Dynamic interactions between Bombyx mori nucleopolyhedrovirus and its host cells revealed by transcriptome analysis

Journal of Virology

Volumn 86, Issue 13, 2012, Pages 7345-7359

  Xue, Jian ^a   Qiao, Nan ^b,c,d   Zhang, Wei ^b,c,d   Cheng, Ruo Lin ^a   Zhang, Xiao Qin ^a   Bao, Yan Yuan ^a   Xu, Yi Peng ^a   Gu, Lin Zhu ^a   Han, Jing Dong Jackie ^b   Zhang, Chuan Xi ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CG30 PROTEIN; DEFEROXAMINE MESYLATE; PE38 PROTEIN; PROTEASOME; PROTEASOME INHIBITOR; PROTEIN IE2; PROTEIN PK 1; PROTEIN PK 2; TRANSCRIPTOME; UBIQUITIN; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS; CELL KINETICS; CONTROLLED STUDY; CYTOSKELETON; ENERGY METABOLISM; GENE DOSAGE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; GENOME ANALYSIS; IRON METABOLISM; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; RNA ANALYSIS; SIGNAL TRANSDUCTION; SPLICEOSOME; TRANSCRIPTION REGULATION; TRANSLATION REGULATION; VIRUS CELL INTERACTION; VIRUS GENE;

ANIMALS; BOMBYX; CELL LINE; GENE EXPRESSION PROFILING; HOST-PATHOGEN INTERACTIONS; MICROARRAY ANALYSIS; NUCLEOPOLYHEDROVIRUS; PROTEIN INTERACTION MAPPING; VIRAL PROTEINS;

BOMBYX MORI NPV;

EID: 84864150211     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.07217-12     Document Type: Article

References (68)

