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Volumn 57, Issue 9, 2009, Pages 3808-3817

Differentially-expressed genes in pig longissimus muscles with contrasting levels of fat, as identified by combined transcriptomic, reverse transcription PCR, and proteomic analyses

Author keywords

Gene expression; Intramuscular fat; Longissimusmuscle; Microarray; Pig; Proteome analysis

Indexed keywords

SUIDAE;

EID: 66149121925     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf8033144     Document Type: Article
Times cited : (58)

References (52)
  • 2
    • 0033446983 scopus 로고    scopus 로고
    • Influence of intramuscular fat content on the quality of pig meat. 2. Consumer acceptability of muscle longissimus lumborum
    • Fernandez, X.; Monin, G.; Talmant, A.; Mourot, J.; Lebret, B. Influence of intramuscular fat content on the quality of pig meat. 2. Consumer acceptability of muscle longissimus lumborum. Meat Sci. 1999, 53, 67-72.
    • (1999) Meat Sci , vol.53 , pp. 67-72
    • Fernandez, X.1    Monin, G.2    Talmant, A.3    Mourot, J.4    Lebret, B.5
  • 3
    • 33745810681 scopus 로고    scopus 로고
    • Intramuscular adipocytes-potential to prevent lipotoxicity in skeletal muscle
    • Poulos, S.; Hausman, G. Intramuscular adipocytes-potential to prevent lipotoxicity in skeletal muscle. Adipocytes 2005, 1, 79-94.
    • (2005) Adipocytes , vol.1 , pp. 79-94
    • Poulos, S.1    Hausman, G.2
  • 4
    • 0032610974 scopus 로고    scopus 로고
    • Development of intra- and intermuscular adipose tissue in growing Large White and Meishan pigs
    • Mourot, J.; Kouba, M. Development of intra- and intermuscular adipose tissue in growing Large White and Meishan pigs. Reprod. Nutr. Dev. 1999, 39, 125-132.
    • (1999) Reprod. Nutr. Dev , vol.39 , pp. 125-132
    • Mourot, J.1    Kouba, M.2
  • 5
    • 38149140340 scopus 로고    scopus 로고
    • Sterol regulatory element binding transcription factor 1 expression and genetic polymorphism significantly affect intramuscular fat deposition in the longissimus muscle of Erhualian and Sutai pigs
    • Chen, J.; Yang, X. J.; Xia, D.; Chen, J.; Wegner, J.; Jiang, Z.; Zhao, R. Q. Sterol regulatory element binding transcription factor 1 expression and genetic polymorphism significantly affect intramuscular fat deposition in the longissimus muscle of Erhualian and Sutai pigs. J. Anim. Sci. 2008, 86, 57-63.
    • (2008) J. Anim. Sci , vol.86 , pp. 57-63
    • Chen, J.1    Yang, X.J.2    Xia, D.3    Chen, J.4    Wegner, J.5    Jiang, Z.6    Zhao, R.Q.7
  • 7
    • 33748795108 scopus 로고    scopus 로고
    • Number of intramuscular adipocytes and fatty acid binding protein-4 content are significant indicators of intramuscular fat level in crossbred Large White × Duroc pigs
    • Damon, M.; Louveau, I.; Lefaucheur, L.; Lebret, B.; Vincent, A.; Leroy, P.; Sanchez, M. P.; Herpin, P.; Gondret, F. Number of intramuscular adipocytes and fatty acid binding protein-4 content are significant indicators of intramuscular fat level in crossbred Large White × Duroc pigs. J. Anim. Sci. 2006, 84, 1083-1092.
    • (2006) J. Anim. Sci , vol.84 , pp. 1083-1092
    • Damon, M.1    Louveau, I.2    Lefaucheur, L.3    Lebret, B.4    Vincent, A.5    Leroy, P.6    Sanchez, M.P.7    Herpin, P.8    Gondret, F.9
  • 8
    • 35348952765 scopus 로고    scopus 로고
    • Adipocyte fatty acid-binding protein and mitochondrial enzyme activities in muscles as relevant indicators of marbling in cattle
    • Jurie, C.; Cassar-Malek, I.; Bonnet, M.; Leroux, C.; Bauchart, D.; Boulesteix, P.; Pethick, D. W.; Hocquette, J. F. Adipocyte fatty acid-binding protein and mitochondrial enzyme activities in muscles as relevant indicators of marbling in cattle. J. Anim. Sci. 2007, 85, 2660-2669.
