Comprehensive analysis of host gene expression in Autographa californica nucleopolyhedrovirus-infected Spodoptera frugiperda cells

Virology

Volumn 412, Issue 1, 2011, Pages 167-178

  Salem, Tamer Z ^a,c   Zhang, Fengrui ^a   Xie, Yan ^a   Thiem, Suzanne M ^a,b  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b AGERI Agricultural Research Center ^*  (United States)

^c PLANT PATHOLOGY RESEARCH INSTITUTE   (Egypt)

Author keywords

AcMNPV; Baculovirus; DAVID; Host genes; Hsp 70; Microarray; QRT PCR; Sf21 cells; Transcriptome

Indexed keywords

HEAT SHOCK PROTEIN 70; TRANSCRIPTOME;

ANIMAL CELL; ARTICLE; AUTOGRAPHA CALIFORNICA; CELL CULTURE; CONTROLLED STUDY; DOWN REGULATION; ENDOPLASMIC RETICULUM; EXPRESSED SEQUENCE TAG; GENE CLUSTER; GENE EXPRESSION REGULATION; GENETIC CODE; GOLGI COMPLEX; HOST CELL; INSECT CELL; LEPIDOPTERA; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN TRANSPORT; REAL TIME POLYMERASE CHAIN REACTION; UPREGULATION; VIRUS INFECTION;

ANIMALS; CELL LINE; GENE EXPRESSION PROFILING; HOST-PATHOGEN INTERACTIONS; MICROARRAY ANALYSIS; NUCLEOPOLYHEDROVIRUS; SPODOPTERA; TIME FACTORS;

AUTOGRAPHA CALIFORNICA; AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; NUCLEOPOLYHEDROVIRUS; SPODOPTERA FRUGIPERDA;

EID: 79952537870     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2011.01.006     Document Type: Article

References (69)

