Global phylogeography of the ridley sea turtles (Lepidochelys spp.) as inferred from mitochondrial DNA sequences

Genetica

Volumn 101, Issue 3, 1997, Pages 179-189

  Bowen, B W ^a   Clark, A M ^a   Abreu Grobois, F A ^b   Chaves, A ^c   Reichart, H A ^d   Ferl, R J ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^c UNIVERSIDAD DE COSTA RICA   (Costa Rica)

^d Meteorological Service Suriname   (Suriname)

Author keywords

Biogeography; Conservation; Control region; Kemp's ridley; Olive ridley

Indexed keywords

ATLANTIC OCEAN; BEHAVIOR; HAPLOTYPE; LINEAGE; MITOCHONDRIAL DNA; NUCLEOTIDE; PHYLOGEOGRAPHY;

AMPHIBIA; CHELONIIDAE; LEPIDOCHELYS; LEPIDOCHELYS KEMPI; LEPIDOCHELYS KEMPII; LEPIDOCHELYS OLIVACEA; OLEA EUROPAEA; REPTILIA; TESTUDINES;

EID: 0031397041     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018382415005     Document Type: Article

References (64)

1. Abreu-Grobois, F.A., A.L. Bass, R. Brisen&tild;o-Duen&tild;as, P.H. Dutton, S.E. Encalada & N.N. FitzSimmons, 1996. Mitochondrial DNA D-loop sequences of marine turtles, pp. 147-162 in Proceedings of the International Symposium on Sea Turtle Conservation Genetics, edited by B.W. Bowen and W.N. Witzell. NOAA Tech. Memo. NMFS-SEFSC-396 (National Technical Information Service, Springfield, VA).
2. Allard, M.W., M.M. Miyamoto, K.A. Bjorndal, A.B. Bolten & B.W. Bowen, 1994. Support for natal homing in green turtles from mitochondrial DNA sequences. Copeia 1994: 34-41.
3. Anonymous, 1976. Huge turtle slaughter in India. Oryx 13: 325.
4. Avise, J.C., 1994. Molecular Markers, Natural History, and Evolution. Chapman and Hall, New York, NY.
5. Bass, A.L., D.A. Good, K.A. Bjorndal, J.I. Richardson, Z.-M. Hillis, J.A. Horrocks & B.W. Bowen, 1996. Testing models of female migratory behavior and population structure in the Caribbean hawksbill turtle, Eretmochelys imbricata, with mtDNA control region sequences. Mol. Ecol. 5: 321-328.
6. Birky, C. W. Jr., T. Maruyama & P. Fuerst, 1983. An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results. Genetics 103: 513-527.
7. Bolten, A.B., K.A. Bjorndal, H.R. Martins, T. Dellinger, M.J. Biscoito, S.E. Encalada & B.W. Bowen, 1998. Trans-Atlantic developmental migrations of loggerhead sea turtles demonstrated by mtDNA sequence analysis. Ecol. Appl. 8: 1-7.
8. Bowen, B.W. & S.A. Karl, 1996. Population structure, phylogeography, and molecular evolution, pp. 29-50 in The Biology of Sea Turtles, edited by P.L. Lutz and J.A. Musick. CRC Press, Boca Raton, FL.
9. Bowen, B.W. & W.N. Witzell, 1996. Introduction to the international symposium on sea turtle conservation genetics, pp. 1-7 in Proceedings of the International Symposium on Sea Turtle Conservation Genetics edited by B.W. Bowen and W.N. Witzell. NOAA Tech. Memo. NMFS-SEFSC-396, National Technical Information Service, Springfield, VA.
10. Bowen, B.W. & W.S. Grant, 1997. Phylogeography of the sardines (Sardinops spp.): assessing biogeographic models and population histories in temperate upwelling zones. Evolution 51: 1601-1610.
11. Bowen, B.W., A.B. Meylan & J.C. Avise, 1991. Evolutionary distinctiveness of the endangered Kemp's ridley sea turtle. Nature 352: 709-711.
12. Bowen, B.W., A.B. Meylan, J. P. Ross, C.J. Limpus, G.H. Balazs & J.C. Avise, 1992. Global population structure and natural history of the green turtle (Chelonia mydas) in terms of matriarchal phylogeny. Evolution 46: 865-881.
13. Bowen, B.W., W.S. Nelson & J.C. Avise, 1993. A molecular phylogeny for marine turtles: trait mapping, rate assessment, and conservation relevance. Proc. Natl. Acad. Sci. USA 90: 5574- 5577.
14. Bowen, B.W., N. Kamezaki, C.J. Limpus, G.H. Hughes, A.B. Meylan & J.C. Avise, 1994. Global phylogeography of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes. Evolution 48: 1820-1828.
15. Bowen, B.W., F.A. Abreu-Grobois, G.H. Balazs, N. Kamezaki, C.J. Limpus & R.J. Ferl, 1995. Trans-Pacific migrations of the logger- head sea turtle demonstrated with mitochondrial DNA markers. Proc. Natl. Acad. Sci. USA 92: 3731-3734.
16. Bowen, B.W., A.L. Bass, A. Garcia, C. E. Diez, R. van Dam, A. Bolten, K.A. Bjorndal, M.M. Miyamoto & R.J. Ferl, 1996. The origin of hawksbill turtles in a Caribbean feeding area as indicated by genetic markers. Ecol. Appl. 6: 566-572.