    • (2007) J. Anim. Sci , vol.85 , pp. 2660-2669
    • Jurie, C.1    Cassar-Malek, I.2    Bonnet, M.3    Leroux, C.4    Bauchart, D.5    Boulesteix, P.6    Pethick, D.W.7    Hocquette, J.F.8
  • 9
    • 38149144094 scopus 로고
    • Intramuscular fat and muscle fiber lipid contents in halothane-gene-free pigs fed high or low protein diets and its relation to meat quality
    • Essen-Gustavsson, B.; Karlsson, A.; Lundstrom, K.; Enfalt, A. C. Intramuscular fat and muscle fiber lipid contents in halothane-gene-free pigs fed high or low protein diets and its relation to meat quality. Meat Sci. 1994, 38, 269-277.
    • (1994) Meat Sci , vol.38 , pp. 269-277
    • Essen-Gustavsson, B.1    Karlsson, A.2    Lundstrom, K.3    Enfalt, A.C.4
  • 10
    • 0002459255 scopus 로고    scopus 로고
    • Comparison of intramuscular adipose tissue cellularity in muscles differing in their lipid content and fibre type composition during rabbit growth
    • Gondret, F.; Mourot, J.; Bonneau, M. Comparison of intramuscular adipose tissue cellularity in muscles differing in their lipid content and fibre type composition during rabbit growth. Livest. Prod. Sci. 1998, 54, 1-10.
    • (1998) Livest. Prod. Sci , vol.54 , pp. 1-10
    • Gondret, F.1    Mourot, J.2    Bonneau, M.3
  • 12
    • 33644777287 scopus 로고    scopus 로고
    • Transcriptional profiling of muscle tissue in growing Japanese Black cattle to identify genes involved with the development of intramuscular fat
    • Wang, Y. H.; Reverter, A.; Mannen, H.; Taniguchi, M.; Harper, G. S.; Oyama, K.; Byrne, K. A.; Oka, A.; Tsuji, S.; Lehnert, S. A. Transcriptional profiling of muscle tissue in growing Japanese Black cattle to identify genes involved with the development of intramuscular fat. Aust. J. Exp. Agri. 2005, 45, 809-820.
    • (2005) Aust. J. Exp. Agri , vol.45 , pp. 809-820
    • Wang, Y.H.1    Reverter, A.2    Mannen, H.3    Taniguchi, M.4    Harper, G.S.5    Oyama, K.6    Byrne, K.A.7    Oka, A.8    Tsuji, S.9    Lehnert, S.A.10
  • 13
    • 58149295563 scopus 로고    scopus 로고
    • Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver
    • Kolditz, C. I.; Paboeuf, G.; Borthaire, M.; Esquerré, D.; SanCristobal, M.; Lefevre, F.; Médale, F. Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver. BMC Genomics 2008, 9, 506.
    • (2008) BMC Genomics , vol.9 , pp. 506
    • Kolditz, C.I.1    Paboeuf, G.2    Borthaire, M.3    Esquerré, D.4    SanCristobal, M.5    Lefevre, F.6    Médale, F.7
  • 14
    • 0031441733 scopus 로고    scopus 로고
    • The cellularity of developing adipose tissues in Pietrain and Meishan pigs
    • Hauser, N.; Mourot, J.; De Clercq, L.; Genart, C.; Remacle, C. The cellularity of developing adipose tissues in Pietrain and Meishan pigs. Reprod. Nutr. Dev. 1997, 37, 617-625.
    • (1997) Reprod. Nutr. Dev , vol.37 , pp. 617-625
    • Hauser, N.1    Mourot, J.2    De Clercq, L.3    Genart, C.4    Remacle, C.5
  • 15
    • 0001885264 scopus 로고    scopus 로고
    • Teneur en viande maigre des carcasses de porc, évaluation et estimation
    • Daumas, G.; Dhorne, T. Teneur en viande maigre des carcasses de porc, évaluation et estimation. Journées Rech. Porcine 1997, 29, 411-418.
    • (1997) Journées Rech. Porcine , vol.29 , pp. 411-418
    • Daumas, G.1    Dhorne, T.2
  • 16
    • 70449158340 scopus 로고
    • A simple method for the isolation and purification of total lipids from animal tissues
    • Folch, J.; Lee, M.; Sloane Stanley, G. H. A simple method for the isolation and purification of total lipids from animal tissues. J. Biol. Chem. 1957, 226, 497-509.
