-
1
-
-
54249157493
-
Distinguishing between bioactive and modeled compound conformations through mining of emerging chemical patterns
-
Auer, J., & Bajorath, J. (2008). Distinguishing between bioactive and modeled compound conformations through mining of emerging chemical patterns. Journal of Chemical Information and Modeling, 48, 1747-1753.
-
(2008)
Journal of Chemical Information and Modeling
, vol.48
, pp. 1747-1753
-
-
Auer, J.1
Bajorath, J.2
-
3
-
-
0027310371
-
Generating optimal linear PLS estimations (GOLPE): An advanced chemometric tool for handling 3D-QSAR problems
-
Baroni, M., Constantino, G., Cruciani, G., Riganelli, D., Valigi, R., & Clementi, S. (1993). Generating optimal linear PLS Estimations (GOLPE):An advanced chemometric tool for handling 3D-QSAR problems. Quantitative Structure-Activity Relationships,12,9-20. (Pubitemid 23128716)
-
(1993)
Quantitative Structure-Activity Relationships
, vol.12
, Issue.1
, pp. 9-20
-
-
Baroni, M.1
Costantino, G.2
Cruciani, G.3
Riganelli, D.4
Valigi, R.5
Clementi, S.6
-
4
-
-
34250205540
-
SHOP: Scaffold HOPping by GRID-based similarity searches
-
DOI 10.1021/jm061259g
-
Bergmann, R., Linusson, A., & Zamora, I. (2007). SHOP: Scaffold HOPping by GRID-based similarity searches. Journal of Medicinal Chemistry, 50, 2708-2717. (Pubitemid 46896079)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.11
, pp. 2708-2717
-
-
Bergmann, R.1
Linusson, A.2
Zamora, I.3
-
5
-
-
84874763469
-
-
manuscript in preparation
-
Bernardes, L.S.C., Zani, C.L., Silva, C.H.T.P., da Silva, V.B., & Carvalho, I. (manuscript in preparation).
-
-
-
Bernardes, L.S.C.1
Zani, C.L.2
Silva, C.H.T.P.3
Da Silva, V.B.4
Carvalho, I.5
-
6
-
-
0033555451
-
Crystal structure of Trypanosoma cruzi trypanothione reductase in complex with trypanothione, and the structure-based discovery of new natural product inhibitors
-
DOI 10.1016/S0969-2126(99)80011-2
-
Bond, C.S., Zhang, Y., Berriman, M., Cunningham, M.L., Fairlamb, A.H., & Hunter, W.N. (1999). Crystal structure of trypanosoma cruzi trypanothione reductase in complex with trypanothione, and the structure-based discovery of new natural product inhibitors. Structure with Folding &Design, 7, 81-89. (Pubitemid 29159184)
-
(1999)
Structure
, vol.7
, Issue.1
, pp. 81-89
-
-
Bond, C.S.1
Zhang, Y.2
Berriman, M.3
Cunningham, M.L.4
Fairlamb, A.H.5
Hunter, W.N.6
-
7
-
-
34948858433
-
Influence of conformation on GRIND-based three-dimensional QSAR 3D-QSAR
-
Caron, G., & Ermondi, G. (2007). Influence of conformation on GRIND-based three-dimensional QSAR 3D-QSAR. Journal of Medicinal Chemistry, 50, 5039-5042.
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, pp. 5039-5042
-
-
Caron, G.1
Ermondi, G.2
-
8
-
-
15844366918
-
Generation of multiple pharmacophore hypotheses using multiobjective optimisation techniques
-
DOI 10.1007/s10822-004-5523-7
-
Cottrell, S.J., Gillet, V.J., Taylor, R., & Wilton, D.J. (2004). Generation of multiple pharmacophore hypotheses using multiobjective optimisation techniques. Journal of Computer- Aided Molecular Design, 18, 665-682. (Pubitemid 40425038)
-
(2004)
Journal of Computer-Aided Molecular Design
, vol.18
, Issue.11
, pp. 665-682
-
-
Cottrell, S.J.1
Gillet, V.J.2
Taylor, R.3
Wilton, D.J.4
-
9
-
-
0037142339
-
Suitability of molecular descriptors for database mining. A comparative analysis
-
DOI 10.1021/jm0011326
-
Cruciani, G., Pastor, M., & Mannhold, R. (2002). Suitability of molecular descriptors for database mining. A comparative analysis. Journal of Medicinal Chemistry, 45, 2685-2694. (Pubitemid 34627641)
-
(2002)
Journal of Medicinal Chemistry
, vol.45
, Issue.13
, pp. 2685-2694
-
-
Cruciani, G.1
Pastor, M.2
Mannhold, R.3
-
10
-
-
0036022976
-
Can we separate active from inactive conformations?