1. Adams J, et al. 1999. Proteasome inhibitors: a novel class of potent and effective antitumor agents. Cancer Res. 59:2615-2622.
2. Akusjarvi G, Stevenin J. 2003. Remodelling of the host cell RNA splicing machinery during an adenovirus infection. Curr. Top. Microbiol. Immunol. 272:253-286.
3. Ansorge WJ. 2009. Next-generation DNA sequencing techniques. Nat. Biotechnol. 25:195-203.
4. Bao YY, et al. 2010. Comparative analysis of Bombyx mori nucleopolyhedrovirus responsive genes in fat body and haemocyte of B. mori resistant and susceptible strains. Insect Mol. Biol. 19:347-358.
5. Bao YY, et al. 2009. Gene expression profiling of resistant and susceptible Bombyx mori strains reveals nucleopolyhedrovirus-associated variations in host gene transcript levels. Genomics 94:138 -145.
6. Bernal V, Carinhas N, Yokomizo AY, Carrondo MJ, Alves PM. 2009. Cell density effect in the baculovirus-insect cells system: a quantitative analysis of energetic metabolism. Biotechnol. Bioeng. 104:162-180.
7. Braunagel SC, Parr R, Belyavskyi M, Summers MD. 1998. Autographa californica nucleopolyhedrovirus infection results in Sf9 cell cycle arrest at G2/M phase. Virology 244:195-211.
8. Braunagel SC, Summers MD. 2007. Molecular biology of the baculovirus occlusion-derived virus envelope. Curr. Drug Targets 8:1084 -1095.
9. Busino L, et al. 2003. Degradation of Cdc25A by beta-TrCP during S phase and in response to DNA damage. Nature 426:87-91.
10. Carinhas N, et al. 2010. Improving baculovirus production at high cell density through manipulation of energy metabolism. Metab. Eng. 12:39-52.
11. Carstens EB, Liu JJ, Dominy C. 2002. Identification and molecular characterization of the baculovirus CfMNPV early genes: ie-1, ie-2 and pe38. Virus Res. 83:13-30.
12. Davy C, Doorbar J. 2007. G2/M cell cycle arrest in the life cycle of viruses. Virology 368:219 -226.
13. Donzelli M, et al. 2002. Dual mode of degradation of Cdc25 A phosphatase. EMBO J. 21:4875- 4884.
14. Drakesmith H, Prentice A. 2008. Viral infection and iron metabolism. Nat. Rev. Microbiol. 6:541-552.
15. Dreschers S, Roncarati R, Knebel-Morsdorf D. 2001. Actin rearrangement-inducing factor of baculoviruses is tyrosine phosphorylated and colocalizes to F-actin at the plasma membrane. J. Virol. 75:3771-3778.
16. Fukuhara T, et al. 2006. Utilization of host SR protein kinases and RNAsplicing machinery during viral replication. Proc. Natl. Acad. Sci. U. S. A. 103:11329 -11333.
17. Gao G, Luo H. 2006. The ubiquitin-proteasome pathway in viral infections. Can. J. Physiol. Pharmacol. 84:5-14.
18. Goley ED, et al. 2006. Dynamic nuclear actin assembly by Arp2/3 complex and a baculovirus WASP-like protein. Science 314:464-467.
19. Gomi S, Majima K, Maeda S. 1999. Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus. J. Gen. Virol. 80(Pt 5):1323-1337.
20. Hayakawa T, Rohrmann GF, Hashimoto Y. 2000. Patterns of genome organization and content in lepidopteran baculoviruses. Virology 278:1-12.
21. Iwanaga M, Shimada T, Kobayashi M, Kang WK. 2007. Identification of differentially expressed host genes in Bombyx mori nucleopolyhedrovirus infected cells by using subtractive hybridization. Appl. Entomol. Zool. 42:151-159.
22. Jensen LJ, et al. 2009. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37:D412- D416.
23. Jung T, Catalgol B, Grune T. 2009. The proteasomal system. Mol. Aspects Med. 30:191-296.
24. Kanehisa M, Goto S. 2000. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28:27-30.
25. Kanlaya R, Pattanakitsakul SN, Sinchaikul S, Chen ST, Thongboonkerd V. 2010. The ubiquitin-proteasome pathway is important for dengue virus infection in primary human endothelial cells. J. Proteome Res. 9:4960- 4971.
26. Katsuma S, Kawaoka S, Mita K, Shimada T. 2008. Genome-wide survey for baculoviral host homologs using the Bombyx genome sequence. Insect Biochem. Mol. Biol. 38:1080 -1086.
27. Katsuma S, Mita K, Shimada T. 2007. ERK- and JNK-dependent signaling pathways contribute to Bombyx mori nucleopolyhedrovirus infection. J. Virol. 81:13700 -13709.
28. Katsuma S, Shimada T, Kobayashi M. 2004. Characterization of the baculovirus Bombyx mori nucleopolyhedrovirus gene homologous to the mammalian FGF gene family. Virus Genes 29:211-217.
29. Kost TA, Condreay JP, Jarvis DL. 2005. Baculovirus as versatile vectors for protein expression in insect and mammalian cells. Nat. Biotechnol. 23:567-575.
30. Larade K, Storey KB. 2004. Accumulation and translation of ferritin heavy chain transcripts following anoxia exposure in a marine invertebrate. J. Exp. Biol. 207:1353-1360.
31. Llamazares S, et al. 1991. polo encodes a protein kinase homolog required for mitosis in Drosophila. Genes Dev. 5:2153-2165.
32. Marek M, Merten OW, Galibert L, Vlak JM, van Oers MM. 2011. Baculovirus VP80 protein and the F-actin cytoskeleton interact and connect the viral replication factory with the nuclear periphery. J. Virol. 85: 5350-5362.
33. Mishra G, Chadha P, Das RH. 2008. Serine/threonine kinase (pk-1) is a component of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) very late gene transcription complex and it phosphorylates a 102 kDa polypeptide of the complex. Virus Res. 137:147-149.
34. Momose F, et al. 2001. Cellular splicing factor RAF-2p48/NPI-5/BAT1/UAP56 interacts with the influenza virus nucleoprotein and enhances viral RNA synthesis. J. Virol. 75:1899 -1908.