    • (1957) J. Biol. Chem , vol.226 , pp. 497-509
    • Folch, J.1    Lee, M.2    Sloane Stanley, G.H.3
  • 17
    • 0004472278 scopus 로고
    • Pork of low technological quality with a normal rate of muscle pH fall in the immediate postmortem period: The case of the Hampshire breed
    • Monin, G.; Sellier, P. Pork of low technological quality with a normal rate of muscle pH fall in the immediate postmortem period: the case of the Hampshire breed. Meat Sci. 1985, 13, 49-63.
    • (1985) Meat Sci , vol.13 , pp. 49-63
    • Monin, G.1    Sellier, P.2
  • 18
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P.; Sacchi, N. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 1987, 162, 156-159.
    • (1987) Anal. Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 20
    • 84988074679 scopus 로고
    • Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels
    • Blum, H.; Beier, H.; Gross, H. J. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 1987, 8, 93-99.
    • (1987) Electrophoresis , vol.8 , pp. 93-99
    • Blum, H.1    Beier, H.2    Gross, H.J.3
  • 21
    • 0029927505 scopus 로고    scopus 로고
    • Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels
    • Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal. Chem. 1996, 68, 850-858.
    • (1996) Anal. Chem , vol.68 , pp. 850-858
    • Shevchenko, A.1    Wilm, M.2    Vorm, O.3    Mann, M.4
  • 22
    • 6044236997 scopus 로고    scopus 로고
    • A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: Importance of replication
    • Le Meur, N.; Lamirault, G.; Bihouée, A.; Steenman, M.; Bédrine-Ferran, H.; Teusan, R.; Ramstein, G.; Léger, J. J.2004. A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication. Nucleic Acids Res. 2004, 8, 5349-5358.
    • (2004) Nucleic Acids Res , vol.2004 , Issue.8 , pp. 5349-5358
    • Le Meur, N.1    Lamirault, G.2    Bihouée, A.3    Steenman, M.4    Bédrine-Ferran, H.5    Teusan, R.6    Ramstein, G.7    Léger, J.J.8
  • 23
    • 0001677717 scopus 로고
    • Controlling the false discovery rate, a practical and powerful approach to multiple testing
    • Benjamini, Y.; Hochberg, Y. Controlling the false discovery rate, a practical and powerful approach to multiple testing. J. Royal Statist. Soc., Ser. B 1995, 57, 289-300.
    • (1995) J. Royal Statist. Soc., Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 24
    • 39049191688 scopus 로고    scopus 로고
    • Quantitative analysis of 2D gels
    • Zivy, M. Quantitative analysis of 2D gels. Methods Mol. Biol. 2007, 355, 175-94.
    • (2007) Methods Mol. Biol , vol.355 , pp. 175-194
    • Zivy, M.1
  • 26
    • 32544436435 scopus 로고    scopus 로고
    • The multigene family of fatty acid-binding proteins (FABPs): Function, structure and polymorphism
    • Chmurzyńska, A. The multigene family of fatty acid-binding proteins (FABPs): function, structure and polymorphism. J. Appl. Genet. 2006, 47, 39-48.
    • (2006) J. Appl. Genet , vol.47 , pp. 39-48
    • Chmurzyńska, A.1
  • 29
    • 14544298335 scopus 로고    scopus 로고
    • The role of MAPKs in adipocyte differentiation and obesity
    • Bost, F.; Aouadi, M.; Caron, L.; Binétruy, B. The role of MAPKs in adipocyte differentiation and obesity. Biochimie 2005, 87, 51-56.
    • (2005) Biochimie , vol.87 , pp. 51-56
    • Bost, F.1    Aouadi, M.2    Caron, L.3    Binétruy, B.4
  • 30
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M. W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29, e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 32
    • 0037585272 scopus 로고    scopus 로고
    • Cross-species hybridisation of pigRNAto human nylon microarrays
    • Moody, D. E.; Zou, Z.; McIntyre, L. Cross-species hybridisation of pigRNAto human nylon microarrays. BMC Genomics 2002, 3, 27.
