-
1
-
-
0026509138
-
Mitochondrial DNA evolution at a turtle's pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines
-
Avise J.C., Bowen B.W., Lamb T., Meylan A.B., Bermingham E. Mitochondrial DNA evolution at a turtle's pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines. Mol. Biol. Evol. 1992, 9:457-473.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 457-473
-
-
Avise, J.C.1
Bowen, B.W.2
Lamb, T.3
Meylan, A.B.4
Bermingham, E.5
-
2
-
-
77953131796
-
Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life
-
Barley A.J., Spinks P.Q., Thomson R.C., Shaffer H.B. Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life. Mol. Phylogenet. Evol. 2010, 55:1189-1194.
-
(2010)
Mol. Phylogenet. Evol.
, vol.55
, pp. 1189-1194
-
-
Barley, A.J.1
Spinks, P.Q.2
Thomson, R.C.3
Shaffer, H.B.4
-
3
-
-
84864532988
-
Unified framework to evaluate panmixia and migration direction among multiple sampling locations
-
112532
-
Beerli P., Palczewski M. Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics 2010, 109(112532):v112531.
-
(2010)
Genetics
, vol.109
-
-
Beerli, P.1
Palczewski, M.2
-
4
-
-
36348945345
-
Population genetics and phylogeography of sea turtles
-
Bowen B., Karl S. Population genetics and phylogeography of sea turtles. Mol. Ecol. 2007, 16:4886-4907.
-
(2007)
Mol. Ecol.
, vol.16
, pp. 4886-4907
-
-
Bowen, B.1
Karl, S.2
-
5
-
-
0026358651
-
Evolutionary distinctiveness of the endangered Kemp's ridley sea turtle
-
Bowen B.W., Meylan A.B., Avise J.C. Evolutionary distinctiveness of the endangered Kemp's ridley sea turtle. Nature 1991, 352:709-711.
-
(1991)
Nature
, vol.352
, pp. 709-711
-
-
Bowen, B.W.1
Meylan, A.B.2
Avise, J.C.3
-
6
-
-
0027172795
-
A molecular phylogeny for marine turtles: trait mapping, rate assessment, and conservation relevance
-
Bowen B.W., Nelson W.S., Avise J.C. A molecular phylogeny for marine turtles: trait mapping, rate assessment, and conservation relevance. Proc. Natl. Acad. Sci. USA 1993, 90:5574.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 5574
-
-
Bowen, B.W.1
Nelson, W.S.2
Avise, J.C.3
-
7
-
-
0028680652
-
Global phylogeography of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes
-
Bowen B.W., Kamezaki N., Limpus C.J., Hughes G.R., Meylan A.B., Avise J.C. Global phylogeography of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes. Evolution 1994, 1820-1828.
-
(1994)
Evolution
, pp. 1820-1828
-
-
Bowen, B.W.1
Kamezaki, N.2
Limpus, C.J.3
Hughes, G.R.4
Meylan, A.B.5
Avise, J.C.6
-
8
-
-
0031397041
-
Global phylogeography of the ridley sea turtles (Lepidochelys spp.) as inferred from mitochondrial DNA sequences
-
Bowen B., Clark A., Abreu-Grobois F., Chaves A., Reichart H., Ferl R. Global phylogeography of the ridley sea turtles (Lepidochelys spp.) as inferred from mitochondrial DNA sequences. Genetica 1998, 101:179-189.
-
(1998)
Genetica
, vol.101
, pp. 179-189
-
-
Bowen, B.1
Clark, A.2
Abreu-Grobois, F.3
Chaves, A.4
Reichart, H.5
Ferl, R.6
-
9
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie J.U., Luthy R., Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science 1991, 253:164.
-
(1991)
Science
, vol.253
, pp. 164
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
10
-
-
84864532440
-
-
A new turtle from the Chipola River, Florida. In: Proceedings of the New England Zoology Club
-
Carr Jr., A.F., Marchand, L.J., 1942. A new turtle from the Chipola River, Florida. In: Proceedings of the New England Zoology Club, pp. 95-100.
-
(1942)
, pp. 95-100
-
-
Carr Jr., A.F.1
Marchand, L.J.2
-
11
-
-
0027040164
-
Fossil sea turtles from the early Pliocene Bone Valley Formation, central Florida
-
Dodd C.K., Morgan G.S. Fossil sea turtles from the early Pliocene Bone Valley Formation, central Florida. J. Herpetol. 1992, 1-8.
