-
1
-
-
2942526369
-
Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey
-
AXELSSON, E., N. G. SMITH, H. SUNDSTRÖM, S. BERLIN and H. ELLEGREN, 2004 Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey. Mol. Biol. Evol. 21: 1538-1547.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 1538-1547
-
-
AXELSSON, E.1
SMITH, N.G.2
SUNDSTRÖM, H.3
BERLIN, S.4
ELLEGREN, H.5
-
2
-
-
24744446039
-
Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome
-
BACKSTRÖM, N., H. CEPLITIS, S. BERLIN and H. ELLEGREN, 2005 Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome. Mol. Biol. Evol. 22: 1992-1999.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1992-1999
-
-
BACKSTRÖM, N.1
CEPLITIS, H.2
BERLIN, S.3
ELLEGREN, H.4
-
3
-
-
33748917745
-
Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): Conserved synteny but gene order rearrangements on the avian Z chromosome
-
BACKSTRÖM, N., M. BRANDSTRÖM, L. GUSTAFSSON, A. QVARNSTRÖM, H. CHENG et al., 2006 Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian Z chromosome. Genetics 174: 377-386.
-
(2006)
Genetics
, vol.174
, pp. 377-386
-
-
BACKSTRÖM, N.1
BRANDSTRÖM, M.2
GUSTAFSSON, L.3
QVARNSTRÖM, A.4
CHENG, H.5
-
4
-
-
0037653851
-
Life history and the male mutation bias
-
BARTOSCH-HÄRLID, A., S. BERLIN, N.G.C. SMITH, A.P. MøLLER and H. ELLEGREN, 2003 Life history and the male mutation bias. Evolution 57: 2398-2406.
-
(2003)
Evolution
, vol.57
, pp. 2398-2406
-
-
BARTOSCH-HÄRLID, A.1
BERLIN, S.2
SMITH, N.G.C.3
MøLLER, A.P.4
ELLEGREN, H.5
-
5
-
-
34248998839
-
Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: Evidence from new sex-linked genes
-
BERGERO, R., A. FORREST, E. KAMAU and D. CHARLESWORTH, 2007 Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: Evidence from new sex-linked genes. Genetics 175: 1945-1954.
-
(2007)
Genetics
, vol.175
, pp. 1945-1954
-
-
BERGERO, R.1
FORREST, A.2
KAMAU, E.3
CHARLESWORTH, D.4
-
6
-
-
33748105235
-
Substitution rate heterogeneity and the male mutation bias
-
BERLIN, S., M. BRANDSTRÖM, N. BACKSTRÖ M, E. AXELSSON, N.G. SMITH et al., 2006 Substitution rate heterogeneity and the male mutation bias. J. Mol. Evol. 62: 226-233.
-
(2006)
J. Mol. Evol
, vol.62
, pp. 226-233
-
-
BERLIN, S.1
BRANDSTRÖM, M.2
BACKSTRÖ M, N.3
AXELSSON, E.4
SMITH, N.G.5
-
7
-
-
1542286769
-
Adaptive molecular evolution in HINTW, a female-specific gene in birds
-
CEPLITIS, H., and H. ELLEGREN, 2004 Adaptive molecular evolution in HINTW, a female-specific gene in birds. Mol. Biol. Evol. 21: 249-254.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 249-254
-
-
CEPLITIS, H.1
ELLEGREN, H.2
-
9
-
-
23644455954
-
Steps in the evolution of heteromorphic sex chromosomes
-
CHARLESWORTH, D., B. CHARLESWORTH and G. MARAIS, 2005 Steps in the evolution of heteromorphic sex chromosomes. Heredity 95: 118-128.
-
(2005)
Heredity
, vol.95
, pp. 118-128
-
-
CHARLESWORTH, D.1
CHARLESWORTH, B.2
MARAIS, G.3
-
10
-
-
12744280741
-
Definitive fossil evidence for the extant avian radiation in the Cretaceous
-
CLARKE, J. A., C. P. TAMBUSSI, J. I. NORIEGA, G.M. ERICKSON and R. A. KETCHAM, 2005 Definitive fossil evidence for the extant avian radiation in the Cretaceous. Nature 433: 305-308.