-
DOI 10.1023/A:1016320106741
-
Diller, D.J., & Merz, K.M.Jr. (2002). Can we separate active from inactive conformations? Journal of Computer-Aided Molecular Design, 16, 105-112. (Pubitemid 34855037)
-
(2002)
Journal of Computer-Aided Molecular Design
, vol.16
, Issue.2
, pp. 105-112
-
-
Diller, D.J.1
Merz Jr., K.M.2
-
11
-
-
54249093364
-
Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in molecular interaction fields
-
Duran, A., Comesaña, G., & Pastor, M. (2008). Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in molecular interaction fields. Journal of Chemical Information and Modeling, 48, 1813-1823.
-
(2008)
Journal of Chemical Information and Modeling
, vol.48
, pp. 1813-1823
-
-
Duran, A.1
Comesaña, G.2
Pastor, M.3
-
12
-
-
70349919668
-
Suitability of GRIND-based principal properties for the description of molecular similarity and ligand-based virtual screening
-
Duran, A., Zamora, I., & Pastor, M. (2009). Suitability of GRIND-based principal properties for the description of molecular similarity and ligand-based virtual screening. Journal of Chemical Information and Modeling, 49, 2129-2138.
-
(2009)
Journal of Chemical Information and Modeling
, vol.49
, pp. 2129-2138
-
-
Duran, A.1
Zamora, I.2
Pastor, M.3
-
13
-
-
0021871375
-
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
-
Goodford, P.J. (1985). A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. Journal of Medicinal Chemistry, 28, 849-857.
-
(1985)
Journal of Medicinal Chemistry
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
14
-
-
78650961938
-
Design of New chemotherapeutics against the deadly anthrax disease. Docking and molecular dynamics studies of inhibitors containing pyrrolidine and riboamidrazone rings on Nucleoside Hydrolase from bacillus anthracis
-
Guimarães, A.P., Oliveira, A.A., da Cunha, E.F.F., Ramalho, T.C., & França, T.C.C. (2011). Design of New chemotherapeutics against the deadly anthrax disease. docking and molecular dynamics studies of inhibitors containing pyrrolidine and riboamidrazone rings on Nucleoside Hydrolase from bacillus anthracis. Journal of Biomolecular Structure & Dynamics, 28, 455-469.
-
(2011)
Journal of Biomolecular Structure & Dynamics
, vol.28
, pp. 455-469
-
-
Guimarães, A.P.1
Oliveira, A.A.2
Da Cunha, E.F.F.3
Ramalho, T.C.4
França, T.C.C.5
-
15
-
-
67650429970
-
Computer-aided drug design of novel PLA2 inhibitor candidates for treatment of snake bite
-
Hage-Melim, L.I.S., Silva, C.H.T.P., Semighini, E.P., Taft, C.A., & Sampaio, S.V. (2009). Computer-aided drug design of novel PLA2 inhibitor candidates for treatment of snake bite. Journal of Biomolecular Structure & Dynamics, 27, 27-36.
-
(2009)
Journal of Biomolecular Structure & Dynamics
, vol.27
, pp. 27-36
-
-
Hage-Melim, L.I.S.1
Silva, C.H.T.P.2
Semighini, E.P.3
Taft, C.A.4
Sampaio, S.V.5
-
16
-
-
0026760326
-
Active site of trypanothione reductase: A target for rational drug design
-
Hunter, W.N., Bailey, S., Habash, J., Harrop, S.J., Helliwell, J.R., Aboagye-Kwarteng, T., ... Fairlamb, A.H. (1992). Active site of trypanothione reductase: A target for rational drug design. Journal of Molecular Biology, 227, 322-333.
-
(1992)
Journal of Molecular Biology
, vol.227
, pp. 322-333
-
-
Hunter, W.N.1
Bailey, S.2
Habash, J.3
Harrop, S.J.4
Helliwell, J.R.5
Aboagye-Kwarteng, T.6
Fairlamb, A.H.7
-
17
-
-
70350572363
-
Assaying phenothiazine derivatives as trypanothione reductase and glutathione reductase inhibitors by theoretical docking and Molecular Dynamics studies
-
Iribarne, F., Paulino, M., Aguilera, S., & Tapia, O. (2009). Assaying phenothiazine derivatives as trypanothione reductase and glutathione reductase inhibitors by theoretical docking and Molecular Dynamics studies. Journal of Molecular Graphics and Modelling, 28, 371-381.