1. Braunagel S.C., Parr R., Belyavskyi M., Summers M.D. Autographa californica nucleopolyhedrovirus infection results in Sf9 cell cycle arrest at G(2)/M phase. Virology 1998, 244(1):195-211.
2. Carstens E.B., Tjia S.T., Doerfler W. Infection of Spodoptera-Frugiperda cells with Autographa-Californica nuclear polyhedrosis-virus. 1. Synthesis of intracellular proteins after virus-infection. Virology 1979, 99(2):386-398.
3. Charlton C.A., Volkman L.E. Sequential rearrangement and nuclear polymerization of actin in Baculovirus-infected Spodoptera-Frugiperda cells. J. Virol. 1991, 65(3):1219-1227.
4. Cherezov V., Rosenbaum D.M., Hanson M.A., Rasmussen S.G.F., Thian F.S., Kobilka T.S., Choi H.J., Kuhn P., Weis W.I., Kobilka B.K., Stevens R.C. High-resolution crystal structure of an engineered human beta(2)-adrenergic G protein-coupled receptor. Science 2007, 318(5854):1258-1265.
5. Chien E.Y.T., Liu W., Zhao Q.A., Katritch V., Han G.W., Hanson M.A., Shi L., Newman A.H., Javitch J.A., Cherezov V., Stevens R.C. Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science 2010, 330(6007):1091-1095.
6. Dennis G., Sherman B.T., Hosack D.A., Yang J., Gao W., Lane H.C., Lempicki R.A. DAVID: database for annotation, visualization, and integrated discovery. Genome Biol. 2003, 4(9).
7. Gonzales E.B., Kawate T., Gouaux E. Pore architecture and ion sites in acid-sensing ion channels and P2X receptors. Nature 2009, 460(7255):599-U62.
8. Grisshammer R., Tate C.G. Overexpression of integral membrane-proteins for structural studies. Q. Rev. Biophys. 1995, 28(3):315-422.
9. Hanson M.A., Cherezov V., Griffith M.T., Roth C.B., Jaakola V.P., Chien E.Y.T., Velasquez J., Kuhn P., Stevens R.C. A specific cholesterol binding site is established by the 2.8 angstrom structure of the human beta(2)-adrenergic receptor. Structure 2008, 16(6):897-905.
10. Higgins M.K., Demir M., Tate C.G. Calnexin co-expression and the use of weaker promoters increase the expression of correctly assembled Shaker potassium channel in insect cells. Biochim. Biophys. Acta, Biomembr. 2003, 1610(1):124-132.
11. Hiroaki Y., Tani K., Kamegawa A., Gyobu N., Nishikawa K., Suzuki H., Walz T., Sasaki S., Mitsuoka K., Kimura K., Mizoguchi A., Fujiyoshi Y. Implications of the aquaporin-4 structure on array formation and cell adhesion. J. Mol. Biol. 2006, 355(4):628-639.
12. Hu Y.C., Yao K., Wu T.Y. Baculovirus as an expression and/or delivery vehicle for vaccine antigens. Expert Rev. Vaccin. 2008, 7(3):363-371.
13. Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4(1):44-57.
14. Ikeda M., Kobayashi M. Cell-cycle perturbation in Sf9 cells infected with Autographa californica nucleopolyhedrovirus. Virology 1999, 258(1):176-188.
15. International Committee on Taxonomy of Viruses, I Virus Taxonomy 2008 2008, Vol. 2009. International Committee on Taxonomy of Viruses (ICTV).
16. Iwanaga M., Shimada T., Kobayashi M., Kang W. Identification of differentially expressed host genes in Bombyx mori nucleopolyhedrovirus infected cells by using subtractive hybridization. Appl. Entomol. Zool. 2007, 42(1):151-159.
17. Jaakola V.P., Griffith M.T., Hanson M.A., Cherezov V., Chien E.Y.T., Lane J.R., Ijzerman A.P., Stevens R.C. The 2.6Angstrom crystal structure of a human A(2A) adenosine receptor bound to an antagonist. Science 2008, 322(5905):1211-1217.
18. Jarvis D.L. Baculovirus expression vectors. The Viruses 1997, 389-431. Plenum Press, New York. L.K. Miller (Ed.).
19. Jarvis D.L., Summers M.D. Glycosylation and secretion of human-tissue plasminogen-activator in recombinant baculovirus-infected insect cells. Mol. Cell. Biol. 1989, 9(1):214-223.
20. Jasti J., Furukawa H., Gonzales E.B., Gouaux E. Structure of acid-sensing ion channel 1 at 1.9A resolution and low pH. Nature 2007, 449(7160):316-323.
21. Jehle J.A., Blissard G.W., Bonning B.C., Cory J.S., Herniou E.A., Rohrmann G.F., Theilmann D.A., Thiem S.M., Vlak J.M. On the classification and nomenclature of baculoviruses: a proposal for revision. Arch. Virol. 2006, 151(7):1257-1266.
22. Kawate T., Michel J.C., Birdsong W.T., Gouaux E. Crystal structure of the ATP-gated P2X(4) ion channel in the closed state. Nature 2009, 460(7255):592-U55.
23. Kocks C., Cho J.H., Nehme N., Ulvila J., Pearson A.M., Meister M., Strom C., Conto S.L., Hetru C., Stuart L.M., Stehle T., Hoffmann J.A., Reichhart J.M., Ferrandon D., Ramet M., Ezekowitz R.A.B. Eater, a transmembrane protein mediating phagocytosis of bacterial pathogens in Drosophila. Cell 2005, 123(2):335-346.
