Current advances in proteomic analysis of (fatty) liver

Journal of Proteomics

Volumn 75, Issue 14, 2012, Pages 4290-4295

  Molette, C ^a,b   Theron L ^a,b   Marty Gasset, N ^a,b   Fernandez, X ^a,b   Remignon H ^a,b  

^a UNIVERSITÉ DE TOULOUSE   (France)

^b CEMAGREF   (France)

Author keywords

Bird; Liver; Mammalian; Proteome map; Two dimensional electrophoresis; Waterfowl

Indexed keywords

LIVER PROTEIN; PROTEOME;

BODY FAT; BREED DIFFERENCE; CHICKEN; DAIRY CATTLE; DUCKS AND GEESE; EMBRYO DEVELOPMENT; FATTY LIVER; HUMAN; LIPOGENESIS; LIQUID CHROMATOGRAPHY; LIVER DEVELOPMENT; MOLECULAR EVOLUTION; NONHUMAN; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; REVIEW; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; DUCKS; FATTY LIVER; GENE EXPRESSION PROFILING; POULTRY DISEASES; PROTEOME; PROTEOMICS;

ANATIDAE; ANIMALIA; AVES; MAMMALIA;

EID: 84863834585     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.04.041     Document Type: Review

References (41)

1. Arias L.M., Boyer J., Jakobi W.B., Fausto N., Schachter D. The liver: biology, and pathobiology 1994, Lippincott Williams and Wilkins, Philadelphia.
2. Talamo F., D'Ambrosio C., Arena S., Del Vecchio P., Ledda L., Zehender G., et al. Proteins from bovine tissues and biological fluids: defining a reference electrophoresis map for liver, kidney, muscle, plasma and red blood cells. Proteomics 2003, 3:440-460.
3. Ying W., Jiang Y., Guo L., Hao Y., Zhang Y., Wu S., et al. A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology. Mol Cell Proteomics 2006, 5:1703-1707.
4. D'Ambrosio C., Arena S., Talamo F., Ledda L., Renzone G., Ferrara L., et al. Comparative proteomic analysis of mammalian animal tissues and body fluids: bovine proteome database. J Chromatogr B 2005, 157-168.
5. Golovan S.P., Hakinav H.A., Verschoor C.P., Walters S., Gadish M., Elsik C., et al. Analysis of Sus scrofa liver proteome and identification of proteins differentially expressed between genders, and conventional and genetically enhanced lines. Comp Biochem Physiol D 2008, 3:234-242.
6. Tsujita T., Kang D., Moon M.H., Ohno N., Inoue T., Matsumoto M., et al. Large-scale identification by shotgun proteomics of proteins expressed in porcine liver and salivary gland. Zoolog Sci 2008, 25:129-136.
7. Lunney J.K. Advances in swine biomedical model genomics. Int J Biol Sci 2007, 3:179-184.
8. Kang D., Nam H., Kim Y., Moon M.H. Dual-purpose sample trap for on-line strong cation-exchange chromatography/reversed-phase liquid chromatography/tandem mass spectrometry for shotgun proteomics. Application to the human Jurkat T-cell proteome. J Chromatogr A 2005, 1070:193-200.
9. Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169.
10. Lin Z.H., Wang Y.F., Saral A., Yasue H. Swine catalase deduced from cDNA and localization of the catalase gene on swine chromosome 2p16-p15. Biochem Genet 1997, 35:297-302.
11. Baranova J., Anzenbacherova E., Anzenbacher P., Soucek P. Minipig cytochrome P450 2E1: comparison with human enzyme. Drug Metab Dispos 2005, 33:863-865.
12. Koger J.B., Jones E.E. Nucleotide sequence of porcine OTCase cDNA. J Anim Sci 1997, 75:3368.
13. Martens L., Hermjakob H., Jones P., Adamski M., Taylor C., States D., et al. PRIDE: the proteomics identifications database. Proteomics 2005, 5:3537-3545.
14. Foster L.J., de Hoog C.L., Zhang Y., Zhang Y., Xie X., Mootha V.K., et al. A mammalian organelle map by protein correlation profiling. Cell 2006, 125:187-199.
15. Jianzhen H., Haitian M., Liming Y., Sixiang Z. Developmental changes of protein profiles in the embryonic Sanchuang chicken liver. J Vet Med A 2007, 54:464-469.
16. Lee K.Y., Jung K.C., Jang B.G., Choi K.D., Jeon J.T., Lee J.H. Identification of differentially expressed proteins at four growing stages in chicken liver. Asian Australas J Anim Sci 2008, 21(10):1383-1388.
17. Izumi T., Yamaguchi M. Overexpression of regucalcin suppresses cell death in cloned rat hepatoma H4-II-E cell induced by tumor necrosis factor-alpha or thapsigargin. J Cell Biochem 2004, 92:296-306.
18. Chapman S.C., Brown R., Lees L., Schoenwolf C., Lumsden A. Expression analysis of chick Wnt and frizzled genes and selected inhibitors in early chick patterning. Dev Dynam 2004, 229:668-676.