-
(1992)
J. Herpetol.
, pp. 1-8
-
-
Dodd, C.K.1
Morgan, G.S.2
-
12
-
-
84856633383
-
The complete mitochondrial genome of the loggerhead turtle Caretta caretta (Testudines: Cheloniidae): genome description and phylogenetic considerations
-
Drosopoulou E., Tsiamis G., Mavropoulou M., Vittas S., Katselidis K.A., Schofield G., Palaiologou D., Sartsidis T., Bourtzis K., Pantis J. The complete mitochondrial genome of the loggerhead turtle Caretta caretta (Testudines: Cheloniidae): genome description and phylogenetic considerations. Mit. DNA 2012, 23:1-12.
-
(2012)
Mit. DNA
, vol.23
, pp. 1-12
-
-
Drosopoulou, E.1
Tsiamis, G.2
Mavropoulou, M.3
Vittas, S.4
Katselidis, K.A.5
Schofield, G.6
Palaiologou, D.7
Sartsidis, T.8
Bourtzis, K.9
Pantis, J.10
-
13
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.1
Rambaut, A.2
-
14
-
-
84864534698
-
-
Geneious v4. 7. Biomatters, Ltd., Auckland, New Zealand.
-
Drummond, A., Ashton, B., Cheung, M., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Thierer, T., Wilson, A., 2009. Geneious v4. 7. Biomatters, Ltd., Auckland, New Zealand.
-
(2009)
-
-
Drummond, A.1
Ashton, B.2
Cheung, M.3
Heled, J.4
Kearse, M.5
Moir, R.6
Stones-Havas, S.7
Thierer, T.8
Wilson, A.9
-
15
-
-
84858778486
-
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation
-
Duchene S., Archer F.I., Vilstrup J., Caballero S., Morin P.A. Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One 2011, 6:e27138.
-
(2011)
PLoS One
, vol.6
-
-
Duchene, S.1
Archer, F.I.2
Vilstrup, J.3
Caballero, S.4
Morin, P.A.5
-
16
-
-
0030162289
-
Molecular phylogeny for marine turtles based on sequences of the ND4-leucine tRNA and control regions of mitochondrial DNA
-
Dutton P.H., Davis S.K., Guerra T., Owens D. Molecular phylogeny for marine turtles based on sequences of the ND4-leucine tRNA and control regions of mitochondrial DNA. Mol. Phylogenet. Evol. 1996, 5:511-521.
-
(1996)
Mol. Phylogenet. Evol.
, vol.5
, pp. 511-521
-
-
Dutton, P.H.1
Davis, S.K.2
Guerra, T.3
Owens, D.4
-
17
-
-
0032773265
-
Global phylogeography of the leatherback turtle (Dermochelys coriacea)
-
Dutton P.H., Bowen B.W., Owens D.W., Barragan A., Davis S.K. Global phylogeography of the leatherback turtle (Dermochelys coriacea). J. Zool. 1999, 248:397-409.
-
(1999)
J. Zool.
, vol.248
, pp. 397-409
-
-
Dutton, P.H.1
Bowen, B.W.2
Owens, D.W.3
Barragan, A.4
Davis, S.K.5
-
18
-
-
80052068980
-
Structure of the membrane domain of respiratory complex I
-
Efremov R.G., Sazanov L.A. Structure of the membrane domain of respiratory complex I. Nature 2011, 476:414-420.
-
(2011)
Nature
, vol.476
, pp. 414-420
-
-
Efremov, R.G.1
Sazanov, L.A.2
-
19
-
-
0030207848
-
Phylogeography and population structure of the Atlantic and Mediterranean green turtle Chelonia mydas: a mitochondrial DNA control region sequence assessment
-
Encalada S., Lahanas P., Bjorndal K., Bolten A., Miyamoto M., Bowen B. Phylogeography and population structure of the Atlantic and Mediterranean green turtle Chelonia mydas: a mitochondrial DNA control region sequence assessment. Mol. Ecol. 1996, 5:473-483.
-
(1996)
Mol. Ecol.