-
(2009)
Journal of Molecular Graphics and Modelling
, vol.28
, pp. 371-381
-
-
Iribarne, F.1
Paulino, M.2
Aguilera, S.3
Tapia, O.4
-
18
-
-
0030057025
-
Crystal structure of the Trypanosoma cruzi trypanothione reductase mepacrine complex
-
DOI 10.1002/(SICI)1097-0134(199601)24:1<73::AID-PROT5>3.0.CO;2-P
-
Jacoby, E.M., Schlichting, I., Lantwin, C.B., Kabsch, W., &Krauth-Siegel, R.L. (1996). Crystal structure of the trypanosoma cruzi trypanothione reductase.mepacrine complex. Proteins, 24, 73-80. (Pubitemid 26044596)
-
(1996)
Proteins: Structure, Function and Genetics
, vol.24
, Issue.1
, pp. 73-80
-
-
Jacoby, E.M.1
Schlichting, I.2
Lantwin, C.B.3
Kabsch, W.4
Krauth-Siegel, R.L.5
-
19
-
-
42949105619
-
Inhibition of immune complex-mediated neutrophil oxidative metabolism: A pharmacophore model for 3-phenylcoumarin derivatives using GRIND-based 3D-QSAR and 2D-QSAR procedures
-
DOI 10.1016/j.ejmech.2007.07.003, PII S0223523407002772
-
Kabeya, L.M., Silva, C.H.T.P., Konashiro, A., Campos, J.M., Azzolini, A.E.C.S., Polizello, A.C.M., ... Valim, Y.M.L. (2008). Inhibition of immune complex-mediated neutrophil oxidative metabolism: A pharmacophore model for 3-phenylcoumarin derivatives using GRIND-based 3D-QSAR and 2D-QSAR procedures. European Journal of Medicinal Chemistry, 42, 996-1007. (Pubitemid 351615238)
-
(2008)
European Journal of Medicinal Chemistry
, vol.43
, Issue.5
, pp. 996-1007
-
-
Kabeya, L.M.1
Da, S.C.H.T.P.2
Kanashiro, A.3
Campos, J.M.4
Azzolini, A.E.C.S.5
Polizello, A.C.M.6
Pupo, M.T.7
Lucisano-Valim, Y.M.8
-
20
-
-
0028057659
-
The structure of Trypanosoma cruzi trypanothione reductase in the oxidized and NADPH reduced state
-
Lantwin, C.B., Schlichting, I., Kabsch, W., Pai, E.F., & Krauth- Siegel, R.L. (1994). The structure of trypanosoma cruzi trypanothione reductase in the oxidized and NADPH reduced state. Proteins, 18, 161-173. (Pubitemid 24055078)
-
(1994)
Proteins: Structure, Function and Genetics
, vol.18
, Issue.2
, pp. 161-173
-
-
Lantwin, C.B.1
Schlichting, I.2
Kabsch, W.3
Pai, E.F.4
Krauth-Siegel, R.L.5
-
21
-
-
18744394070
-
Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
-
DOI 10.1093/bioinformatics/bti315
-
Laurie, A.T., & Jackson, R.M. (2005). Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites. Bioinformatics, 21, 1908-1916. (Pubitemid 40668026)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1908-1916
-
-
Laurie, A.T.R.1
Jackson, R.M.2
-
22
-
-
33846933089
-
High-throughput screening affords novel and selective trypanothione reductase inhibitors with anti-trypanosomal activity
-
DOI 10.1016/j.bmcl.2006.12.016, PII S0960894X0601403X
-
Martyn, D.C., Jones, D.C., Fairlamb, A.H., & Clardy, J. (2007). High-throughput screening affords novel and selective trypanothione reductase inhibitors with anti-trypanosomal activity. Bioorganic & Medicinal Chemistry Letters, 17, 1280-1283. (Pubitemid 46240853)
-
(2007)
Bioorganic and Medicinal Chemistry Letters
, vol.17
, Issue.5
, pp. 1280-1283
-
-
Martyn, D.C.1
Jones, D.C.2
Fairlamb, A.H.3
Clardy, J.4
-
23
-
-
0034710718
-
GRid-INdependent descriptors (GRIND): A novel class of alignment-independent three-dimensional molecular descriptors
-
Pastor, M., Cruciani, G., McLay, I., Pickett, S., & Clementi, S. (2000). GRid-INdependent descriptors (GRIND): A novel class of alignment-independent three-dimensional molecular descriptors. Journal of Medicinal Chemistry, 43, 3233-3243.