-
(2005)
Nature
, vol.433
, pp. 305-308
-
-
CLARKE, J.A.1
TAMBUSSI, C.P.2
NORIEGA, J.I.3
ERICKSON, G.M.4
KETCHAM, R.A.5
-
11
-
-
0030621127
-
Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
-
COOPER, A., and D. PENNY, 1997 Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence. Science 275: 1109-1113.
-
(1997)
Science
, vol.275
, pp. 1109-1113
-
-
COOPER, A.1
PENNY, D.2
-
12
-
-
0035819804
-
Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event
-
CRACRAFT, J., 2001 Avian evolution, Gondwana biogeography and the Cretaceous-Tertiary mass extinction event. Proc. R. Soc. Lond. B Biol. Sci. 268: 459-469.
-
(2001)
Proc. R. Soc. Lond. B Biol. Sci
, vol.268
, pp. 459-469
-
-
CRACRAFT, J.1
-
13
-
-
0036038208
-
Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes
-
DIMCHEFF, D.E., S. V. DROVETSKI and D. P. MINDELL, 2002 Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol. Phylogenet. Evol. 24: 203-215.
-
(2002)
Mol. Phylogenet. Evol
, vol.24
, pp. 203-215
-
-
DIMCHEFF, D.E.1
DROVETSKI, S.V.2
MINDELL, D.P.3
-
14
-
-
0034193985
-
Evolution of the avian sex chromosomes and their role in sex determination
-
ELLEGREN, H., 2000 Evolution of the avian sex chromosomes and their role in sex determination. Trends Ecol. Evol. 15: 188-192.
-
(2000)
Trends Ecol. Evol
, vol.15
, pp. 188-192
-
-
ELLEGREN, H.1
-
15
-
-
39049187468
-
Characteristics, causes and evolutionary consequences of male-biased mutation
-
ELLEGREN, H., 2007 Characteristics, causes and evolutionary consequences of male-biased mutation. Proc. R. Soc. Lond. B Biol. Sci. 274: 1-10.
-
(2007)
Proc. R. Soc. Lond. B Biol. Sci
, vol.274
, pp. 1-10
-
-
ELLEGREN, H.1
-
16
-
-
0035018377
-
Multiple and independent cessation of recombination between avian sex chromosomes
-
ELLEGREN, H., and A. CARMICHAEL, 2001 Multiple and independent cessation of recombination between avian sex chromosomes. Genetics 158: 325-331.
-
(2001)
Genetics
, vol.158
, pp. 325-331
-
-
ELLEGREN, H.1
CARMICHAEL, A.2
-
17
-
-
36849094065
-
Faced with unequality: Chicken does not have a general dosage compensation of sex-linked genes
-
ELLEGREN, H., L. HULTIN-ROSENBERG, B. BRUNSTRÖM, L. DENCKER, K. KULTIMA et al., 2007 Faced with unequality: chicken does not have a general dosage compensation of sex-linked genes. BMC Biol. 5: 40.
-
(2007)
BMC Biol
, vol.5
, pp. 40
-
-
ELLEGREN, H.1
HULTIN-ROSENBERG, L.2
BRUNSTRÖM, B.3
DENCKER, L.4
KULTIMA, K.5
-
18
-
-
22144479069
-
Evolutionary history of Silene latifola sex chromosomes revealed by genetic mapping of four genes
-
FILATOV, D. A., 2005 Evolutionary history of Silene latifola sex chromosomes revealed by genetic mapping of four genes. Genetics 170: 975-979.
-
(2005)
Genetics
, vol.170
, pp. 975-979
-
-
FILATOV, D.A.1
-
19
-
-
0037303814
-
Gene conversion drives GC content evolution in mammalian histones
-
GALTIER, N., 2003 Gene conversion drives GC content evolution in mammalian histones. Trends Genet. 19: 65-68.