, vol.5
, pp. 473-483
-
-
Encalada, S.1
Lahanas, P.2
Bjorndal, K.3
Bolten, A.4
Miyamoto, M.5
Bowen, B.6
-
20
-
-
0000227555
-
Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences
-
Encalada S.E., Bjorndal K.A., Bolten A.B., Zurita J.C., Schroeder B., Possardt E., Sears C.J., Bowen B.W. Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences. Mar. Biol. 1998, 130:567-575.
-
(1998)
Mar. Biol.
, vol.130
, pp. 567-575
-
-
Encalada, S.E.1
Bjorndal, K.A.2
Bolten, A.B.3
Zurita, J.C.4
Schroeder, B.5
Possardt, E.6
Sears, C.J.7
Bowen, B.W.8
-
22
-
-
0001164423
-
Late Neogene Sedimentation Patterns in the Eastern Equatorial Pacific Ocean.
-
Ocean Drilling, Program
-
Farrell, J., Raffi, I., Janecek, T., Murray, D., Levitan, M., Dadey, K., Emeis, K.C., Lyle, M., Flores, J.A., Hovan, S., 1995. Late Neogene Sedimentation Patterns in the Eastern Equatorial Pacific Ocean. Ocean Drilling, Program, pp. 717-756.
-
(1995)
, pp. 717-756
-
-
Farrell, J.1
Raffi, I.2
Janecek, T.3
Murray, D.4
Levitan, M.5
Dadey, K.6
Emeis, K.C.7
Lyle, M.8
Flores, J.A.9
Hovan, S.10
-
23
-
-
79551484061
-
Positive selection on the killer whale mitogenome
-
Foote A.D., Morin P.A., Durban J.W., Pitman R.L., Wade P., Willerslev E., Gilbert M.T.P., da Fonseca R.R. Positive selection on the killer whale mitogenome. Biol. Lett. 2011, 7:116-118.
-
(2011)
Biol. Lett.
, vol.7
, pp. 116-118
-
-
Foote, A.D.1
Morin, P.A.2
Durban, J.W.3
Pitman, R.L.4
Wade, P.5
Willerslev, E.6
Gilbert, M.T.P.7
da Fonseca, R.R.8
-
24
-
-
80053239735
-
Positive Darwinian selection in the piston that powers proton pumps in complex I of the mitochondria of pacific salmon
-
Garvin M.R., Bielawski J.P., Gharrett A.J. Positive Darwinian selection in the piston that powers proton pumps in complex I of the mitochondria of pacific salmon. PLoS One 2011, 6:e24127.
-
(2011)
PLoS One
, vol.6
-
-
Garvin, M.R.1
Bielawski, J.P.2
Gharrett, A.J.3
-
25
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., Bairoch A. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003, 31:3784-3788.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
26
-
-
0031473847
-
SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling
-
Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling. Electrophoresis 1997, 18:2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
27
-
-
84872206548
-
Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear sequencing for population genomics.
-
submitted for publication
-
Hancock-Hanser, B., Frey, A., Leslie, M., Dutton, P.H., Archer, E.I., Morin, P.A., submitted for publication. Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear sequencing for population genomics. Mol. Ecol. Resour.
-
Mol. Ecol. Resour.
-
-
Hancock-Hanser, B.1
Frey, A.2
Leslie, M.3
Dutton, P.H.4
Archer, E.I.5
Morin, P.A.6
-
28
-
-
0039591098
-
The ecological strategies of sea turtles
-
Hendrickson J.R. The ecological strategies of sea turtles. Am. Zool. 1980, 20:597.
-
(1980)
Am. Zool.
, vol.20
, pp. 597
-
-
Hendrickson, J.R.1
-
29
-
-
0006950451
-
Synopsis of the Biological Data on the Green Turtle Chelonia mydas (Linnaeus 1758).
-
Fish and Wildlife Service, US Dept. of the Interior.
-
Hirth, H.F., Fish, U., Service, W., 1997. Synopsis of the Biological Data on the Green Turtle Chelonia mydas (Linnaeus 1758). Fish and Wildlife Service, US Dept. of the Interior.
-
(1997)
-
-
Hirth, H.F.1
Fish, U.2
Service, W.3
-
30
-
-
77956087396
-
Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
-
Ho S.Y.W., Lanfear R. Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks. Mit. DNA 2010, 21:138-146.