19. Hussain S.Z., Tan X., Micsenyi A., Sneddon T., Michalopoulos G.K., Monga S.P. Wnt impacts growth and differentiation in ex vivo liver development. Exp Cell Res 2004, 292:157-169.
20. Zhao S., Zou H.M.S., Chen W., Zhao R. Hepatic lipogenesis in broiler chickens with different fat deposition during embryonic development. J Vet Med A 2007, 54:1-6.
21. Drackley J.K. Biology of the dairy cows during the transition period: the final frontier?. J Dairy Sci 1999, 82:2259-2273.
22. Loor J.J., Dann H.M., Everts R.E., Oliveira R., Green C.A., Guretzky N.A., et al. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiol Genomics 2005, 23:217-226.
23. Loor J.J., Everts R.E., Bionaz M., Dann H.M., Morin D.E., Oliveira R., et al. Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows. Physiol Genomics 2007, 32:105-116.
24. Xu C., Wang Z. Comparative proteomic analysis of livers from ketotic cows. Vet Res Commun 2008, 32:263-273.
25. Xu C., Wang Z., Liu G., Li X., Xie G., Xia C., et al. Metabolic characteristic of the liver of dairy cows during ketosis based on comparative proteomics. Asian Australas J Anim Sci 2008, 21(7):1003-1010.
26. Kuhla B., Albrecht D., Kuhla S., Metges C.C. Proteome analysis of fatty liver in feed-deprived dairy cows reveals interaction of fuel sensing, calcium, fatty acid, and glycogen metabolism. Physiol Genomics 2009, 37:88-98.
27. Timperio A.M., D'Alessandro A., Pariset L., D'Amici G.M., Valentini A., Zolla L. Comparative proteomics and transcriptomics analyses of livers from two different Bos Taurus breeds: "Chianina and Holstein Friesian". J Proteomics 2009, 73:309-322.
28. Liu J., Damon M., Guitton N., Guisle I., Ecolan P., Vincent A., et al. Differentially-expressed genes in pig longissimus muscles with contrasting levels of fat, as identified by combined transcriptomic, reverse transcription PCR, and proteomic analyses. J Agric Food Chem 2009, 57(9):3808-3817.
29. Miarelli M., Signorelli F. Differential expression of liver proteins in Chianina and Holstein young bulls. J Anim Sci 2010, 88:593-598.
30. Hazard D., Fernandez X., Pinguet J., Chambon C., Letisse F., Portaix J.C., et al. Functional genomics of the muscle response to restraint and transport in chicken. J Anim Sci 2011, 89(9):2717-2730.
31. Pearce J. Some differences in avian and mammalian biochemistry. Int J Biochem 1977, 8:269-279.
32. Herault F., Saez G., Robert E., Al Mohammad A., Davail S., Chartrin P., et al. Liver gene expression in relation to hepatic steatosis and lipid secretion in two duck species. Anim Genet 2010, 41:12-20.
33. Zhu L., Meng H., Duan X.J., Xu G.Q., Zhang J., Gong D.Q. Gene expression profile in the liver tissue of geese after overfeeding. Poult Sci 2011, 90:107-117.
34. Mourot J., Guy G., Laguarrigue S., Peiniau P., Hermier D. Role of hepatic lipogenesis in the susceptibility to fatty liver in the goose (Anser anser). Comp Biochem Physiol B 2000, 126:81-87.
35. Chartrin P., Bernadet M.D., Guy G., Mourot J., Hoquette J.H., Rideau N., et al. Does overfeeding enhance genotype effects on liver ability for lipogenesis and lipid secretion in ducks?. Comp Biochem Physiol A 2006, 145:390-396.
36. Bax M.L., Marty-Gasset N., Rémignon H., Fernandez X., Molette C. Proteomic profile evolution during steatosis development in duck. Poult Sci 2012, 91:112-120.
37. Gabarrou J.F., Salichon M.R., Guy G., Blum J.C. Hybrid ducks overfed with boiled corn develop an acute hepatic steatosis with decreased choline and polyunsaturated fatty acid level in phospholipids. Reprod Nutr Dev 1996, 36:473-484.
38. Journal Officiel de la République Française, 1993, Décret n° 93-9-99 du 09-08-93 du JO du 14-08-93, relatif aux préparations à base de foie gras.
39. Rousselot-Pailley D., Guy G., Gourichon D., Sellier N., Blum J.C. Influence des conditions d'abattage et de réfrigération sur la qualité des foies gras d'oie 1992, 5:167-172. INRA Productions Animales.
40. Théron L., Marty-Gasset N., Pichereaux C., Rossignol M., Chambon C., Viala D., et al. Identification by proteomic analysis of early post mortem markers involved in the variability in fat loss during cooking of mule duck 'foie gras'. J Agric Food Sci 2011, 59(23):12617-12628.
41. Atzori L., Poli G., Perra A. Hepatic stellate cell: a star cell in the liver. Int J Biochem Cell Biol 2009, 41:1639-1642.