.E.4
Park, D.J.5
-
32
-
-
77949467943
-
Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus
-
Mallet LV, Becq J, Deschavanne P, (2010) Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus. BMC Genomics 11: 171.
-
(2010)
BMC Genomics
, vol.11
, pp. 171
-
-
Mallet, L.V.1
Becq, J.2
Deschavanne, P.3
-
33
-
-
79952609214
-
Population genomics and local adaptation in wild isolates of a model microbial eukaryote
-
Ellison CE, Hall C, Kowbel D, Welch J, Brem RB, et al. (2011) Population genomics and local adaptation in wild isolates of a model microbial eukaryote. Proc Natl Acad Sci U S A 108: 2831-2836.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 2831-2836
-
-
Ellison, C.E.1
Hall, C.2
Kowbel, D.3
Welch, J.4
Brem, R.B.5
-
34
-
-
77953754620
-
Yeast evolutionary genomics
-
Dujon B, (2010) Yeast evolutionary genomics. Nat Rev Genet 11: 512-524.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 512-524
-
-
Dujon, B.1
-
35
-
-
41949136199
-
The mating-type chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes
-
doi:10.1371/journal.pgen.1000030
-
Menkis A, Jacobson DJ, Gustafsson T, Johannesson H, (2008) The mating-type chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes. PLoS Genet 4: e1000030 doi:10.1371/journal.pgen.1000030.
-
(2008)
PLoS Genet
, vol.4
-
-
Menkis, A.1
Jacobson, D.J.2
Gustafsson, T.3
Johannesson, H.4
-
36
-
-
79955471591
-
A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi
-
Nygren K, Strandberg R, Wallberg A, Nabholz B, Gustafsson T, et al. (2011) A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi. Mol Phylogenet Evol 59: 649-663.
-
(2011)
Mol Phylogenet Evol
, vol.59
, pp. 649-663
-
-
Nygren, K.1
Strandberg, R.2
Wallberg, A.3
Nabholz, B.4
Gustafsson, T.5
-
37
-
-
0029943667
-
Pseudohomothallism and evolution of the mating-type chromosome in Neurospora tetrasperma
-
Merino ST, Nelson MA, Jacobson DJ, Natvig DO, (1996) Pseudohomothallism and evolution of the mating-type chromosome in Neurospora tetrasperma. Genetics 143: 789-799.
-
(1996)
Genetics
, vol.143
, pp. 789-799
-
-
Merino, S.T.1
Nelson, M.A.2
Jacobson, D.J.3
Natvig, D.O.4
-
38
-
-
69249184408
-
Phylogenetic and biological species diversity within the Neurospora tetrasperma complex
-
Menkis A, Bastiaans E, Jacobson DJ, Johannesson H, (2009) Phylogenetic and biological species diversity within the Neurospora tetrasperma complex. J Evol Biol 22: 1923-1936.
-
(2009)
J Evol Biol
, vol.22
, pp. 1923-1936
-
-
Menkis, A.1
Bastiaans, E.2
Jacobson, D.J.3
Johannesson, H.4
-
40
-
-
0344863884
-
A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora
-
Dettman JR, Jacobson DJ, Taylor JW, (2003) A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57: 2703-2720.
-
(2003)
Evolution
, vol.57
, pp. 2703-2720
-
-
Dettman, J.R.1
Jacobson, D.J.2
Taylor, J.W.3
-
41
-
-
0000541158
-
Strains of Neurospora collected from nature
-
Perkins DD, Turner BC, (1976) Strains of Neurospora collected from nature. Evolution 30: 281-313.
-
(1976)
Evolution
, vol.30
, pp. 281-313
-
-
Perkins, D.D.1
Turner, B.C.2
-
42
-
-
0031080347
-
Phylogenetic analysis of heterothallic Neurospora species
-
Skupski MP, Natvig DO, (1997) Phylogenetic analysis of heterothallic Neurospora species. Fungal Genetics and Biology 21: 153-162.
-
(1997)
Fungal Genetics and Biology
, vol.21
, pp. 153-162
-
-
Skupski, M.P.1
Natvig, D.O.2
-
43
-
-
0033965279
-
Suppressed recombination and a pairing anomaly on the mating-type chromosome of Neurospora tetrasperma
-
Gallegos A, Jacobson DJ, Raju NB, Skupski MP, Natvig DO, (2000) Suppressed recombination and a pairing anomaly on the mating-type chromosome of Neurospora tetrasperma. Genetics 154: 623-633.