-
(2010)
Mit. DNA
, vol.21
, pp. 138-146
-
-
Ho, S.Y.W.1
Lanfear, R.2
-
31
-
-
70350103638
-
Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
-
Ho S.Y.W., Phillips M.J. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 2009, 58:367-380.
-
(2009)
Syst. Biol.
, vol.58
, pp. 367-380
-
-
Ho, S.Y.W.1
Phillips, M.J.2
-
32
-
-
45449120082
-
The effect of inappropriate calibration: three case studies in molecular ecology
-
Ho S.Y.W., Saarma U., Barnett R., Haile J., Shapiro B. The effect of inappropriate calibration: three case studies in molecular ecology. PLoS One 2008, 3:e1615.
-
(2008)
PLoS One
, vol.3
-
-
Ho, S.Y.W.1
Saarma, U.2
Barnett, R.3
Haile, J.4
Shapiro, B.5
-
34
-
-
52049114250
-
In search of the tree of life for turtles
-
Iverson J.B., Brown R., Akre T., Near T., Le M., Thomson R., Starkey D. In search of the tree of life for turtles. Chel. Res. Mono. 2007, 4:85-106.
-
(2007)
Chel. Res. Mono.
, vol.4
, pp. 85-106
-
-
Iverson, J.B.1
Brown, R.2
Akre, T.3
Near, T.4
Le, M.5
Thomson, R.6
Starkey, D.7
-
35
-
-
73349099032
-
Big and slow: phylogenetic estimates of molecular evolution in baleen whales (Suborder Mysticeti)
-
Jackson J., Baker C., Vant M., Steel D., Medrano-González L., Palumbi S. Big and slow: phylogenetic estimates of molecular evolution in baleen whales (Suborder Mysticeti). Mol. Biol. Evol. 2009, 26:2427-2440.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 2427-2440
-
-
Jackson, J.1
Baker, C.2
Vant, M.3
Steel, D.4
Medrano-González, L.5
Palumbi, S.6
-
36
-
-
34548136104
-
Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region
-
Jiang Z., Castoe T., Austin C., Burbrink F., Herron M., McGuire J., Parkinson C., Pollock D. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evol. Biol. 2007, 7:123.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 123
-
-
Jiang, Z.1
Castoe, T.2
Austin, C.3
Burbrink, F.4
Herron, M.5
McGuire, J.6
Parkinson, C.7
Pollock, D.8
-
37
-
-
33847205376
-
The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae)
-
Jung S.O., Lee Y.M., Kartavtsev Y., Park I.S., Kim D.S., Lee J.S. The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae). Mit. DNA 2006, 17:471-483.
-
(2006)
Mit. DNA
, vol.17
, pp. 471-483
-
-
Jung, S.O.1
Lee, Y.M.2
Kartavtsev, Y.3
Park, I.S.4
Kim, D.S.5
Lee, J.S.6
-
38
-
-
0032829944
-
Evolutionary significant units versus geopolitical taxonomy: molecular systematics of an endangered sea turtle (genus Chelonia)
-
Karl S.A., Bowen B.W. Evolutionary significant units versus geopolitical taxonomy: molecular systematics of an endangered sea turtle (genus Chelonia). Conserv. Biol. 1999, 13:990-999.
-
(1999)
Conserv. Biol.
, vol.13
, pp. 990-999
-
-
Karl, S.A.1
Bowen, B.W.2
-
39
-
-
84865476327
-
Common misconceptions in molecular ecology: echoes of the modern synthesis.
-
Karl, S.A., Toonen, R.J., Grant, W.S., Bowen, B.W., 2012. Common misconceptions in molecular ecology: echoes of the modern synthesis. Mol. Ecol. doi:10.1111/j.1365-294X.2012.05576.x.
-
(2012)
Mol. Ecol.
-
-
Karl, S.A.1
Toonen, R.J.2
Grant, W.S.3
Bowen, B.W.4
-
41
-
-
70749083848
-
AIR: a batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses
-
Kumar S., Skjaeveland A., Orr R., Enger P., Ruden T., Mevik B.H., Burki F., Botnen A., Shalchian-Tabrizi K. AIR: a batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinf. 2009, 10:357.
-
(2009)
BMC Bioinf.
