Genome-wide analysis of host gene expression in the silkworm cells infected with Bombyx mori nucleopolyhedrovirus

Virus Research

Volumn 147, Issue 2, 2010, Pages 166-175

  Sagisaka, Aki ^a   Fujita, Kosuke ^a   Nakamura, Yuki ^a,b   Ishibashi, Jun ^a   Noda, Hiroaki ^a,b   Imanishi, Shigeo ^a   Mita, Kazuei ^a   Yamakawa, Minoru ^a,c   Tanaka, Hiromitsu ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

Bombyx mori nucleopolyhedrovirus; Gene expression; Oligonucleotide microarray; Quantitative RT PCR; Silkworm

Indexed keywords

MESSENGER RNA; OLIGONUCLEOTIDE;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DOWN REGULATION; EMBRYO; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HOST PARASITE INTERACTION; INSECT CELL CULTURE; INSECT GENETICS; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SILKWORM; UNINDEXED SEQUENCE; UPREGULATION; VIRUS INFECTION; WORM INFECTION;

ANIMALS; BOMBYX; CELL LINE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HOST-PATHOGEN INTERACTIONS; NUCLEOPOLYHEDROVIRUS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

BOMBYX MORI; BOMBYX MORI NPV; NUCLEOPOLYHEDROVIRUS;

EID: 72949101431     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.10.015     Document Type: Article

References (60)