17. Briggs, J.C., 1974. Marine Zoogeography. McGraw-Hill Book Co. New York, NY.
18. Broderick, D., C. Moritz, J.D. Miller, M. Guinea, R.J. Prince & C.J. Limpus, 1994. Genetic studies of the hawksbill turtle: evidence for multiple stocks and mixed feeding grounds in Australian waters. Pacific Conserv. Biol. 1: 123-131.
19. Carr, A.F., 1963. Panspecific reproductive convergence in Lepidochelys kempi. Ergebn. Biol. 26:298-303.
20. Donnelly, T.W., 1989. History of marine barriers and terrestrial connections: Caribbean paleogeographic inference from pelagic sediment analysis, pp. 103-118 in Biogeography of the West Indies: Past, Present, and Future, edited by C.A. Woods. Sandhill Crane Press, Gainesville, FL.
21. Dutton, P.H., S.K. Davis, T. Guerra & D. Owens, 1996. Molecular phylogeny for marine turtles based on sequences of the ND4- leucine tRNA and control regions of mitochondrial DNA. Mol. Phylogen. Evol. 5: 511-521.
22. Encalada, S.E., P.N. Lahanas, K.A. Bjorndal, A.B. Bolten, M.M. Miyamoto & B. W. Bowen, 1996. Phylogeography and population structure of the green turtle (Chelonia mydas) in the Atlantic Ocean and Mediterranean Sea: a mitochondrial DNA control region sequence assessment. Mol. Ecol. 5: 473-484.
23. Encalada, S.E., K.A. Bjorndal, A.B. Bolten, J.C. Zurita, B. Schroeder, E. Possardt, C.J. Sears & B.W. Bowen, 1998. Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean regions as inferred from mtDNA control region sequences. Mar. Biol. In press.
24. Excoffier, L., P.E. Smouse & J.M. Quattro, 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial restriction data. Genetics 131:479-491.
25. Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package). Version 3.5. Computer program and manual distributed by the author.
26. FitzSimmons, N.N., C. Moritz & S.S. Moore, 1995. Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution. Mol. Biol. Evol. 12: 432-440.
27. FitzSimmons, N.N., C.J. Limpus, J.A. Norman, A.R. Goldizen, J.D. Miller & C. Moritz, 1997. Philopatry of male marine turtles inferred from mitochondrial DNA markers. Proc. Natl. Acad. Sci. USA 94: 8912-8917.
28. Guilderson, T. P., R. G. Fairbanks & J. L. Rubenstone, 1994. Tropical temperature variation since 20,000 years ago: modulating interhemispheric climate change. Science 263: 663-665.
29. Hendrickson, J.R., 1980. The ecological strategies of sea turtles. Amer. Zool. 20: 597-608.
30. Hildebrand, H.H., 1963. Hallazgo del area de anidacion de la tortuga marina 'lora', Lepidochelys kempi (Garman), en la costa occidental del Golfo de Mexico. Ciencia, Mexico 22: 105-112.
31. Hillis, D. M., C. Moritz & B. K. Mable, eds., 1996. Molecular Systematics, Second edition, Sinauer, Sunderland, MA.
32. Hughes, G.R., 1972. The olive ridley sea-turtle (Lepidochelys olivacea) in South-east Africa. Biol. Cons. 4: 128-134.
33. Innes, M. A., D. H. Gelfand & J. J. Sninsky, 1995. PCR Strategies. Academic Press, New York, NY
34. Karl, S.A., 1996. Hybridization and taxonomy of marine turtles: anonymous nuclear DNA sequence analyses, pp. 99-108 in Proceedings of the International Symposium on Sea Turtle Conservation Genetics, edited by B.W. Bowen and W Witzell. NOAA Tech. Memo. NMFS-SEFSC-396, National Technical Information Service, Springfield, VA.
35. Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
36. Kotilainen, A. T. & N. J. Shackleton, 1995. Rapid climate variability in the North Pacific Ocean during the past 95,000 years. Nature 377: 323-326.
37. Kumar, S., K. Tamura & M. Nei, 1994. MEGA: Molecular evolutionary genetic analysis softwear for microcomputers. Cabios 10: 189-191.
38. Lahanas, P.N., M.M. Miyamoto, K.A. Bjorndal & A.B. Bolten, 1994. Molecular evolution and population genetics of Greater Caribbean green turtles (Chelonia mydas) as inferred from mitochondrial DNA control region sequences. Genetica 94: 57-67.
39. Lahanas, P.N., K.A. Bjorndal, A.B. Bolten, S. Encalada, M.M. Miyamoto, R. Valverde & B.W. Bowen, 1998. Genetic composition of a green turtle feeding ground population: evidence for multiple origins. Mar. Biol. In press