24. Lavine M.D., Chen G., Strand M.R. Immune challenge differentially affects transcript abundance of three antimicrobial peptides in hemocytes from the moth Pseudoplusia includens. Insect Biochem. Mol. Biol. 2005, 35(12):1335-1346.
25. Lee H.H., Miller L.K. Isolation of genotypic variants of Autographa-Californica nuclear polyhedrosis-virus. J. Virol. 1978, 27(3):754-767.
26. Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(T) (-Delta Delta C) method. Methods 2001, 25(4):402-408.
27. Lyupina Y.V., Dmitrieva S.B., Timokhova A.V., Beljelarskaya S.N., Zatsepina O.G., Evgen'ev M.B., Mikhailov V.S. An important role of the heat shock response in infected cells for replication of baculoviruses. Virology 2010, 406(2):336-341.
28. Maeda S., Nakagawa S., Suga M., Yamashita E., Oshima A., Fujiyoshi Y., Tsukihara T. Structure of the connexin 26 gap junction channel at 3.5Angstrom resolution. Nature 2009, 458(7238):597-U61.
29. Makela A.R., Oker-Blom C. Baculovirus display: a multifunctional technology for gene delivery and eukaryotic library development. Adv. Virus Res. 2006, 68:91-112.
30. Maruniak J.E., Summers M.D. Autographa-Californica nuclear polyhedrosis-virus phosphoproteins and synthesis of intracellular proteins after virus-infection. Virology 1981, 109(1):25-34.
31. Massotte D. G protein-coupled receptor overexpression with the baculovirus-insect cell system: a tool for structural and functional studies. Biochim. Biophys. Acta, Biomembr. 2003, 1610(1):77-89.
32. Mayer M.P. Recruitment of Hsp70 chaperones: a crucial part of viral survival strategies. Reviews of Physiology Biochemistry and Pharmacology 2005, Vol. 153:1-46.
33. Negre V., Hotelier T., Volkoff A.N., Gimenez S., Cousserans F., Mita K., Sabau X., Rocher J., Lopez-Ferber M., d'Alencon E., Audant P., Sabourault C., Bidegainberry V., Hilliou F., Fournier P. SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera. BMC Bioinform. 2006, 7.
34. Nobiron I., O'Reilly D., Olzewski J.A. Autographa californica nucleopolyhedrovirus infection of Spodoptera frugiperda cells: a global analysis of host gene regulation during infection, using a differential display approach. J. Gen. Virol. 2003, 84:3029-3039.
35. O'Reilly D.R., Miller L.K., Luckow V. Baculovirus Expression Vectors: A Laboratory Manual 1992, W. H. Freeman and Company, New York.
36. Ochiai M., Ashida M. A pattern-recognition protein for beta-1,3-glucan-the binding domain and the cDNA cloning of beta-1,3-glucan recognition protein from the silkworm, Bombyx mori. J. Biol. Chem. 2000, 275(7):4995-5002.
37. Ooi B.G., Miller L.K. Regulation of host RNA levels during baculovirus infection. Virology 1988, 166(2):515-523.
38. Popham H.J.R., Grasela J.J., Goodman C.L., McIntosh A.H. Baculovirus infection influences host protein expression in two established insect cell lines. J. Insect Physiol. 2010, 56(9):1237-1245.
39. Quadt I., Mainz D., Mans R., Kremer A., Knebel-Morsdorf D. Baculovirus infection raises the level of TATA-binding protein that colocalizes with viral DNA replication sites. J. Virol. 2002, 76(21):11123-11127.
40. Rasmussen S.G.F., Choi H.J., Rosenbaum D.M., Kobilka T.S., Thian F.S., Edwards P.C., Burghammer M., Ratnala V.R.P., Sanishvili R., Fischetti R.F., Schertler G.F.X., Weis W.I., Kobilka B.K. Crystal structure of the human beta(2) adrenergic G-protein-coupled receptor. Nature 2007, 450(7168):383-387.
41. Rohrmann G.F. Baculovirus Molecular Biology. National Library of Medicine (US) 2008, National Center for Biotechnology Information, Bethesda, MD.
42. Roncarati R., Knebel-Morsdorf D. Identification of the early actin-rearrangement-inducing factor gene, arif-1, from Autographa californica multicapsid nuclear polyhedrosis virus. J. Virol. 1997, 71(10):7933-7941.
43. Sagisaka A., Fujita K., Nakamura Y., Ishibashi J., Noda H., Imanishi S., Mita K., Yamakawa M., Tanaka H. Genome-wide analysis of host gene expression in the silkworm cells infected with Bombyx mori nucleopolyhedrovirus. Virus Res. 2010, 147(2):166-175.
44. Sarramegna V., Talmont R., Demange P., Milon A. Heterologous expression of G-protein-coupled receptors: comparison of expression systems from the standpoint of large-scale production and purification. Cell. Mol. Life Sci. 2003, 60(8):1529-1546.
45. Schmittgen T.D., Livak K.J. Analyzing real-time PCR data by the comparative C-T method. Nat. Protoc. 2008, 3(6):1101-1108.