-
(2003)
Trends Genet
, vol.19
, pp. 65-68
-
-
GALTIER, N.1
-
20
-
-
0033635879
-
Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): A case study using avian CHD
-
GARCÍA-MORENO, J., and D. P. MINDELL, 2000 Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs): a case study using avian CHD. Mol. Biol. Evol. 17: 1826-1832.
-
(2000)
Mol. Biol. Evol
, vol.17
, pp. 1826-1832
-
-
GARCÍA-MORENO, J.1
MINDELL, D.P.2
-
21
-
-
34248231212
-
The evolution of the avian genome as revealed by comparative molecular cytogenetics
-
GRIFFIN, D. K., L. B. ROBERTSON, H. G. TEMPEST and B. M. SKINNER, 2007 The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet. Genome Res. 117: 64-77.
-
(2007)
Cytogenet. Genome Res
, vol.117
, pp. 64-77
-
-
GRIFFIN, D.K.1
ROBERTSON, L.B.2
TEMPEST, H.G.3
SKINNER, B.M.4
-
22
-
-
0036846746
-
The origin and evolution of model organisms
-
HEDGES, S. B., 2002 The origin and evolution of model organisms. Nat. Rev. Genet. 3: 838-849.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 838-849
-
-
HEDGES, S.B.1
-
23
-
-
0033782904
-
Wpkci, encoding an altered from of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: Implication of its role in female sex determination
-
HORI, T., S. ASAKAWA, Y. ITOH, N. SHIMIZU and S. MIZUNO, 2000 Wpkci, encoding an altered from of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: implication of its role in female sex determination. Mol. Biol. Cell 11: 3645-3660.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 3645-3660
-
-
HORI, T.1
ASAKAWA, S.2
ITOH, Y.3
SHIMIZU, N.4
MIZUNO, S.5
-
24
-
-
0031736552
-
Sex biases in the mutation rate
-
HURST, L. D., and H. ELLEGREN, 1998 Sex biases in the mutation rate. Trends Genet. 14: 446-452.
-
(1998)
Trends Genet
, vol.14
, pp. 446-452
-
-
HURST, L.D.1
ELLEGREN, H.2
-
25
-
-
33947686952
-
Sequencing and comparative analysis of the chicken genome
-
INTERNATIONAL CHICKEN GENOME SEQUENCING CONSORTIUM
-
INTERNATIONAL CHICKEN GENOME SEQUENCING CONSORTIUM, 2004 Sequencing and comparative analysis of the chicken genome. Nature 432: 695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
26
-
-
33846443160
-
Comparison of the chicken and zebra finch Z chromosomes shows evolutionary rearrangements
-
ITOH, Y., K. KAMPF and A. P. ARNOLD, 2006 Comparison of the chicken and zebra finch Z chromosomes shows evolutionary rearrangements. Chromosome Res. 14: 805-815.
-
(2006)
Chromosome Res
, vol.14
, pp. 805-815
-
-
ITOH, Y.1
KAMPF, K.2
ARNOLD, A.P.3
-
27
-
-
0038561163
-
The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species
-
IWASE, M., Y. SATTA, Y.HIRAI, H. HIRAI, H. IMAI et al., 2003 The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species. Proc. Natl. Acad. Sci. USA 100: 5258-5263.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5258-5263
-
-
IWASE, M.1
SATTA, Y.2
HIRAI, Y.3
HIRAI, H.4
IMAI, H.5
-
28
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
KUMAR, S., and S. B. HEDGES, 1998 A molecular timescale for vertebrate evolution. Nature 392: 917-920.
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
KUMAR, S.1
HEDGES, S.B.2
-
29
-
-
0033615708
-
Four evolutionary strata on the human X chromosome
-
LAHN, B. T., and D. C. PAGE, 1999 Four evolutionary strata on the human X chromosome. Science 286: 964-967.
-
(1999)
Science
, vol.286
, pp. 964-967
-
-
LAHN, B.T.1
PAGE, D.C.2
-
30
-
-
2942566094
-
Evolutionary strata on the chicken Z chromosome: Implications to sex chromosome evolution
-
LAWSON HANDLEY, L. J., H. CEPLITIS and H. ELLEGREN, 2004 Evolutionary strata on the chicken Z chromosome: implications to sex chromosome evolution. Genetics 167: 367-376.
