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Volumn 7, Issue , 2011, Pages

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

Author keywords

Ecosystems biology; environmental genomics; metagenomics; microbiology; molecular trait based ecology

Indexed keywords

ADAPTATION; ARTICLE; BIODIVERSITY; BIOGEOCHEMISTRY; CLIMATE; ENVIRONMENTAL TEMPERATURE; GEOGRAPHY; METAGENOMICS; METEOROLOGICAL PHENOMENA; MOLECULAR ECOLOGY; PREDICTION; PRIORITY JOURNAL; SEA; SUNLIGHT; ALGORITHM; ECOLOGY; ECOSYSTEM; GENE LOCUS; GENETICS; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; REGRESSION ANALYSIS; SPECIES DIFFERENCE; STATISTICAL ANALYSIS;

EID: 79952719497     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb.2011.6     Document Type: Article
Times cited : (156)

References (65)
  • 2
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • DOI 10.1038/nature04159, PII N04159
    • Arrigo KR (2005) Marine microorganisms and global nutrient cycles. Nature 437: 349-355 (Pubitemid 41613490)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 349-355
    • Arrigo, K.R.1
  • 5
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat SocB 57: 289-300
    • (1995) J Roy Stat SocB , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 63849269776 scopus 로고    scopus 로고
    • Prokaryotic genomes and diversity in surface ocean waters: Interrogating the global ocean sampling metagenome
    • Biers EJ, Sun S, Howard EC (2009) Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome. Appl Environ Microbiol 75: 2221-2229
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2221-2229
    • Biers, E.J.1    Sun, S.2    Howard, E.C.3
  • 8
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11: 265-270
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 9
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • DOI 10.1126/science.1123061
    • Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P (2006) Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283-1287 (Pubitemid 43334717)
    • (2006) Science , vol.311 , Issue.5765 , pp. 1283-1287
    • Ciccarelli, F.D.1    Doerks, T.2    Von Mering, C.3    Creevey, C.J.4    Snel, B.5    Bork, P.6
  • 13
    • 0032504117 scopus 로고    scopus 로고
    • Biogeochemical controls and feedbacks on ocean primary production
    • Falkowski PG, Barber RT, Smetacek VV (1998) Biogeochemical controls and feedbacks on ocean primary production. Science 281: 200-207
    • (1998) Science , vol.281 , pp. 200-207
    • Falkowski, P.G.1    Barber, R.T.2    Smetacek, V.V.3
  • 14
    • 0032503986 scopus 로고    scopus 로고
    • Primary production of the biosphere: Integrating terrestrial and oceanic components
    • DOI 10.1126/science.281.5374.237
    • Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary production of the biosphere: integrating terrestrial and oceanic components. Science 281: 237-240 (Pubitemid 28334501)
    • (1998) Science , vol.281 , Issue.5374 , pp. 237-240
    • Field, C.B.1    Behrenfeld, M.J.2    Randerson, J.T.3    Falkowski, P.4
  • 15
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • DOI 10.1126/science.1070710
    • Finlay BJ (2002) Global dispersal of free-living microbial eukaryote species. Science 296: 1061-1063 (Pubitemid 34517112)
    • (2002) Science , vol.296 , Issue.5570 , pp. 1061-1063
    • Finlay, B.J.1
  • 16
    • 59849086092 scopus 로고    scopus 로고
    • The bacterial species challenge: Making sense of genetic and ecological diversity
    • Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP (2009) The bacterial species challenge: making sense of genetic and ecological diversity Science 323: 741-746
    • (2009) Science , vol.323 , pp. 741-746
    • Fraser, C.1    Alm, E.J.2    Polz, M.F.3    Spratt, B.G.4    Hanage, W.P.5
  • 21
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee SC, Urban DL (2007) The ecodist package for dissimilarity-based analysis of ecological data. J Stat Software 22: i07
    • (2007) J Stat Software , vol.22
    • Goslee, S.C.1    Urban, D.L.2
  • 22
    • 44449118067 scopus 로고    scopus 로고