1. Abe T., Hemmi H., Miyamoto H., Moriishi K., Tamura S., Takaku H., Akira S., and Matsuura Y. Involvement of the Toll-like receptor 9 signaling pathway in the induction of innate immunity by baculovirus. J. Virol. 79 (2005) 2847-2858
2. Ayres M.D., Howard S.C., Kuzio J., Lopez-Ferber M., and Possee R.D. The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202 (1994) 586-605
3. Beniya H., Funk C.J., Rohrmann G.F., and Weaver R.F. Purification of a virus-induced RNA polymerase from Autographa californica nuclear polyhedrosis virus-infected Spodoptera frugiperda cells that accurately initiates late and very late transcription in vitro. Virology 216 (1996) 12-19
4. Berditchevski F. Complexes of tetraspanins with integrins: more than meets the eye. J. Cell Sci. 114 (2001) 4143-4151
5. Blissard G.W., and Rohrmann G.F. Baculovirus diversity and molecular biology. Annu. Rev. Entomol. 35 (1990) 127-155
6. Bosselut R., Duvall J.F., Gegonne A., Bailly M., Hemar A., Brady J., and Ghysdael J. The product of the c-ets-1 proto-oncogene and the related Ets2 protein act as transcriptional activators of the long terminal repeat of human T cell leukemia virus HTLV-1. EMBO J. 9 (1990) 3137-3144
7. Boucheix C., and Rubinstein E. Tetraspanins. Cell. Mol. Life Sci. 58 (2001) 1189-1205
8. Braunagel S.C., Parr R., Belyavskyi M., and Summers M.D. Autographa californica nucleopolyhedrovirus infection results in Sf9 cell cycle arrest at G2/M phase. Virology 244 (1998) 195-211
9. Carstens E.B., Tjia S.T., and Doerfler W. Infection of Spodoptera frugiperda cells with Autographa californica nuclear polyhedrosis virus I. Synthesis of intracellular proteins after virus infection. Virology 99 (1979) 386-398
10. Chung T.W., Lee Y.C., and Kim C.H. Hepatitis B viral HBx induces matrix metalloproteinase-9 gene expression through activation of ERK and PI-3K/AKT pathways: involvement of invasive potential. FASEB J. 18 (2004) 1123-1125
11. Chung T.W., Moon S.K., Lee Y.C., Kim J.G., Ko J.H., and Kim C.H. Enhanced expression of matrix metalloproteinase-9 by hepatitis B virus infection in liver cells. Arch. Biochem. Biophys. 408 (2002) 147-154
12. Costa F.F. Non-coding RNAs: new players in eukaryotic biology. Gene 357 (2005) 83-94
13. Fujita K., Sagisaka A., Tomimoto K., Ishibashi J., Imanishi S., Yamakawa M., and Tanaka H. DNA vector-based RNA interference in cell lines derived from Bombyx mori. Biosci. Biotechnol. Biochem. 73 (2009) 2026-2031
14. Gomi S., Majima K., and Maeda S. Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus. J. Gen. Virol. 80 (1999) 1323-1337
15. Han M., Yan W., Guo W., Xi D., Zhou Y., Li W., Gao S., Liu M., Levy G., Luo X., and Ning Q. Hepatitis B virus-induced hFGL2 transcription is dependent on c-Ets-2 and MAPK signal pathway. J. Biol. Chem. 283 (2008) 32715-32729
16. Hayakawa T., Rohrmann G.F., and Hashimoto Y. Patterns of genome organization and content in lepidopteran baculoviruses. Virology 278 (2000) 1-12
17. Hemler M.E. Tetraspanin proteins mediate cellular penetration, invasion, and fusion events and define a novel type of membrane microdomain. Annu. Rev. Cell Dev. Biol. 19 (2003) 397-422
18. Herniou E.A., Luque T., Chen X., Vlak J.M., Winstanley D., Cory J.S., and O'Reilly D.R. Use of whole genome sequence data to infer baculovirus phylogeny. J. Virol. 75 (2001) 8117-8126
19. Hirai M., Terenius O., Li W., and Faye I. Baculovirus and dsRNA induce Hemolin, but no antibacterial activity, in Antheraea pernyi. Insect Mol. Biol. 13 (2004) 399-405
20. Hu X., Chung A.Y., Wu I., Foldi J., Chen J., Ji J.D., Tateya T., Kang Y.J., Han J., Gessler M., Kageyama R., and Ivashkiv L.B. Integrated regulation of Toll-like receptor responses by Notch and interferon-γ pathways. Immunity 29 (2008) 691-703
21. Huang P.Y., Kang S.T., Chen W.Y., Hsu T.C., Lo C.F., Liu K.F., and Chen L.L. Identification of the small heat shock protein, HSP21, of shrimp Penaeus monodon and the gene expression of HSP21 is inactivated after white spot syndrome virus (WSSV) infection. Fish Shellfish Immunol. 25 (2008) 250-257
22. Huh N.E., and Weaver R.F. Identifying the RNA polymerases that synthesize specific transcripts of the Autographa californica nuclear polyhedrosis virus. J. Gen. Virol. 71 (1990) 195-201
23. Imanishi S., Akiduki G., and Haga A. Novel insect primary culture method by using newly developed media and extra cellular matrix. Proceeding of the 2002 Congress on In Vitro Biology 38 (2002) 16-A
24. Iwanaga M., Takaya K., Katsuma S., Ote M., Tanaka S., Kamita S.G., Kang W.K., Shimada T., and Kobayashi M. Expression profiling of baculovirus genes in permissive and non permissive cell lines. Biochem. Biophys. Res. Commun. 323 (2004) 599-614
25. Iwanaga M., Shimada T., Kobayashi T., and Kang W.K. Identification of differentially expressed host genes in Bombyx mori nucleopolyhedrovirus infected cells by using subtractive hybridization. Appl. Entomol. Zool. 42 (2007) 151-159
26. Jenner R.G., and Young R.A. Insights into host responses against pathogens from transcriptional profiling. Nat. Rev. Microbiol. 3 (2005) 281-294
27. Kost T.A., Condreay J.P., and Jarvis D.L. Baculovirus as versatile vectors for protein expression in insect and mammalian cells. Nat. Biotechnol. 23 (2005) 567-575
28. Llano E., Adam G., Pendas A.M., Quesada V., Sanchez L.M., Santamaria I., Noselli S., and Lopez-Otin C. Structural and enzymatic characterization of Drosophila Dm2-MMP, a membrane-bound matrix metalloproteinase with tissue-specific expression. J. Biol. Chem 277 (2002) 23321-23329
29. Llano E., Pendas A.M., Aza-Blanc P., Kornberg T.B., and Lopez-Otin C. Dm1-MMP, a matrix metalloproteinase from Drosophila with a potential role in extracellular matrix remodeling during neural development. J. Biol. Chem. 275 (2000) 35978-35985