    • (2002) BMC Genomics , vol.3 , pp. 27
    • Moody, D.E.1    Zou, Z.2    McIntyre, L.3
  • 33
    • 35348892671 scopus 로고    scopus 로고
    • Identification of differentially expressed genes related to intramuscular fat development in the early and late fattening stages of Hanwoo steers
    • Lee, S. H.; Park, E. W.; Cho, Y. M.; Kim, S. K.; Lee, J. H.; Jeon, J. T.; Lee, C. S.; Im, S. K.; Oh, S. J.; Thompson, J. M.; Yoon, D. Identification of differentially expressed genes related to intramuscular fat development in the early and late fattening stages of Hanwoo steers. J. Biochem. Mol. Biol. 2007, 40, 757-764.
    • (2007) J. Biochem. Mol. Biol , vol.40 , pp. 757-764
    • Lee, S.H.1    Park, E.W.2    Cho, Y.M.3    Kim, S.K.4    Lee, J.H.5    Jeon, J.T.6    Lee, C.S.7    Im, S.K.8    Oh, S.J.9    Thompson, J.M.10    Yoon, D.11
  • 34
    • 33845221920 scopus 로고    scopus 로고
    • Control of peroxisome proliferator-activated receptor fate by the ubiquitin-proteasome system
    • Genini, D.; Catapano, C. V. Control of peroxisome proliferator-activated receptor fate by the ubiquitin-proteasome system. J. Recept. Signal Transduct. Res 2006, 26, 679-692.
    • (2006) J. Recept. Signal Transduct. Res , vol.26 , pp. 679-692
    • Genini, D.1    Catapano, C.V.2
  • 35
    • 33646354409 scopus 로고    scopus 로고
    • Activation of CCAAT/enhancer-binding protein (C/EBP) alpha expression by C/EBP beta during adipogenesis requires a peroxisome proliferatoractivated receptor-gamma-associated repression of HDAC1 at the c/EBPalpha gene promoter
    • Zuo, Y.; Qiang, L.; Farmer, S. R. Activation of CCAAT/enhancer-binding protein (C/EBP) alpha expression by C/EBP beta during adipogenesis requires a peroxisome proliferatoractivated receptor-gamma-associated repression of HDAC1 at the c/EBPalpha gene promoter. J. Biol. Chem. 2006, 281, 7960-7967.
    • (2006) J. Biol. Chem , vol.281 , pp. 7960-7967
    • Zuo, Y.1    Qiang, L.2    Farmer, S.R.3
  • 36
    • 33846796185 scopus 로고    scopus 로고
    • Effects of rosiglitazone and high fat diet on lipase/esterase expression in adipose tissue
    • Shen, W. J.; Patel, S.; Yu, Z.; Jue, D.; Kraemer, F. B. Effects of rosiglitazone and high fat diet on lipase/esterase expression in adipose tissue. Biochem. Biophys. Acta. 2007, 1771, 177-184.
    • (2007) Biochem. Biophys. Acta , vol.1771 , pp. 177-184
    • Shen, W.J.1    Patel, S.2    Yu, Z.3    Jue, D.4    Kraemer, F.B.5
  • 38
    • 0348049843 scopus 로고    scopus 로고
    • Molecular mechanisms regulating hormone-sensitive lipase and lipolysis
    • Holm, C. Molecular mechanisms regulating hormone-sensitive lipase and lipolysis. Biochem. Soc. Trans. 2003, 31, 1120-1124.
    • (2003) Biochem. Soc. Trans , vol.31 , pp. 1120-1124
    • Holm, C.1
  • 39
    • 33745859356 scopus 로고    scopus 로고
    • Lipid metabolism and secretory function of porcine intramuscular adipocytes compared with subcutaneous and perirenal adipocytes
    • Gardan, D.; Gondret, F.; Louveau, I. Lipid metabolism and secretory function of porcine intramuscular adipocytes compared with subcutaneous and perirenal adipocytes. Am. J. Physiol. Endocrinol. Metab. 2006, 291, E372-380.
    • (2006) Am. J. Physiol. Endocrinol. Metab , vol.291
    • Gardan, D.1    Gondret, F.2    Louveau, I.3
  • 40
    • 0032513056 scopus 로고    scopus 로고
    • Characterization of a mammalian peroxiredoxin that contains one conserved cysteine
    • Kang, S. W.; Baines, I. C.; Rhee, S. G. Characterization of a mammalian peroxiredoxin that contains one conserved cysteine. Biol. Chem. 1998, 273, 6303-6311.