-
(2000)
Genetics
, vol.154
, pp. 623-633
-
-
Gallegos, A.1
Jacobson, D.J.2
Raju, N.B.3
Skupski, M.P.4
Natvig, D.O.5
-
44
-
-
27444431721
-
Blocked recombination along the mating-type chromosomes of Neurospora tetrasperma involves both structural heterozygosity and autosomal genes
-
Jacobson DJ, (2005) Blocked recombination along the mating-type chromosomes of Neurospora tetrasperma involves both structural heterozygosity and autosomal genes. Genetics 171: 839-843.
-
(2005)
Genetics
, vol.171
, pp. 839-843
-
-
Jacobson, D.J.1
-
45
-
-
20044382804
-
A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants
-
doi:10.1371/journal.pbio.0030004
-
Nicolas M, Marais G, Hykelova V, Janousek B, Laporte V, et al. (2005) A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants. PLoS Biol 3: e4 doi:10.1371/journal.pbio.0030004.
-
(2005)
PLoS Biol
, vol.3
-
-
Nicolas, M.1
Marais, G.2
Hykelova, V.3
Janousek, B.4
Laporte, V.5
-
46
-
-
9144264159
-
A primitive Y chromosome in papaya marks incipient sex chromosome evolution
-
Liu Z, Moore PH, Ma H, Ackerman CM, Ragiba M, et al. (2004) A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature 427: 348-352.
-
(2004)
Nature
, vol.427
, pp. 348-352
-
-
Liu, Z.1
Moore, P.H.2
Ma, H.3
Ackerman, C.M.4
Ragiba, M.5
-
47
-
-
4344561299
-
The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome
-
Peichel CL, Ross JA, Matson CK, Dickson M, Grimwood J, et al. (2004) The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome. Curr Biol 14: 1416-1424.
-
(2004)
Curr Biol
, vol.14
, pp. 1416-1424
-
-
Peichel, C.L.1
Ross, J.A.2
Matson, C.K.3
Dickson, M.4
Grimwood, J.5
-
48
-
-
33745611378
-
Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka
-
Kondo M, Hornung U, Nanda I, Imai S, Sasaki T, et al. (2006) Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka. Genome Res 16: 815-826.
-
(2006)
Genome Res
, vol.16
, pp. 815-826
-
-
Kondo, M.1
Hornung, U.2
Nanda, I.3
Imai, S.4
Sasaki, T.5
-
49
-
-
80052661967
-
Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma
-
Ellison CE, Stajich JE, Jacobson DJ, Natvig DO, Lapidus A, et al. (2011) Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics 189: 55-69.
-
(2011)
Genetics
, vol.189
, pp. 55-69
-
-
Ellison, C.E.1
Stajich, J.E.2
Jacobson, D.J.3
Natvig, D.O.4
Lapidus, A.5
-
50
-
-
80053053491
-
Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma
-
Whittle CA, Johannesson H, (2011) Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma. Heredity 107: 305-314.
-
(2011)
Heredity
, vol.107
, pp. 305-314
-
-
Whittle, C.A.1
Johannesson, H.2
-
51
-
-
79955445401
-
Degeneration in codon usage within the young segment of suppressed recombination in the mating type chromosomes of Neurospora tetrasperma
-
Whittle CA, Sun Y, Johannesson H, (2011) Degeneration in codon usage within the young segment of suppressed recombination in the mating type chromosomes of Neurospora tetrasperma. Eukaryot Cell 10: 594-603.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 594-603
-
-
Whittle, C.A.1
Sun, Y.2
Johannesson, H.3
-
52
-
-
11844260659
-
Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y
-
Carvalho AB, Clark AG, (2005) Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y. Science 307: 108-110.
-
(2005)
Science
, vol.307
, pp. 108-110
-
-
Carvalho, A.B.1
Clark, A.G.2
-
53
-
-
25844504316
-
Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila
-
Bachtrog D, (2005) Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila. Genome Res 15: 1393-1401.
-
(2005)
Genome Res
, vol.15
, pp. 1393-1401
-
-
Bachtrog, D.1
-
54
-
-
0025906872
-
The evolution of sex chromosomes
-
Charlesworth B, (1991) The evolution of sex chromosomes. Science 251: 1030-1033.