-
(2004)
Genetics
, vol.167
, pp. 367-376
-
-
LAWSON HANDLEY, L.J.1
CEPLITIS, H.2
ELLEGREN, H.3
-
32
-
-
0041423668
-
Sex chromosomes: How X-Y recombination stops
-
MARAIS, G., and N. GALTIER, 2003 Sex chromosomes: how X-Y recombination stops. Curr. Biol. 13: R641-R643.
-
(2003)
Curr. Biol
, vol.13
-
-
MARAIS, G.1
GALTIER, N.2
-
33
-
-
2442651458
-
Recombination drives the evolution of GC-content in the human genome
-
MEUNIER, J., and L. DURET, 2004 Recombination drives the evolution of GC-content in the human genome. Mol. Biol. Evol. 21: 984-990.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 984-990
-
-
MEUNIER, J.1
DURET, L.2
-
34
-
-
20044382804
-
A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants
-
NICOLAS, M., G. MARAIS, V. HYKELOVA, B. JANOUSEK, V. LAPORTE et al., 2005 A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants. PLoS Biol. 3: 47-56.
-
(2005)
PLoS Biol
, vol.3
, pp. 47-56
-
-
NICOLAS, M.1
MARAIS, G.2
HYKELOVA, V.3
JANOUSEK, B.4
LAPORTE, V.5
-
35
-
-
34548699933
-
The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds
-
NISHIDA-UMEHARA, C., Y. TSUDA, J. ISHIJIMA, J. ANDO, A. FUJIWARA et al., 2007 The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds. Chromosome Res. 15: 721-734.
-
(2007)
Chromosome Res
, vol.15
, pp. 721-734
-
-
NISHIDA-UMEHARA, C.1
TSUDA, Y.2
ISHIJIMA, J.3
ANDO, J.4
FUJIWARA, A.5
-
36
-
-
12944312756
-
Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia)
-
PECON-SLATTERY, J., L. SANNER-WACHTER and S. O'BRIEN, 2000 Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia). Proc. Natl. Acad. Sci. USA 97: 5307-5312.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5307-5312
-
-
PECON-SLATTERY, J.1
SANNER-WACHTER, L.2
O'BRIEN, S.3
-
37
-
-
43249118306
-
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
-
POTRZEBOWSKI, L., N. VINCKENBOSCH, A. C. MARQUES, F. CHALMEL, B. JÉGOU et al., 2007 Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PloS Biol. 6: e80.
-
(2007)
PloS Biol
, vol.6
-
-
POTRZEBOWSKI, L.1
VINCKENBOSCH, N.2
MARQUES, A.C.3
CHALMEL, F.4
JÉGOU, B.5
-
38
-
-
15244363491
-
The DNA sequence of the human X chromosome
-
ROSS, M. T., D. V. GRAFHAM, A. J. COFFEY, S. SCHERER, K. MCLAY et al., 2005 The DNA sequence of the human X chromosome. Nature 434: 325-337.
-
(2005)
Nature
, vol.434
, pp. 325-337
-
-
ROSS, M.T.1
GRAFHAM, D.V.2
COFFEY, A.J.3
SCHERER, S.4
MCLAY, K.5
-
39
-
-
1242274433
-
Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome
-
SANDSTEDT, S. A., and P. K. TUCKER, 2004 Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome. Genome Res. 14: 267-272.
-
(2004)
Genome Res
, vol.14
, pp. 267-272
-
-
SANDSTEDT, S.A.1
TUCKER, P.K.2
-
40
-
-
0343320348
-
Comparative painting reveals strong chromosome homology over 80 million years of bird evolution
-
SHETTY, S., D. K. GRIFFIN and J. A. GRAVES, 1999 Comparative painting reveals strong chromosome homology over 80 million years of bird evolution. Chromosome Res. 7: 289-295.
