Atomic force microscopy with nanoscale cantilevers resolves different structural conformations of the DNA double helix

Nano Letters

Volumn 12, Issue 7, 2012, Pages 3846-3850

  Leung, Carl ^a   Bestembayeva, Aizhan ^a   Thorogate, Richard ^a   Stinson, Jake ^a   Pyne, Alice ^a,b   Marcovich, Christian ^a,c   Yang, Jinling ^d   Drechsler, Ute ^e   Despont, Michel ^e   Jankowski, Tilo ^f   Tschöpe, Martin ^f   Hoogenboom, Bart W ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b NATIONAL PHYSICAL LABORATORY   (United Kingdom)

^c ECOLE POLYTECHNIQUE   (France)

^d INSTITUTE OF SEMICONDUCTORS   (China)

^e IBM RESEARCH ZURICH   (Switzerland)

^f JPK Instruments AG   (Germany)

Author keywords

Atomic force microscopy; DNA; frequency and phase modulation; molecular resolution; nanoscale cantilevers

Indexed keywords

AFM CANTILEVERS; BIO-MOLECULAR; DNA DOUBLE HELICES; INVASINESS; MOLECULAR RESOLUTION; NANO SCALE; NANOSCALE CANTILEVERS; POLYNUCLEOTIDES; SINGLE MOLECULE; SPATIAL RESOLUTION; STRUCTURAL CONFORMATIONS; STRUCTURAL VARIABILITY;

ATOMIC FORCE MICROSCOPY; DNA; NANOCANTILEVERS; NANOTECHNOLOGY; PHASE MODULATION;

CONFORMATIONS;

DNA; NANOMATERIAL;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMISTRY; CONFORMATION; PLASMID;

DNA; MICROSCOPY, ATOMIC FORCE; NANOSTRUCTURES; NUCLEIC ACID CONFORMATION; PLASMIDS;

EID: 84863840199     PISSN: 15306984     EISSN: 15306992     Source Type: Journal    
DOI: 10.1021/nl301857p     Document Type: Article

References (35)

1. Fukuma, T.; Kobayashi, K.; Matsushige, K.; Yamada, H. Appl. Phys. Lett. 2005, 87, 034101
2. Hoogenboom, B. W.; Hug, H. J.; Pellmont, Y.; Martin, S.; Frederix, P. L. T. M.; Fotiadis, D.; Engel, A. Appl. Phys. Lett. 2006, 88, 193109
3. Suzuki, K.; Kitamura, S.; Tanaka, S.; Kobayashi, K.; Yamada, H. Jpn. J. Appl. Phys. 2010, 49, 08LB12
4. Voïtchovsky, K.; Kuna, J. J.; Antoranz Contera, S.; Tosatti, E.; Stellacci, F. Nat. Nanotechnol. 2010, 5, 401-405
5. Martinez-Martin, D.; Herruzo, E. T.; Dietz, C.; Gomez-Herrero, J.; Garcia, R. Phys. Rev. Lett. 2011, 106, 198101
6. Müller, D. J.; Engel, A. Nat. Protoc. 2007, 2, 2191-2197
7. Müller, D. J.; Dufrêne, Y. Nat. Nanotechnol. 2008, 3, 261-269
8. Kodera, N.; Yamamoto, D.; Ishikawa, R.; Ando, T. Nature 2010, 468, 72-76
9. Hansma, H. G. Annu. Rev. Phys. Chem. 2001, 52, 71-92
10. Han, W.; Lindsay, S. M.; Jing, T. Appl. Phys. Lett. 1996, 69, 4111-4113
11. Radcliff, G. C.; Erie, D. A.; Superfine, R. Appl. Phys. Lett. 1998, 72, 1911-1913
12. Tamayo, J.; Humphris, A. D. L.; Miles, M. J. Appl. Phys. Lett. 2000, 77, 582-584
13. Preiner, J.; Tang, J.; Pastushenko, V.; Hinterdorfer, P. Phys. Rev. Lett. 2007, 99, 046102
14. Garcia, R.; Herruzo, E. T. Nat. Nanotechnol. 2012, 7, 217-226
15. Viani, M. B.; Pietrasanta, L. I.; Thompson, J. B.; Chand, A.; Gesehuber, I. C.; Kindt, J. H.; Richter, M.; Hansma, H. G.; Hansma, P. K. Nat. Struct. Biol. 2000, 7, 644-647
16. Yang, J. L.; Despont, M.; Drechsler, U.; Hoogenboom, B. W.; Frederix, P. L. T. M.; Martin, S.; Engel, A.; Vettiger, P.; Hug, H. J. Appl. Phys. Lett. 2005, 86, 134101
17. Fantner, G. E.; Barbero, R. J.; Gray, D. S.; Belcher, A. M. Nat. Nanotechnol. 2010, 5, 280-285
18. Hoogenboom, B. W.; Suda, K.; Engel, A.; Fotiadis, D. J. Mol. Biol. 2007, 370, 246-255
19. Fukuma, T.; Higgins, M. J.; Jarvis, S. P. Phys. Rev. Lett. 2007, 98, 106101
20. Sader, J. E.; Jarvis, S. P. Appl. Phys. Lett. 2004, 84, 1801-1803
21. Lyubchenko, Y. L.; Shlyakhtenko, L. S.; Ando, T. Methods 2011, 54, 274-283
22. Sushko, M. L.; Shluger, A. L.; Rivetti, C. Langmuir 2006, 22, 7678-7688
23. Hoogenboom, B. W.; Frederix, P. L. T. M.; Yang, J. L.; Martin, S.; Pellmont, Y.; Steinacher, M.; Zäch, S.; Langenbach, E.; Heimbeck, H.-J.; Engel, A.; Hug, H. J. Appl. Phys. Lett. 2005, 86, 074101
24. Weld, D. M.; Kapitulnik, A. Appl. Phys. Lett. 2006, 89, 164102
25. Sugawara, Y.; Kobayashi, N.; Kawakami, M.; Li, Y. J.; Naitoh, Y.; Kageshima, M. Appl. Phys. Lett. 2007, 90, 194104
26. Fukuma, T.; Onishi, K.; Kobayashi, N.; Matsuki, A.; Asakawa, H. Nanotechnology 2012, 23, 135706
27. Green, C. P.; Sader, J. E. J. Appl. Phys. 2005, 98, 114913
28. Li, M.; Tang, H. X.; Roukes, M. L. Nat. Nanotechnol. 2007, 2, 114-120
29. Bryant, Z.; Stone, M. D.; Gore, J.; Smith, S. B.; Cozzarelli, N. R.; Bustamante, C. Nature 2003, 424, 338-341
30. Sheinin, M. Y.; Forth, S.; Marko, J. F.; Wang, M. D. Phys. Rev. Lett. 2011, 107, 108102
31. Mou, J.; Czajkowsky, D. M.; Zhang, Y.; Shao, Z. FEBS Lett. 1995, 371, 279-282
32. Maaloum, M.; Bleker, A.-F.; Muller, P. Phys. Rev. E 2011, 83, 031903
33. Tiner, W.; Potaman, V.; Lyubchenko, R. S. Y. J. Mol. Biol. 2001, 314, 353-357
34. Rich, A.; Zhang, S. Nat. Rev. Gen. 2003, 4, 566-572
35. Sontza, P. A.; Muia, T. P.; Fuss, J. O.; Tainer, J. A.; Barton, J. K. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 1856-1861