46. Schultz K.L.W., Friesen P.D. Baculovirus DNA replication-specific expression factors trigger apoptosis and shutoff of host protein synthesis during infection. J. Virol. 2009, 83(21):11123-11132.
47. Sidhu R.S., Lee J.Y., Yuan C., Smith W.L. Comparison of cyclooxygenase-1 crystal structures: cross-talk between monomers comprising cyclooxygenase-1 homodimers. Biochemistry 2010, 49(33):7069-7079.
48. Smith G.E., Fraser M.J., Summers M.D. Molecular engineering of the Autographa-Californica nuclear polyhedrosis-virus genome-deletion mutations within the polyhedrin gene. J. Virol. 1983, 46(2):584-593.
49. Sobolevsky A.I., Rosconi M.P., Gouaux E. X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Nature 2009, 462(7274):745-U66.
50. Stults J.T., Oconnell K.L., Garcia C., Wong S., Engel A.M., Garbers D.L., Lowe D.G. The disulfide linkages and glycosylation sites of the human natriuretic peptide receptor-C homodimer. Biochemistry 1994, 33(37):11372-11381.
51. Summers M.D. Milestones leading to the genetic engineering of baculoviruses as expression vector systems and viral pesticides. Insect Viruses Biotechnol. Appl. 2006, 68:3-73.
52. Summers M.D., Smith G.E. A manual of methods for baculovirus vectors and insect cell-culture procedures. Text. Agric. Exp. Stat. Bull. 1987, 1555:1-56.
53. Tani K., Mitsuma T., Hiroaki Y., Kamegawa A., Nishikawa K., Tanimura Y., Fujiyoshi Y. Mechanism of aquaporin-4's fast and highly selective water conduction and proton exclusion. J. Mol. Biol. 2009, 389(4):694-706.
54. Tate C.G., Haase J., Baker C., Boorsma M., Magnani F., Vallis Y., Williams D.C. Comparison of seven different heterologous protein expression systems for the production of the serotonin transporter. Biochim. Biophys. Acta, Biomembr. 2003, 1610(1):141-153.
55. Tate C.G., Whiteley E., Betenbaugh M.J. Molecular chaperones improve functional expression of the serotonin (5-hydroxytryptamine) transporter in insect cells. Biochem. Soc. Trans. 1999, 27:932-936.
56. Tate C.G., Whiteley E., Betenbaugh M.J. Molecular chaperones stimulate the functional expression of the cocaine-sensitive serotonin transporter. J. Biol. Chem. 1999, 274(25):17551-17558.
57. van Oers M.M. Vaccines for viral and parasitic diseases produced with baculovirus vectors. Adv. Virus Res. 2006, 68. 193-253.
58. van Oers M.M., Doitsidou M., Thomas A.A.M., de Maagd R.A., Vlak J.M. Translation of both 5' TOP and non-TOP host mRNAs continues into the late phase of Baculovirus infection. Insect Mol. Biol. 2003, 12(1):75-84.
59. van Oers M.M., Thomas A.A.M., Moormann R.J.M., Vlak J.M. Secretory pathway limits the enhanced expression of classical swine fever virus E2 glycoprotein in insect cells. J. Biotechnol. 2001, 86(1):31-38.
60. van Oers M.M., van der Veken L., Vlak J.M., Thomas A.A.M. Effect of baculovirus infection on the mRNA and protein levels of the Spodoptera frugiperda eukaryotic initiation factor 4E. Insect Mol. Biol. 2001, 10(3):255-264.
61. Vaughn J.L., Goodwin R.H., Tompkins G.J., McCawley P. Establishment of 2 cell lines from insect Spodoptera frugiperda (Lepidoptera-Noctuidae). Vitro J. Tissue Cult. Assoc. 1977, 13(4):213-217.
62. Volkman L.E., Zaal K.J.M. Autographa-Californica-M nuclear polyhedrosis-virus-microtubules and replication. Virology 1990, 175(1):292-302.
63. Warne T., Serrano-Vega M.J., Baker J.G., Moukhametzianov R., Edwards P.C., Henderson R., Leslie A.G.W., Tate C.G., Schertler G.F.X. Structure of a beta(1)-adrenergic G-protein-coupled receptor. Nature 2008, 454(7203):486-U2.
64. White S.H. The progress of membrane protein structure determination. Protein Sci. 2004, 13(7):1948-1949.
65. Wu B.L., Chien E.Y.T., Mol C.D., Fenalti G., Liu W., Katritch V., Abagyan R., Brooun A., Wells P., Bi F.C., Hamel D.J., Kuhn P., Handel T.M., Cherezov V., Stevens R.C. Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science 2010, 330(6007):1066-1071.
66. Wu Y.K., Yang Y., Ye S., Jiang Y.X. Structure of the gating ring from the human large-conductance Ca2+-gated K+ channel. Nature 2010, 466(7304):393-U148.
67. Yuan P., Leonetti M.D., Pico A.R., Hsiung Y.C., MacKinnon R. Structure of the human BK channel Ca2+-activation apparatus at 3.0Angstrom resolution. Science 2010, 329(5988):182-186.
68. Yun E.Y., Goo T.W., Kim S.W., Choi K.H., Hwang J.S., Kang S.W., Kwon O.Y. Changes in cellular secretory processing during baculovirus infection. Biotechnol. Lett. 2005, 27(14):1041-1045.
69. Zhang Z., Schwartz S., Wagner L., Miller W. A greedy algorithm for aligning DNA sequences. J. Comput. Biol. 2000, 7(1-2):203-214.