-
(1991)
Science
, vol.251
, pp. 1030-1033
-
-
Charlesworth, B.1
-
55
-
-
0001366798
-
Sexual dysfunction associated with outcrossing in Neurospora tetrasperma, a pseudohomothallic ascomycete
-
Jacobson DJ, (1995) Sexual dysfunction associated with outcrossing in Neurospora tetrasperma, a pseudohomothallic ascomycete. Mycologia 87: 604-617.
-
(1995)
Mycologia
, vol.87
, pp. 604-617
-
-
Jacobson, D.J.1
-
56
-
-
0000160734
-
Life histories and heterothallism of the red bread-mold fungi of the Monilia sitophila group
-
Shear CL, Dodge BO, (1927) Life histories and heterothallism of the red bread-mold fungi of the Monilia sitophila group. J Agric Res 34: 1019-1042.
-
(1927)
J Agric Res
, vol.34
, pp. 1019-1042
-
-
Shear, C.L.1
Dodge, B.O.2
-
57
-
-
0023528999
-
Random-fragment hybridization analysis of evolution in the genus Neurospora: the status of four-spored strains
-
Natvig DO, Jackson DA, Taylor JT, (1987) Random-fragment hybridization analysis of evolution in the genus Neurospora: the status of four-spored strains. Evolution 41: 1003-1021.
-
(1987)
Evolution
, vol.41
, pp. 1003-1021
-
-
Natvig, D.O.1
Jackson, D.A.2
Taylor, J.T.3
-
58
-
-
0000344187
-
Mitochondrial DNA and evolution of heterothallic and pseudohomothallic Neurospora species
-
Taylor JT, Natvig DO, (1989) Mitochondrial DNA and evolution of heterothallic and pseudohomothallic Neurospora species. Mycological research 3: 257-272.
-
(1989)
Mycological Research
, vol.3
, pp. 257-272
-
-
Taylor, J.T.1
Natvig, D.O.2
-
59
-
-
0028355442
-
Diverse programs of ascus development in pseudohomothallic species of Neurospora, Gelasinospora, and Podospora
-
Raju NB, (1994) Diverse programs of ascus development in pseudohomothallic species of Neurospora, Gelasinospora, and Podospora. Developmental Genetics 15: 104-118.
-
(1994)
Developmental Genetics
, vol.15
, pp. 104-118
-
-
Raju, N.B.1
-
60
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859-868.
-
(2003)
Nature
, vol.422
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
-
61
-
-
0031167265
-
Mapping chromosome landmarks in the centromere I region of Neurospora crassa
-
Rosa AL, Haedo SD, Temporini ED, Borioli GA, Mautino MR, (1997) Mapping chromosome landmarks in the centromere I region of Neurospora crassa. Fungal Genet Biol 21: 315-322.
-
(1997)
Fungal Genet Biol
, vol.21
, pp. 315-322
-
-
Rosa, A.L.1
Haedo, S.D.2
Temporini, E.D.3
Borioli, G.A.4
Mautino, M.R.5
-
62
-
-
0031839901
-
Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats
-
Cambareri EB, Aisner R, Carbon J, (1998) Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats. Mol Cell Biol 18: 5465-5477.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 5465-5477
-
-
Cambareri, E.B.1
Aisner, R.2
Carbon, J.3
-
63
-
-
77955082187
-
Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma
-
Menkis A, Whittle CA, Johannesson H, (2010) Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma. BMC Evol Biol 10: 234.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 234
-
-
Menkis, A.1
Whittle, C.A.2
Johannesson, H.3
-
64
-
-
78149256307
-
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
-
Larget BR, Kotha SK, Dewey CN, Ane C, (2010) BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics 26: 2910-2911.
-
(2010)
Bioinformatics
, vol.26
, pp. 2910-2911
-
-
Larget, B.R.1
Kotha, S.K.2
Dewey, C.N.3
Ane, C.4
-
65
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ane C, Larget B, Baum DA, Smith SD, Rokas A, (2007) Bayesian estimation of concordance among gene trees. Mol Biol Evol 24: 412-426.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 412-426
-
-
Ane, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
66
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
67
-
-
67449158076
-
Gene trees reveal repeated instances of mitochondrial DNA introgression in orangethroat darters (percidae: etheostoma)
-
Bossu CM, Near TJ, (2009) Gene trees reveal repeated instances of mitochondrial DNA introgression in orangethroat darters (percidae: etheostoma). Syst Biol 58: 114-129.