40. Lamb, T., C. Lydeard, R. B. Walker & J. W. Gibbons, 1994. Molecular systematics of map turtles (Graptemys): a comparison of mitochondrial DNA restriction site versus sequence data. Syst. Biol. 43: 543-559.
41. Marquez, R., 1994. Synopsis of Biological Data on the Kemp's Ridley Turtle, Lepidochelys kempi (Garman, 1880). NOAA Tech. Memo. NMFS-SEFSC-343, National Technical Information Service, Springfield, VA.
42. Marquez, R., O. Villanueva & C. Penaflores. 1976. Sinopsis de datos biológicos sobre la tortuga golfina Lepidochelys olivacea (Eschscholtz, 1829). INP Sinopsis Pesca No. 2 SIC-SP-INP (Mexico).
43. McElroy, D., P. Moran, E. Bermingham & I. Kornfield, 1992. REAP: an integrated environment for the manipulation and phylogenetic analysis of restriction data. J. Heredity 83: 157-158.
44. Meylan, A.B., B.W. Bowen & J.C. Avise, 1990. A genetic test of the natal homing versus social facilitation models for green turtle migration. Science 248: 724-727.
45. Nei, M., 1987. Molecular Evolutionary Genetics. Columbia Univ. Press, New York, NY.
46. Norman, J.A., C. Moritz & C.J. Limpus, 1994. Mitochondrial DNA control region polymorphisms: Genetic markers for ecological studies of marine turtles. Mol. Ecol. 3: 363-373.
47. Owens, D.W. & G.W. Ruiz, 1980. New methods of obtaining blood and cerebrospinal fluid from marine turtles. Herpetologica 36: 17-20.
48. Palumbi, S.R., 1994. Genetic divergence, reproductive isolation, and marine speciation. Ann. Rev. Ecol. Syst. 25: 547-572.
49. Peare, T. & P.O. Parker, 1996. The use of multilocus minisatellite DNA fingerprinting to examine local genetic structure within green turtle rookeries, pp. 87-94 in Proceedings of the International Symposium on Sea Turtle Conservation Genetics, edited by B.W. Bowen and W.N. Witzell. NOAA Tech. Memo. NMFSSEFSC-396, National Technical Information Service, Springfield, VA.
50. Plotkin, P.T., R.A. Byles, D.C. Rostal & D.W. Owens, 1995. Independent versus socially facilitated oceanic migrations of the olive ridley, Lepidochelys olivacea. Mar. Biol. 122: 137-143.
51. Pritchard, P.C.H., 1969. Studies of the Systematics and Reproductive Cycles of the Genus Lepidochelys. Ph.D. Thesis, University of Florida, Gainesville, FL.
52. Pritchard, P.C.H. & P. Trebbau, 1984. The Turtles of Venezuela. Contrib. Herpetol. 2, Society for the Study of Amphibians and Reptiles, Fundacion de Internados Rurales, Caracas, Venezuela.
53. Reichart, H.A., 1993. Synopsis of biological data on the olive ridley sea turtle Lepidochelys olivacea (Eschscholtz, 1829) in the western Atlantic. NOAA Tech. Memo. NMFS-SEFSC-336, National Technical Information Service, Springfield, VA.
54. Roff, D. A. & P. Bentzen, 1989. The statistical analysis of mitochondrial DNA polymorphisms: chi-square and the problem of small samples. Mol. Biol. Evol. 6: 539-545.
55. Ross, J.P., 1982. Historical decline of the loggerhead, ridley, and leatherback sea turtles, pp. 189-195 in Biology and Conservation of Sea Turtles, edited by K.A. Bjorndal. Smithsonian Institution Press, Washington D.C., pp. 189-195.
56. Saitou, N. & M. Nei, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-25.
57. Slatkin, M., 1987. Gene flow and the geographic structure of natural populations. Science 236: 787-792.
58. Slatkin, M. & N.H. Barton, 1989. A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43: 1349-1368.
59. Swofford, D.L., 1993. PAUP: Phylogeny analysis using parsimony, version 3.1.1, Illinois Natural History Survey, Champaign, IL.
60. Takahata, N. & S.R. Palumbi, 1985. Extranuclear differentiation and gene flow in the finite island model. Genetics 109: 441-457.
61. Walker, D., V.J. Burke, I. Barak & J.C. Avise, 1995. A comparison of mtDNA restriction site vs. control region sequences in phylogeographic assessment of the musk turtle (Sternotherus minor). Mol. Ecol. 4: 365-373.
62. White, P.S. & L.D. Densmore, 1992. Mitochondrial DNA isolation, pp. 29-58 in Molecular Genetic Analysis of Populations: a practical approach, edited by A.R. Hoezel. IRL Press at Oxford Univ. Press, New York, NY.
63. Woody, J.B., 1985. Kemp's ridley continues decline. Mar. Turtle Newsl. 35: 4-5.
64. Zaykin, D.V. & A.I. Pudovkin, 1993. Two programs to estimate significance of X2 values using pseudo-probability tests. J. Heredity 84: 152.