    • Microbial biogeography: From taxonomy to traits
    • DOI 10.1126/science.1153475
    • Green JL, Bohannan BJ, Whitaker RJ (2008) Microbial biogeography: from taxonomy to traits. Science 320: 1039-1043 (Pubitemid 351929519)
    • (2008) Science , vol.320 , Issue.5879 , pp. 1039-1043
    • Green, J.L.1    Bohannan, B.J.M.2    Whitaker, R.J.3
  • 23
    • 79952714157 scopus 로고    scopus 로고
    • United Nations Food and Agriculture Organisation. Rome Italy: Environment and Natural Resources Service
    • Grieser J (2002) Local Climate estimator 1.0. United Nations Food and Agriculture Organisation. Rome, Italy: Environment and Natural Resources Service
    • (2002) Local Climate Estimator 1.0.
    • Grieser, J.1
  • 25
    • 0000107975 scopus 로고
    • Relations between two sets of variants
    • Hotelling H (1936) Relations between two sets of variants. Biometrika 28: 321-377
    • (1936) Biometrika , vol.28 , pp. 321-377
    • Hotelling, H.1
  • 26
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • DOI 10.1126/science.1157890
    • Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085 (Pubitemid 351929550)
    • (2008) Science , vol.320 , Issue.5879 , pp. 1081-1085
    • Hunt, D.E.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 27
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • DOI 10.1101/gr.5969107
    • Huson DH, Auch AF, Qi J, Schuster SC (2007) MEGAN analysis of metagenomic data. GenomeRes 17: 377-386 (Pubitemid 46376747)
    • (2007) Genome Research , vol.17 , Issue.3 , pp. 377-386
    • Huson, D.H.1    Auch, A.F.2    Qi, J.3    Schuster, S.C.4
  • 28
    • 33645216333 scopus 로고    scopus 로고
    • Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
    • Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW (2006) Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311:1737-1740
    • (2006) Science , vol.311 , pp. 1737-1740
    • Johnson, Z.I.1    Zinser, E.R.2    Coe, A.3    McNulty, N.P.4    Woodward, E.M.5    Chisholm, S.W.6
  • 31
    • 0035819571 scopus 로고    scopus 로고
    • Unifying the relationships of species richness to productivity and disturbance
    • DOI 10.1098/rspb.2000.1384
    • Kondoh M (2001) Unifying the relationships of species richness to productivity and disturbance. Proc Biol Sci 268: 269-271 (Pubitemid 32154506)
    • (2001) Proceedings of the Royal Society B: Biological Sciences , vol.268 , Issue.1464 , pp. 269-271
    • Kondoh, M.1
  • 35
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • DOI 10.1093/bioinformatics/btl529
    • Letunic I, Bork P (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128 (Pubitemid 46017867)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 36
    • 79951741265 scopus 로고
    • Experimental simulation of winter anaerobiosis in a senescent lake
    • Lindeman RL (1942) Experimental simulation of winter anaerobiosis in a senescent lake. Ecology 23: 1-13
    • (1942) Ecology , vol.23 , pp. 1-13
    • Lindeman, R.L.1
  • 44
    • 35448969252 scopus 로고    scopus 로고
    • Molecular analysis of the distribution and phylogeny of dissimilatory adenosine-5'-phosphosulfate reductase-encoding genes (aprBA) among sulfur-oxidizing
    • DOI 10.1099/mic.0.2007/008250-0
    • Meyer B, Kuever J (2007) Molecular analysis of the distribution and phylogeny of dissimilatory adenosine-5'-phosphosulfate reductase-encoding genes (aprBA) among sulfur-oxidizing prokaryotes. Microbiology 153: 3478-3498 (Pubitemid 47629552)
    • (2007) Microbiology , vol.153 , Issue.10 , pp. 3478-3498
    • Meyer, B.1    Kuever, J.2
  • 47
    • 77954227260 scopus 로고    scopus 로고
    • Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families
    • Patel PV, Gianoulis TA, Bjornson RD, Yip KY, Engelman DM, Gerstein MB (2010) Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families. Genome Res 20: 960-971
    • (2010) Genome Res , vol.20 , pp. 960-971
    • Patel, P.V.1    Gianoulis, T.A.2    Bjornson, R.D.3    Yip, K.Y.4    Engelman, D.M.5    Gerstein, M.B.6
  • 50
    • 49649089054 scopus 로고    scopus 로고