-
(2009)
Syst Biol
, vol.58
, pp. 114-129
-
-
Bossu, C.M.1
Near, T.J.2
-
68
-
-
34948902221
-
Nuclear gene sequences resolve species phylogeny and mitochondrial introgression in Leptocarabus beetles showing trans-species polymorphisms
-
Zhang AB, Sota T, (2007) Nuclear gene sequences resolve species phylogeny and mitochondrial introgression in Leptocarabus beetles showing trans-species polymorphisms. Mol Phylogenet Evol 45: 534-546.
-
(2007)
Mol Phylogenet Evol
, vol.45
, pp. 534-546
-
-
Zhang, A.B.1
Sota, T.2
-
69
-
-
79955439952
-
Reconstructing concordance trees and testing the coalescent model from genomewide data sets
-
In: Knowles LLKL, editors, Estimating species trees: Practical and theoretical aspects: Wiley-Blackwell
-
Ané C, (2010) Reconstructing concordance trees and testing the coalescent model from genomewide data sets. In: Knowles LLKL, editors. pp. 35-52 Estimating species trees: Practical and theoretical aspects: Wiley-Blackwell.
-
(2010)
, pp. 35-52
-
-
Ané, C.1
-
70
-
-
33846839295
-
Concordance trees, concordance factors, and the exploration of reticulate genealogy
-
Baum DA, (2007) Concordance trees, concordance factors, and the exploration of reticulate genealogy. Taxon 56: 417-426.
-
(2007)
Taxon
, vol.56
, pp. 417-426
-
-
Baum, D.A.1
-
71
-
-
78149383270
-
Divergence with gene flow: models and data
-
Pinho C, Hey J, (2010) Divergence with gene flow: models and data. Annual Review of Ecology, Evolution, and Systematics Vol 41 41: 215-230.
-
(2010)
Annual Review of Ecology, Evolution, and Systematics
, vol.41
, pp. 215-230
-
-
Pinho, C.1
Hey, J.2
-
72
-
-
84966152732
-
Gene flow past a cline
-
Barton N, (1979) Gene flow past a cline. Heredity 43: 333-339.
-
(1979)
Heredity
, vol.43
, pp. 333-339
-
-
Barton, N.1
-
73
-
-
58149337605
-
The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata
-
Nam K, Ellegren H, (2008) The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata. Genetics 180: 1131-1136.
-
(2008)
Genetics
, vol.180
, pp. 1131-1136
-
-
Nam, K.1
Ellegren, H.2
-
74
-
-
0033615708
-
Four evolutionary strata on the human X chromosome
-
Lahn BT, Page DC, (1999) Four evolutionary strata on the human X chromosome. Science 286: 964-967.
-
(1999)
Science
, vol.286
, pp. 964-967
-
-
Lahn, B.T.1
Page, D.C.2
-
75
-
-
0035989036
-
Patterns of postzygotic isolation in Lepidoptera
-
Presgraves DC, (2002) Patterns of postzygotic isolation in Lepidoptera. Evolution 56: 1168-1183.
-
(2002)
Evolution
, vol.56
, pp. 1168-1183
-
-
Presgraves, D.C.1
-
76
-
-
0036808691
-
The evolution of F1 postzygotic incompatibilities in birds
-
Price TD, Bouvier MM, (2002) The evolution of F1 postzygotic incompatibilities in birds. Evolution 56: 2083-2089.
-
(2002)
Evolution
, vol.56
, pp. 2083-2089
-
-
Price, T.D.1
Bouvier, M.M.2
-
77
-
-
0026575219
-
Genetics and speciation
-
Coyne JA, (1992) Genetics and speciation. Nature 355: 511-515.
-
(1992)
Nature
, vol.355
, pp. 511-515
-
-
Coyne, J.A.1
-
78
-
-
80052337297
-
Genetic architecture of a reinforced, postmating, reproductive isolation barrier between Neurospora species indicates evolution via natural selection
-
doi:10.1371/journal.pgen.1002204
-
Turner E, Jacobson DJ, Taylor JW, (2011) Genetic architecture of a reinforced, postmating, reproductive isolation barrier between Neurospora species indicates evolution via natural selection. PLoS Genet 7: e1002204 doi:10.1371/journal.pgen.1002204.