, vol.10
, pp. 357
-
-
Kumar, S.1
Skjaeveland, A.2
Orr, R.3
Enger, P.4
Ruden, T.5
Mevik, B.H.6
Burki, F.7
Botnen, A.8
Shalchian-Tabrizi, K.9
-
42
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M., Blackshields G., Brown N., Chenna R., McGettigan P., McWilliam H., Valentin F., Wallace I., Wilm A., Lopez R. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947
-
-
Larkin, M.1
Blackshields, G.2
Brown, N.3
Chenna, R.4
McGettigan, P.5
McWilliam, H.6
Valentin, F.7
Wallace, I.8
Wilm, A.9
Lopez, R.10
-
43
-
-
33644826560
-
Computing Bayes factors using thermodynamic integration
-
Lartillot N., Philippe H. Computing Bayes factors using thermodynamic integration. Syst. Biol. 2006, 55:195.
-
(2006)
Syst. Biol.
, vol.55
, pp. 195
-
-
Lartillot, N.1
Philippe, H.2
-
44
-
-
77955290199
-
Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets
-
Luo A., Qiao H., Zhang Y., Shi W., Ho S., Xu W., Zhang A., Zhu C. Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets. BMC Evol. Biol. 2010, 10:242.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 242
-
-
Luo, A.1
Qiao, H.2
Zhang, Y.3
Shi, W.4
Ho, S.5
Xu, W.6
Zhang, A.7
Zhu, C.8
-
45
-
-
0031760392
-
An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles
-
Mindell D.P., Sorenson M.D., Dimcheff D.E. An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Mol. Biol. Evol. 1998, 15:1568.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1568
-
-
Mindell, D.P.1
Sorenson, M.D.2
Dimcheff, D.E.3
-
46
-
-
77954236362
-
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
-
Morin P.A., Archer F.I., Foote A.D., Vilstrup J., Allen E.E., Wade P., Durban J., Parsons K., Pitman R., Li L. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 2010, 20:908-916.
-
(2010)
Genome Res.
, vol.20
, pp. 908-916
-
-
Morin, P.A.1
Archer, F.I.2
Foote, A.D.3
Vilstrup, J.4
Allen, E.E.5
Wade, P.6
Durban, J.7
Parsons, K.8
Pitman, R.9
Li, L.10
-
47
-
-
63049112416
-
The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals
-
Nabholz B., Glémin S., Galtier N. The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals. BMC Evol. Biol. 2009, 9:54.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 54
-
-
Nabholz, B.1
Glémin, S.2
Galtier, N.3
-
48
-
-
55049101153
-
Evolutionary relationships of marine turtles: a molecular phylogeny based on nuclear and mitochondrial genes
-
Naro-Maciel E., Le M., Fitzsimmons N.N., Amato G. Evolutionary relationships of marine turtles: a molecular phylogeny based on nuclear and mitochondrial genes. Mol. Phylogenet. Evol. 2008, 49:659-662.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 659-662
-
-
Naro-Maciel, E.1
Le, M.2
Fitzsimmons, N.N.3
Amato, G.4
-
49
-
-
13944259078
-
Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles
-
Near T.J., Meylan P.A., Shaffer H.B. Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles. Am. Nat. 2005, 165:137-146.
-
(2005)
Am. Nat.
, vol.165
, pp. 137-146
-
-
Near, T.J.1
Meylan, P.A.2
Shaffer, H.B.3
-
50
-
-
38949173243
-
Caveats on the use of fossil calibrations for molecular dating: a reply to Parham and Irmis
-
Near T.J., Meylan P.A., Shaffer H.B. Caveats on the use of fossil calibrations for molecular dating: a reply to Parham and Irmis. Am. Nat. 2008, 171:137-140.
-
(2008)
Am. Nat.
, vol.171
, pp. 137-140
-
-
Near, T.J.1
Meylan, P.A.2
Shaffer, H.B.3
-
51
-
-
84864542291
-
The Complete Sequence of Chelydra serpentina.
-
Anhui Normal University, East Beijing Road 1, Wuhu, Anhui 241000, China.
-
Nie, L.W., Yan, L., 2006. The Complete Sequence of Chelydra serpentina. College of Life Science, Anhui Normal University, East Beijing Road 1, Wuhu, Anhui 241000, China.