    • Molecular eco-systems biology: Towards an understanding of community function
    • Raes J, Bork P (2008) Molecular eco-systems biology: towards an understanding of community function. NatRevMicrobiol 6: 693-699
    • (2008) NatRevMicrobiol , vol.6 , pp. 693-699
    • Raes, J.1    Bork, P.2
  • 51
    • 35748976529 scopus 로고    scopus 로고
    • Get the most out of your metagenome: Computational analysis of environmental sequence data
    • DOI 10.1016/j.mib.2007.09.001, PII S1369527407001233, Antimicrobials/Genomics
    • Raes J, Foerstner KU, Bork P (2007) Get the most out of your metagenome: computational analysis of environmental sequence data. Curr Opin Microbiol 10: 490-498 (Pubitemid 350052690)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.5 , pp. 490-498
    • Raes, J.1    Foerstner, K.U.2    Bork, P.3
  • 54
    • 33646748900 scopus 로고    scopus 로고
    • Dispersal limitations matter for microbial morphospecies
    • Telford RJ, Vandvik V, Birks HJ (2006) Dispersal limitations matter for microbial morphospecies. Science 312: 1015
    • (2006) Science , vol.312 , pp. 1015
    • Telford, R.J.1    Vandvik, V.2    Birks, H.J.3
  • 55
    • 0030881030 scopus 로고    scopus 로고
    • The influence of functional diversity and composition on ecosystem processes
    • DOI 10.1126/science.277.5330.1300
    • Tilman D, Knops J, Wedin D, Reich P, Ritchie M, Siemann E (1997) The influence of functional diversity and composition on ecosystem processes. Science 277: 1300-1302 (Pubitemid 27449081)
    • (1997) Science , vol.277 , Issue.5330 , pp. 1300-1302
    • Tilman, D.1    Knops, J.2    Wedin, D.3    Reich, P.4    Ritchie, M.5    Siemann, E.6
  • 56
    • 33644692952 scopus 로고    scopus 로고
    • Metagenomics: DNA sequencing of environmental samples
    • Tringe SG, Rubin EM (2005a) Metagenomics: DNA sequencing of environmental samples. Nat Rev Genet 6: 805-814
    • (2005) Nat Rev Genet , vol.6 , pp. 805-814
    • Tringe, S.G.1    Rubin, E.M.2
  • 58
    • 42049104578 scopus 로고    scopus 로고
    • SAR11 marine bacteria require exogenous reduced sulphur for growth
    • DOI 10.1038/nature06776, PII NATURE06776
    • Tripp HJ, Kitner JB, Schwalbach MS, Dacey JW, Wilhelm LJ, Giovannoni SJ (2008) SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature 452: 741-744 (Pubitemid 351521079)
    • (2008) Nature , vol.452 , Issue.7188 , pp. 741-744
    • Tripp, H.J.1    Kitner, J.B.2    Schwalbach, M.S.3    Dacey, J.W.H.4    Wilhelm, L.J.5    Giovannoni, S.J.6
  • 59
    • 0028975082 scopus 로고
    • Growth of Prochlorococcus, a photosynthetic prokaryote, in the Equatorial Pacific Ocean
    • Vaulot D, Marie D, Olson RJ, Chisholm SW (1995) Growth of Prochlorococcus, a photosynthetic prokaryote, in the Equatorial Pacific Ocean. Science 268: 1480-1482
    • (1995) Science , vol.268 , pp. 1480-1482
    • Vaulot, D.1    Marie, D.2    Olson, R.J.3    Chisholm, S.W.4
  • 60
    • 33847291893 scopus 로고    scopus 로고
    • Quantitative phylogenetic assessment of microbial communities in diverse environments
    • DOI 10.1126/science.1133420
    • von Mering C, Hugenholtz P, Raes J, Tringe SG, Doerks T, Jensen LJ, Ward N, Bork P (2007a) Quantitative phylogenetic assessment of microbial communities in diverse environments. Science 315: 1126-1130 (Pubitemid 46328023)
    • (2007) Science , vol.315 , Issue.5815 , pp. 1126-1130
    • Von Mering, C.1    Hugenholtz, P.2    Raes, J.3    Tringe, S.G.4    Doerks, T.5    Jensen, L.J.6    Ward, N.7    Bork, P.8
  • 63
    • 34548509019 scopus 로고    scopus 로고
    • Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes
    • DOI 10.1038/ismej.2007.63, PII ISMEJ200763
    • Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, Delong EF, Amann R, Glockner FO (2007) Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. ISMEJ 1: 419-435 (Pubitemid 47373248)
    • (2007) ISME Journal , vol.1 , Issue.5 , pp. 419-435
    • Woebken, D.1    Teeling, H.2    Wecker, P.3    Dumitriu, A.4    Kostadinov, I.5    Delong, E.F.6    Amann, R.7    Glockner, F.O.8


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