-
(2011)
PLoS Genet
, vol.7
-
-
Turner, E.1
Jacobson, D.J.2
Taylor, J.W.3
-
79
-
-
22144463157
-
Nuclear behavior in fungal hyphae
-
Maheshwari R, (2005) Nuclear behavior in fungal hyphae. FEMS Microbiol Lett 249: 7-14.
-
(2005)
FEMS Microbiol Lett
, vol.249
, pp. 7-14
-
-
Maheshwari, R.1
-
80
-
-
80053307852
-
Nuclear and genome dynamics in multinucleate ascomycete fungi
-
Roper M, Ellison C, Taylor JW, Glass NL, (2011) Nuclear and genome dynamics in multinucleate ascomycete fungi. Curr Biol 21: R786-793.
-
(2011)
Curr Biol
, vol.21
-
-
Roper, M.1
Ellison, C.2
Taylor, J.W.3
Glass, N.L.4
-
81
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
Hill WG, Robertson A, (1966) The effect of linkage on limits to artificial selection. Genet Res 8: 269-294.
-
(1966)
Genet Res
, vol.8
, pp. 269-294
-
-
Hill, W.G.1
Robertson, A.2
-
82
-
-
0035806958
-
Genetic linkage and molecular evolution
-
Gordo I, Charlesworth B, (2001) Genetic linkage and molecular evolution. Curr Biol 11: R684-686.
-
(2001)
Curr Biol
, vol.11
-
-
Gordo, I.1
Charlesworth, B.2
-
83
-
-
0029152115
-
Species-specific and mating type-specific DNA regions adjacent to mating type idiomorphs in the genus Neurospora
-
Randall TA, Metzenberg RL, (1995) Species-specific and mating type-specific DNA regions adjacent to mating type idiomorphs in the genus Neurospora. Genetics 141: 119-136.
-
(1995)
Genetics
, vol.141
, pp. 119-136
-
-
Randall, T.A.1
Metzenberg, R.L.2
-
84
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB, (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
85
-
-
0033594243
-
Molecular identification of wood-inhabiting fungi from a primeval forest in Sweden
-
Johannesson H, Stenlid J, (1999) Molecular identification of wood-inhabiting fungi from a primeval forest in Sweden. Forest Ecol Managm 115: 203-211.
-
(1999)
Forest Ecol Managm
, vol.115
, pp. 203-211
-
-
Johannesson, H.1
Stenlid, J.2
-
86
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
88
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
89
-
-
45849154165
-
jModelTest: phylogenetic model averaging
-
Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
90
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
91
-
-
42549158349
-
The evolutionary trajectory of the mating-type (mat) genes in Neurospora relates to reproductive behavior of taxa
-
Wik L, Karlsson M, Johannesson H, (2008) The evolutionary trajectory of the mating-type (mat) genes in Neurospora relates to reproductive behavior of taxa. BMC Evol Biol 8: 109.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 109
-
-
Wik, L.1
Karlsson, M.2
Johannesson, H.3
-
92
-
-
69249175517
-
Three new phylogenetic and biological Neurospora species: N. hispaniola, N. metzenbergii and N. perkinsii
-
Villalta CF, Jacobson DJ, Taylor JW, (2009) Three new phylogenetic and biological Neurospora species: N. hispaniola, N. metzenbergii and N. perkinsii. Mycologia 101: 777-789.
-
(2009)
Mycologia
, vol.101
, pp. 777-789
-
-
Villalta, C.F.1
Jacobson, D.J.2
Taylor, J.W.3
-
93
-
-
33750387249
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. [Ph.D. dissertation]
-
Zwickl D, (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. [Ph.D. dissertation]. [PhD dissertation] The University of Texas Austin.
-
(2006)
[PhD Dissertation] The University of Texas Austin
-
-
Zwickl, D.1
-
94
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
95
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
96
-
-
77955300661
-
TRACER V1.5
-
Available from
-
Rambaut A, Drummond A, TRACER V1.5. Available fromhttp://beastbioedacuk/Tracer.
-
-
-
Rambaut, A.1
Drummond, A.2
-
97
-
-
39149141072
-
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander JA, Wilgenbusch JC, Warren DL, Swofford DL, (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
-
(2008)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
|