-
(2000)
Journal of Medicinal Chemistry
, vol.43
, pp. 3233-3243
-
-
Pastor, M.1
Cruciani, G.2
McLay, I.3
Pickett, S.4
Clementi, S.5
-
24
-
-
2342586724
-
Conformational Analysis of Drug-Like Molecules Bound to Proteins: An Extensive Study of Ligand Reorganization upon Binding
-
DOI 10.1021/jm030563w
-
Perola, E., & Charifson, P.S. (2004). Conformational analysis of drug-like molecules bound to proteins: An extensive study of ligand reorganization upon binding. Journal of Medicinal Chemistry, 47, 2499-2510. (Pubitemid 38580088)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.10
, pp. 2499-2510
-
-
Perola, E.1
Charifson, P.S.2
-
25
-
-
79958705639
-
Molecular modeling of mycobacterium tuberculosis dUTpase: Docking and catalytic mechanism studies
-
Ramalho, T.C., Caetano, M.S., Josa, D., Luz, G.P., Freitas, E.A., & da Cunha, E.F.F. (2011). Molecular modeling of mycobacterium tuberculosis dUTpase: Docking and catalytic mechanism studies. Journal of Biomolecular Structure and Dynamics, 28, 907-917.
-
(2011)
Journal of Biomolecular Structure and Dynamics
, vol.28
, pp. 907-917
-
-
Ramalho, T.C.1
Caetano, M.S.2
Josa, D.3
Luz, G.P.4
Freitas, E.A.5
Da Cunha, E.F.F.6
-
26
-
-
3142719178
-
Two interacting binding sites for quinacrine derivatives in the active site of trypanothione reductase: A template for drug design
-
DOI 10.1074/jbc.M403187200
-
Saravanamuthu, A., Vickers, T.J., Bond, C.S., Peterson, M.R., Hunter, W.N., & Fairlamb, A.H. (2004). Two interacting binding sites for quinacrine derivatives in the active site of trypanothione reductase: A template for drug design. Journal of Biological Chemistry, 279, 29493-29500. (Pubitemid 38915829)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.28
, pp. 29493-29500
-
-
Saravanamuthu, A.1
Vickers, T.J.2
Bond, C.S.3
Peterson, M.R.4
Hunter, W.N.5
Fairlamb, A.H.6
-
27
-
-
79952208889
-
Using computer-aided drug design and medicinal chemistry strategies in the fight against diabetes
-
Semighini, E.P., Resende, J., Andrade, P., Morais, P.A.B., Carvalho, I., Taft, C.A., & Silva, C.H.T.P. (2011). Using computer-aided drug design and medicinal chemistry strategies in the fight against diabetes. Journal of Biomolecular Structure & Dynamics, 28, 787-796.
-
(2011)
Journal of Biomolecular Structure & Dynamics
, vol.28
, pp. 787-796
-
-
Semighini, E.P.1
Resende, J.2
Andrade, P.3
Morais, P.A.B.4
Carvalho, I.5
Taft, C.A.6
Silva, C.H.T.P.7
-
28
-
-
71049142458
-
-
Spartan '06 full. USA: Wavefunction, Inc.
-
Spartan '06 full. (2006). Tutorial and user's guide. USA: Wavefunction, Inc.
-
(2006)
Tutorial and User's Guide
-
-
-
29
-
-
58149196803
-
Diaryl sulfide-based inhibitors of trypanothione reductase: Inhibition potency, revised binding mode and antiprotozoal activities
-
Stump, B., Eberle, C., Kaiser, M., Brun, R., Krauth-Siegel, R.L., & Diederich, F. (2008). Diaryl sulfide-based inhibitors of trypanothione reductase: Inhibition potency, revised binding mode and antiprotozoal activities. Organic & Biomolecular Chemistry, 6, 3935-3947.
-
(2008)
Organic & Biomolecular Chemistry
, vol.6
, pp. 3935-3947
-
-
Stump, B.1
Eberle, C.2
Kaiser, M.3
Brun, R.4
Krauth-Siegel, R.L.5
Diederich, F.6
-
30
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
DOI 10.1002/prot.10465
-
Verdonk, M.L., Cole, J.C., Hartshorn, M.J., Mulrray, C.W., &Taylor, R.D. (2003). Improved protein-ligand docking using GOLD. Proteins: Structure, Functions and Genetics, 52, 609-623. (Pubitemid 37034158)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.4
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
31
-
-
84874769343
-
-
World Health Organization. (2002). http://www.who.int/tdr/publications/ tdr-research-publications/reporte-enfermedad-chagas/pdf/swg-chagas.pdf.
-
(2002)
-
-
|