35. Muhlemann O, Yue BG, Petersen-Mahrt S, Akusjarvi G. 2000. A novel type of splicing enhancer regulating adenovirus pre-mRNA splicing. Mol. Cell. Biol. 20:2317-2325.
36. Nobiron I, O'Reilly DR, Olszewski JA. 2003. Autographa californica nucleopolyhedrovirus infection of Spodoptera frugiperda cells: a global analysis of host gene regulation during infection, using a differential display approach. J. Gen. Virol. 84:3029 -3039.
37. Nojima T, et al. 2009. Herpesvirus protein ICP27 switches PML isoform by altering mRNA splicing. Nucleic Acids Res. 37:6515- 6527.
38. Norvell A, Debec A, Finch D, Gibson L, Thoma B. 2005. Squid is required for efficient posterior localization of oskar mRNA during Drosophila oogenesis. Dev. Genes Evol. 215:340 -349.
39. Norvell A, Kelley RL, Wehr K, Schupbach T. 1999. Specific isoforms of squid, a Drosophila hnRNP, perform distinct roles in Gurken localization during oogenesis. Genes Dev. 13:864-876.
40. Ohkawa T, Volkman LE, Welch MD. 2010. Actin-based motility drives baculovirus transit to the nucleus and cell surface. J. Cell Biol. 190:187- 195.
41. Okano K, Shimada T, Mita K, Maeda S. 2001. Comparative expressedsequence-tag analysis of differential gene expression profiles in BmNPVinfected BmN cells. Virology 282:348 -356.
42. Ong DS, Wang L, Zhu Y, Ho B, Ding JL. 2005. The response of ferritin to LPS and acute phase of Pseudomonas infection. J. Endotoxin Res. 11: 267-280.
43. Palomares LA, Lopez S, Ramirez OT. 2004. Utilization of oxygen uptake rate to assess the role of glucose and glutamine in the metabolism of infected insect cell cultures. Biochem. Eng. J. 19:87-93.
44. Pederson T, Aebi U. 2005. Nuclear actin extends, with no contraction in sight. Mol. Biol. Cell 16:5055-5060.
45. Peng K, et al. 2010. Identification of protein-protein interactions of the occlusion-derived virus-associated proteins of Helicoverpa armigera nucleopolyhedrovirus. J. Gen. Virol. 91:659-670.
46. Percipalle P, Visa N. 2006. Molecular functions of nuclear actin in transcription. J. Cell Biol. 172:967-971.
47. Pertea G, et al. 2003. TIGR Gene Indices Clustering Tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19:651- 652.
48. Pestic-Dragovich L, et al. 2000. A myosin I isoform in the nucleus. Science 290:337-341.
49. Philimonenko VV, et al. 2004. Nuclear actin and myosin I are required for RNA polymerase I transcription. Nat. Cell Biol. 6:1165-1172.
50. Placek BJ, Berger SL. 2010. Chromatin dynamics during herpes simplex virus-1 lytic infection. Biochim. Biophys. Acta 1799:223-227.
51. Prikhod'ko EA, Miller LK. 1998. Role of baculovirus IE2 and its RING finger in cell cycle arrest. J. Virol. 72:684-692.
52. Puvion-Dutilleul F, Bachellerie JP, Visa N, Puvion E. 1994. Rearrangements of intranuclear structures involved in RNA processing in response to adenovirus infection. J. Cell Sci. 107(Pt 6):1457-1468.
53. Reeves MB. 2011. Chromatin-mediated regulation of cytomegalovirus gene expression. Virus Res. 157:134 -143.
54. Reilly LM, Guarino LA. 1994. The pk-1 gene of Autographa californica multinucleocapsid nuclear polyhedrosis virus encodes a protein kinase. J. Gen. Virol. 75(Pt 11):2999 -3006.
55. Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139 -140.
56. Rohrmann GF. 26 January 2011, posting date. Chapter 1. Introduction to the baculoviruses, their taxonomy, and evolution. In Rohrmann GF (ed), Baculovirus molecular biology, 2nd ed. National Center for Biotechnology Information, Bethesda, MD.
57. Rohrmann GF. 26 January 2011, posting date. Chapter 3. The baculovirus replication cycle: effects on cells and insects. In Rohrmann GF (ed), Baculovirus molecular biology, 2nd ed. National Center for Biotechnology Information, Bethesda, MD.
58. Rohrmann GF. 26 January 2011, posting date. Chapter 8. Host resistance and susceptibility. In Rohrmann GF (ed), Baculovirus molecular biology, 2nd ed. National Center for Biotechnology Information, Bethesda, MD.
59. Sagisaka A, et al. 2010. Genome-wide analysis of host gene expression in the silkworm cells infected with Bombyx mori nucleopolyhedrovirus. Virus Res. 147:166 -175.
60. Salem TZ, Zhang F, Xie Y, Thiem SM. 2011. Comprehensive analysis of host gene expression in Autographa californica nucleopolyhedrovirusinfected Spodoptera frugiperda cells. Virology 412:167-178.
61. Seshagiri S, Miller LK. 1997. Baculovirus inhibitors of apoptosis (IAPs) block activation of Sf-caspase-1. Proc. Natl. Acad. Sci. U. S. A. 94:13606- 13611.
62. Tweedie S, et al. 2009. FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 37:D555-D559.
63. Volkman LE. 2007. Baculovirus infectivity and the actin cytoskeleton. Curr. Drug Targets 8:1075-1083.
64. Wang R, et al. 2010. Proteomics of the Autographa californica nucleopolyhedrovirus budded virions. J. Virol. 84:7233-7242.
65. Xia K, Dong D, Han JD. 2006. IntNetDB v1.0: an integrated proteinprotein interaction network database generated by a probabilistic model. BMC Bioinformatics. 7:508. doi:10.1186/1471-2105-7-508.
66. Xia K, Fu Z, Hou L, Han JD. 2008. Impacts of protein-protein interaction domains on organism and network complexity. Genome Res. 18: 1500-1508.
67. Zhou R, et al. 2004. Heliocoverpa armigera single nucleocapsid nucleopolyhedrovirus induces Hz-AM1 cell cycle arrest at the G2 phase with accumulation of cyclin B1. Virus Res. 105:113-120.
68. Zou W, et al. 2006. Vitamin C inactivates the proteasome inhibitor PS-341 in human cancer cells. Clin. Cancer Res. 12:273-280.