    • (1998) Biol. Chem , vol.273 , pp. 6303-6311
    • Kang, S.W.1    Baines, I.C.2    Rhee, S.G.3
  • 41
    • 13944267769 scopus 로고    scopus 로고
    • DJ-1 is a redox-dependent molecular chaperone that inhibits alpha-synuclein aggregate formation
    • Shendelman, S.; Jonason, A.; Martinat, C.; Leete, T.; Abeliovich, A. DJ-1 is a redox-dependent molecular chaperone that inhibits alpha-synuclein aggregate formation. PLoS Biol. 2004, 2, e362.
    • (2004) PLoS Biol , vol.2
    • Shendelman, S.1    Jonason, A.2    Martinat, C.3    Leete, T.4    Abeliovich, A.5
  • 42
    • 0033852193 scopus 로고    scopus 로고
    • Receptor isoforms mediate opposing proliferative effects through Gβ?-activated p38 or AKt pathways
    • Sellers, L. A.; Alderton, F.; Carruthers, A. M.; Schindler, M.; Humphrey, P. P. A. Receptor isoforms mediate opposing proliferative effects through Gβ?-activated p38 or AKt pathways. Mol. Cell. Biol. 2000, 20, 5974-5985.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 5974-5985
    • Sellers, L.A.1    Alderton, F.2    Carruthers, A.M.3    Schindler, M.4    Humphrey, P.P.A.5
  • 43
    • 0030044360 scopus 로고    scopus 로고
    • Role of transactivation of the EGF receptor in signaling by G-proteincoupled receptors
    • Daub, H.; Weiss, F. U.; Wallasch, C.; Ullrich, A. Role of transactivation of the EGF receptor in signaling by G-proteincoupled receptors. Nature 1996, 379, 557-560.
    • (1996) Nature , vol.379 , pp. 557-560
    • Daub, H.1    Weiss, F.U.2    Wallasch, C.3    Ullrich, A.4
  • 44
    • 0036227213 scopus 로고    scopus 로고
    • Modulation of adipose tissue expression of murine matrix metalloproteinases and their tissue inhibitors with obesity
    • Maquoi, E.; Munaut, C.; Colige, A.; Collen, D.; Lijnen, H. R. Modulation of adipose tissue expression of murine matrix metalloproteinases and their tissue inhibitors with obesity. Diabetes 2002, 51, 1093-1101.
    • (2002) Diabetes , vol.51 , pp. 1093-1101
    • Maquoi, E.1    Munaut, C.2    Colige, A.3    Collen, D.4    Lijnen, H.R.5
  • 45
    • 33845910111 scopus 로고    scopus 로고
    • Role of the fibrinolytic and matrix metalloproteinase systems in development of adipose tissue
    • Christiaens, V.; Lijnen, H. R. Role of the fibrinolytic and matrix metalloproteinase systems in development of adipose tissue. Arch. Physiol. Biochem. 2006, 112, 254-259.
    • (2006) Arch. Physiol. Biochem , vol.112 , pp. 254-259
    • Christiaens, V.1    Lijnen, H.R.2
  • 51
    • 40849130910 scopus 로고    scopus 로고
    • AMP-activated protein kinase is negatively associated with intramuscular fat content in longissimus dorsi muscle of beef cattle
    • Underwood, K. R.; Means, W. J.; Zhu, M. J.; Ford, S. P.; Hess, B. W.; Du, M. AMP-activated protein kinase is negatively associated with intramuscular fat content in longissimus dorsi muscle of beef cattle. Meat Sci. 2008, 79, 394-402.
    • (2008) Meat Sci , vol.79 , pp. 394-402
    • Underwood, K.R.1    Means, W.J.2    Zhu, M.J.3    Ford, S.P.4    Hess, B.W.5    Du, M.6
  • 52
    • 53349103305 scopus 로고    scopus 로고
    • Expression of adipogenic transcription factors in adipose tissue of fattening Wagyu and Holstein steers
    • Yamada, T.; Kawakami, S. I.; Nakanishi, N. Expression of adipogenic transcription factors in adipose tissue of fattening Wagyu and Holstein steers. Meat Sci. 2009, 81, 86-92.
    • (2009) Meat Sci , vol.81 , pp. 86-92
    • Yamada, T.1    Kawakami, S.I.2    Nakanishi, N.3


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