-
(2006)
College of Life Science
-
-
Nie, L.W.1
Yan, L.2
-
52
-
-
77952035329
-
Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications
-
Okajima Y., Kumazawa Y. Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications. BMC Evol. Biol. 2010, 10:141.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 141
-
-
Okajima, Y.1
Kumazawa, Y.2
-
53
-
-
77949527981
-
Pegas: an R package for population genetics with an integrated, Äìmodular approach
-
Paradis E. Pegas: an R package for population genetics with an integrated, Äìmodular approach. Bioinformatics 2010, 26:419-420.
-
(2010)
Bioinformatics
, vol.26
, pp. 419-420
-
-
Paradis, E.1
-
54
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E., Claude J., Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289.
-
(2004)
Bioinformatics
, vol.20
, pp. 289
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
55
-
-
38349152557
-
Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al
-
Parham J.F., Irmis R.B. Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al. Am. Nat. 2008, 171:132-136.
-
(2008)
Am. Nat.
, vol.171
, pp. 132-136
-
-
Parham, J.F.1
Irmis, R.B.2
-
56
-
-
0002393841
-
The use of tree comparison metrics
-
Penny D., Hendy M. The use of tree comparison metrics. Syst. Zool. 1985, 34:75-82.
-
(1985)
Syst. Zool.
, vol.34
, pp. 75-82
-
-
Penny, D.1
Hendy, M.2
-
57
-
-
84872218640
-
-
R Development Core Team, R., 2006. R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing.
-
R Development Core Team, R., 2006. R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing.
-
-
-
-
58
-
-
84872216852
-
-
Tracer: a Program for Analysing Results from Bayesian MCMC Programs such as BEAST & MrBayes.
-
Rambaut, A., Drummond, A., 2005. Tracer: a Program for Analysing Results from Bayesian MCMC Programs such as BEAST & MrBayes. http://evolve.zoo.ox.ac.uk/software.html.
-
(2005)
-
-
Rambaut, A.1
Drummond, A.2
-
59
-
-
0035673444
-
The units of selection of mitochondrial DNA
-
Rand D.M. The units of selection of mitochondrial DNA. Ann. Rev. Ecol. Syst. 2001, 415-448.
-
(2001)
Ann. Rev. Ecol. Syst.
, pp. 415-448
-
-
Rand, D.M.1
-
60
-
-
0034782682
-
Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes)
-
Randi E., Lucchini V., Hennache A., Kimball R.T., Braun E.L., Ligon J.D. Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Mol. Phylogenet. Evol. 2001, 19:187-201.
-
(2001)
Mol. Phylogenet. Evol.
, vol.19
, pp. 187-201
-
-
Randi, E.1
Lucchini, V.2
Hennache, A.3
Kimball, R.T.4
Braun, E.L.5
Ligon, J.D.6
-
61
-
-
0001265393
-
Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene)
-
Rogl F. Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene). Ann. Nat. Mus. Wien. 1998, 99:279-310.
-
(1998)
Ann. Nat. Mus. Wien.
, vol.99
, pp. 279-310
-
-
Rogl, F.1
-
62
-
-
0000269196
-
Progress, problems and patterns in the biogeography of reef corals and other tropical marine organisms
-
Rosen B.R. Progress, problems and patterns in the biogeography of reef corals and other tropical marine organisms. Helg. Mar. Res. 1988, 42:269-301.
-
(1988)
Helg. Mar. Res.
, vol.42
, pp. 269-301
-
-
Rosen, B.R.1
-
63
-
-
79951548848
-
Phangorn: phylogenetic analysis in R
-
Schliep K.P. Phangorn: phylogenetic analysis in R. Bioinformatics 2011, 27:592.