-
(1999)
Chromosome Res
, vol.7
, pp. 289-295
-
-
SHETTY, S.1
GRIFFIN, D.K.2
GRAVES, J.A.3
-
41
-
-
1842757844
-
Karyotypic evolution in the Galliformes: An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny
-
SHIBUSAWA, M., M. NISHIBORI, C. NISHIDA- UMEHARA, M. TSUDZUKI, J. MASABANDA et al., 2004a Karyotypic evolution in the Galliformes: an examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny. Cytogenet. Genome Res. 106: 111-119.
-
(2004)
Cytogenet. Genome Res
, vol.106
, pp. 111-119
-
-
SHIBUSAWA, M.1
NISHIBORI, M.2
NISHIDA- UMEHARA, C.3
TSUDZUKI, M.4
MASABANDA, J.5
-
42
-
-
3042685229
-
A comparative karyological study of the blue-breasted quail (Coturnix chinensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae)
-
SHIBUSAWA, M., C. NISHIDA-UMEHARA, M. TSUDZUKI, J. MASABANDA, D. K. GRIFFIN et al., 2004b A comparative karyological study of the blue-breasted quail (Coturnix chinensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae). Cytogenet. Genome Res. 106: 82-90.
-
(2004)
Cytogenet. Genome Res
, vol.106
, pp. 82-90
-
-
SHIBUSAWA, M.1
NISHIDA-UMEHARA, C.2
TSUDZUKI, M.3
MASABANDA, J.4
GRIFFIN, D.K.5
-
43
-
-
0035143484
-
Calibration of avian molecular clocks
-
VAN TUINEN, M., and S. B. HEDGES, 2001 Calibration of avian molecular clocks. Mol. Biol. Evol. 18: 206-213.
-
(2001)
Mol. Biol. Evol
, vol.18
, pp. 206-213
-
-
VAN TUINEN, M.1
HEDGES, S.B.2
-
44
-
-
34547630892
-
A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination
-
WAHLBERG, P., L. STRÖMSTEDT, X. TORDOIR, M. FOGLIO, S. HEATH et al., 2007 A high-resolution linkage map for the Z chromosome in chicken reveals hot spots for recombination. Cytogenet. Genome Res. 117: 22-29.
-
(2007)
Cytogenet. Genome Res
, vol.117
, pp. 22-29
-
-
WAHLBERG, P.1
STRÖMSTEDT, L.2
TORDOIR, X.3
FOGLIO, M.4
HEATH, S.5
-
45
-
-
38049103011
-
Sex determination in platypus and echidna: Autosomal location of SOX3 confirms the absence of SRY from monotremes
-
WALLIS, M. C., P. D. WATERS, M. L. DELBRIDGE, P. J. KIRBY, A. J. PASK et al., 2007 Sex determination in platypus and echidna: autosomal location of SOX3 confirms the absence of SRY from monotremes. Chromosome Res. 15: 949-959.
-
(2007)
Chromosome Res
, vol.15
, pp. 949-959
-
-
WALLIS, M.C.1
WATERS, P.D.2
DELBRIDGE, M.L.3
KIRBY, P.J.4
PASK, A.J.5
-
46
-
-
33646884615
-
Strong regional biases in nucleotide substitution in the chicken genome
-
WEBSTER, M. T., E. AXELSSON and H. ELLEGREN, 2006 Strong regional biases in nucleotide substitution in the chicken genome. Mol. Biol. Evol. 23: 1203-1216.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 1203-1216
-
-
WEBSTER, M.T.1
AXELSSON, E.2
ELLEGREN, H.3
-
47
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci
, vol.13
, pp. 555-556
-
-
YANG, Z.1
-
48
-
-
23344443983
-
Comparison of the X and Y chromosome organization in Silene latifolia
-
ZLUVOVA, J., B. JANOUSEK, I. NEGRUTIU and B. VYSKOT, 2005 Comparison of the X and Y chromosome organization in Silene latifolia. Genetics 170: 1431-1434.
-
(2005)
Genetics
, vol.170
, pp. 1431-1434
-
-
ZLUVOVA, J.1
JANOUSEK, B.2
NEGRUTIU, I.3
VYSKOT, B.4
|