30. Lin C.C., Yang C.F., Tu C.H., Huang C.G., Shih Y.T., Chuang C.K., and Chen W.J. A novel tetraspanin C189 upregulated in C6/36 mosquito cells following dengue 2 virus infection. Virus Res. 124 (2007) 176-183
31. McDonald D., Vodicka M.A., Lucero G., Svitkina T.M., Borisy G.G., Emerman M., and Hope T.J. Visualization of the intracellular behavior of HIV in living cells. J. Cell. Biol. 159 (2002) 441-452
32. Mehlen P., Schulze-Osthoff K., and Arrigo A.P. Small stress proteins as novel regulators of apoptosis. Heat shock protein 27 blocks Fas/APO-1- and staurosporine-induced cell death. J. Biol. Chem 271 (1996) 16510-16514
33. Mitsuhashi J., and Goodwin R.H. In: Mitsuhashi J. (Ed). Invertebrate Cell System Applications (1989), CRC Press, Boca Raton 167-182
34. Murphy C.I., Piwnica-Worms H., Grunwald S., Romanow W.G., Francis N., and Fan H.Y. Overview of the baculovirus expression system. Curr. Protoc. Mol. Biol. (2004) Unit 16.9
35. Nagase H., and Woessner Jr. J.F. Matrix metalloproteinases. J. Biol. Chem. 274 (1999) 21491-21494
36. Nakazawa H., Tsuneishi E., Ponnuvel K.M., Furukawa S., Asaoka A., Tanaka H., Ishibashi J., and Yamakawa M. Antiviral activity of a serine protease from the digestive juice of Bombyx mori larvae against nucleopolyhedrovirus. Virology 321 (2004) 154-162
37. Nobiron I., O'Reilly D.R., and Olszewski J.A. Autographa californica nucleopolyhedrovirus infection of Spodoptera frugiperda cells: a global analysis of host gene regulation during infection, using a differential display approach. J. Gen. Virol. 84 (2003) 3029-3039
38. Okano K., Shimada T., Mita K., and Maeda S. Comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells. Virology 282 (2001) 348-356
39. Ooi B.G., and Miller L.K. Regulation of host RNA levels during baculovirus infection. Virology 166 (1988) 515-523
40. Quadt I., Mainz D., Mans R., Kremer A., and Knebel-Morsdorf D. Baculovirus infection raises the level of TATA-binding protein that colocalizes with viral DNA replication sites. J. Virol. 76 (2002) 11123-11127
41. Page-McCaw A., Ewald A.J., and Werb Z. Matrix metalloproteinases and the regulation of tissue remodelling. Nat. Rev. Mol. Cell Biol. 8 (2007) 221-233
42. Ponnuvel K.M., Nakazawa H., Furukawa S., Asaoka A., Ishibashi J., Tanaka H., and Yamakawa M. A lipase isolated from the silkworm Bombyx mori shows antiviral activity against nucleopolyhedrovirus. J. Virol. 77 (2003) 10725-10729
43. Reed L.J., and Muench H. A simple method of estimating fifty percent endpoints. Am. J. Hyg. 27 (1938) 493-497
44. Reyes-Del Valle J., Chavez-Salinas S., Medina F., and Del Angel R.M. Heat shock protein 90 and heat shock protein 70 are components of dengue virus receptor complex in human cells. J. Virol. 79 (2005) 4557-4567
45. Roncarati R., and Knebel-Morsdorf D. Identification of the early actin-rearrangement-inducing factor gene, arif-1, from Autographa californica multicapsid nuclear polyhedrosis virus. J. Virol. 71 (1997) 7933-7941
46. Saha S., Murthy S., and Rangarajan P.N. Identification and characterization of a virus-inducible non-coding RNA in mouse brain. J. Gen. Virol. 87 (2006) 1991-1995
47. Slavicek J.M., Hayes-Plazolles N., and Kelly M.E. Identification of a Lymantria dispar nucleopolyhedrovirus isolate that does not accumulate few-polyhedra mutants during extended serial passage in cell culture. Biol. Control 22 (2001) 159-168
48. Spoden G., Freitag K., Husmann M., Boller K., Sapp M., Lambert C., and Florin L. Clathrin- and caveolin-independent entry of human papillomavirus type 16-involvement of tetraspanin-enriched microdomains (TEMs). PLoS One 3 (2008) e3313
49. Sternlicht M.D., and Werb Z. How matrix metalloproteinases regulate cell behavior. Annu. Rev. Cell Dev. Biol. 17 (2001) 463-516
50. Suzuki M.G., Terada T., Kobayashi M., and Shimada T. Diapause-associated transcription of BmEts, a gene encoding an ETS transcription factor homolog in Bombyx mori. Insect Biochem. Mol. Biol 29 (1999) 339-347
51. Tanaka H., Matsuki H., Furukawa S., Sagisaka A., Kotani E., Mori H., and Yamakawa M. Identification and functional analysis of Relish homologs in the silkworm, Bombyx mori. Biochim. Biophy. Acta 1769 (2007) 559-568
52. Tanaka H., Ishibashi J., Fujita K., Nakajima Y., Sagisaka A., Tomimoto K., Suzuki N., Yoshiyama M., Kaneko Y., Iwasaki T., Sunagawa T., Yamaji K., Asaoka A., Mita K., and Yamakawa M. A genome-wide analysis of genes and gene families involved in innate immunity of Bombyx mori. Insect Biochem. Mol. Biol. 38 (2008) 1097-1110
53. Tanaka H., Fujita K., Sagisaka A., Tomimoto K., Imanishi S., and Yamakawa M. shRNA expression plasmids generated by a novel method efficiently induce gene-specific knockdown in a silkworm cell line. Mol. Biotechnol. 41 (2009) 173-179
54. The International Silkworm Genome Consortium. The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem. Mol. Biol. 38 (2008) 1036-1045
55. Tomita S., Kanaya T., Kobayashi J., and Imanishi S. Isolation of p10 gene from Bombyx mori nuclear polyhedrosis virus and study of its promoter activity in recombinant baculovirus vector system. Cytotechnology 17 (1995) 65-70
56. Westermarck J., and Kahari V.M. Regulation of matrix metalloproteinase expression in tumor invasion. FASEB J. 13 (1999) 781-792
57. Xi Z., Ramirez J.L., and Dimopoulos G. The Aedes aegypti toll pathway controls dengue virus infection. PLoS Pathog. 4 (2008) e1000098
58. Yan C., and Boyd D.D. Regulation of matrix metalloproteinase gene expression. J. Cell. Physiol. 211 (2007) 19-26
59. Yang C.L., Stetler D.A., and Weaver R.F. Structural comparison of the Autographa californica nuclear polyhedrosis virus-induced RNA polymerase and the three nuclear RNA polymerases from the host, Spodoptera frugiperda. Virus Res. 20 (1991) 251-264
60. Zambon R.A., Nandakumar M., Vakharia V.N., and Wu L.P. The Toll pathway is important for an antiviral response in Drosophila. Proc. Natl. Acad. Sci. U.S.A. 102 (2005) 7257-7262