-
(2011)
Bioinformatics
, vol.27
, pp. 592
-
-
Schliep, K.P.1
-
64
-
-
0042622380
-
SWISS-MODEL: an automated protein homology-modeling server
-
Schwede T., Kopp J., Guex N., Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 2003, 31:3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
65
-
-
84860531403
-
Mitogenomic sequences better resolve stock structure of southern Greater Caribbean green turtle rookeries
-
Shamblin B.M., Bjorndal K.A., Bolten A.B., Hillis A.Z.M., Lundgren I., Naro-Maciel E., Nairn C.J. Mitogenomic sequences better resolve stock structure of southern Greater Caribbean green turtle rookeries. Mol. Ecol. 2012, 21:2330-2430.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 2330-2430
-
-
Shamblin, B.M.1
Bjorndal, K.A.2
Bolten, A.B.3
Hillis, A.Z.M.4
Lundgren, I.5
Naro-Maciel, E.6
Nairn, C.J.7
-
66
-
-
3042824161
-
Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: implications for conservation theory
-
Shanker K., Ramadevi J., Choudhury B.C., Singh L., Aggarwal R.K. Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: implications for conservation theory. Mol. Ecol. 2004, 13:1899-1909.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 1899-1909
-
-
Shanker, K.1
Ramadevi, J.2
Choudhury, B.C.3
Singh, L.4
Aggarwal, R.K.5
-
67
-
-
0023084310
-
Calibration of mitochondrial DNA evolution in geese
-
Shields G.F., Wilson A.C. Calibration of mitochondrial DNA evolution in geese. J. Mol. Evol. 1987, 24:212-217.
-
(1987)
J. Mol. Evol.
, vol.24
, pp. 212-217
-
-
Shields, G.F.1
Wilson, A.C.2
-
68
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 1999, 16:1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
69
-
-
80054941921
-
What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny
-
Talavera G., Vila R. What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny. BMC Evol. Biol. 2011, 11:315.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 315
-
-
Talavera, G.1
Vila, R.2
-
70
-
-
84864530945
-
The Complete Nucleotide Sequence of Olive Ridley Seaturtle (Lepidochelys olivacea) Mitochondrial Genome.
-
30, Gorachand Road, Kolkata, W. Bengal 700014, India.
-
Tandon, M., Trivedi, R., Kashyap, V.K., 2006. The Complete Nucleotide Sequence of Olive Ridley Seaturtle (Lepidochelys olivacea) Mitochondrial Genome. National DNA Analysis Centre, Central Forensic Science Laboratory, 30, Gorachand Road, Kolkata, W. Bengal 700014, India.
-
(2006)
National DNA Analysis Centre, Central Forensic Science Laboratory
-
-
Tandon, M.1
Trivedi, R.2
Kashyap, V.K.3
-
71
-
-
80155136368
-
The complete mitogenome of the snakehead Channa argus (Perciformes: Channoidei): genome characterization and phylogenetic implications
-
Wang J., Yang G. The complete mitogenome of the snakehead Channa argus (Perciformes: Channoidei): genome characterization and phylogenetic implications. Mit. DNA 2011, 22:120-129.
-
(2011)
Mit. DNA
, vol.22
, pp. 120-129
-
-
Wang, J.1
Yang, G.2
-
72
-
-
0001737827
-
Paleocene turtles from the Aquia and Brightseat formations, with a discussion of their bearing on sea turtle evolution and phylogeny
-
Weems R. Paleocene turtles from the Aquia and Brightseat formations, with a discussion of their bearing on sea turtle evolution and phylogeny. Proc. Biol. Soc. Wash. 1988, 101:109-145.
-
(1988)
Proc. Biol. Soc. Wash.
, vol.101
, pp. 109-145
-
-
Weems, R.1
-
73
-
-
0037461034
-
TreeSAAP: selection on amino acid properties using phylogenetic trees
-
Woolley S., Johnson J., Smith M.J., Crandall K.A., McClellan D.A. TreeSAAP: selection on amino acid properties using phylogenetic trees. Bioinformatics 2003, 19:671.
-
(2003)
Bioinformatics
, vol.19
, pp. 671
-
-
Woolley, S.1
Johnson, J.2
Smith, M.J.3
Crandall, K.A.4
McClellan, D.A.5
-
74
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
75
-
-
0001334418
-
Patterns of phylogenetic differentiation in the toxochelyid and cheloniid sea turtles
-
Zangerl R. Patterns of phylogenetic differentiation in the toxochelyid and cheloniid sea turtles. Am. Zool. 1980, 20:585.
-
(1980)
Am. Zool.
, vol.20
, pp. 585
-
-
Zangerl, R.1
-
76
-
-
84872215355
-
-
GARLI: Genetic Algorithm for Rapid Likelihood Inference
-
Zwickl, D., 2006. GARLI: Genetic Algorithm for Rapid Likelihood Inference. http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html.
-
(2006)
-
-
Zwickl, D.1
|