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Volumn 2, Issue DEC, 2011, Pages

Thousands of novel transcripts identified in mouse cerebrum, testis, and ES cells based on ribo-minus RNA sequencing

Author keywords

Next generation sequencing; Non coding RNA; Novel transcripts; Ribo minus RNA seq

Indexed keywords


EID: 84863501275     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2011.00093     Document Type: Article
Times cited : (13)

References (43)
  • 1
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L., and Elkan, C. (1994). Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 80052978224 scopus 로고    scopus 로고
    • Inte-grative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M. N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A., and Rinn, J. L. (2011). Inte-grative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 10
    • 79957533104 scopus 로고    scopus 로고
    • Non-coding RNAs as regulators of gene expression and epigenetics
    • Glass, C. K., Kaikkonen, M. U., and Lam, M. T. Y. (2011). Non-coding RNAs as regulators of gene expression and epigenetics. Cardiovasc. Res. 90, 430-440.
    • (2011) Cardiovasc. Res. , vol.90 , pp. 430-440
    • Glass, C.K.1    Kaikkonen, M.U.2    Lam, M.T.Y.3
  • 16
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T., and Lempicki, R. A. (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4,44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 17
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da, W., Sherman, B. T., and Lempicki, R. A. (2009). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 18
    • 79960980891 scopus 로고    scopus 로고
    • The noncoding universe
    • doi:10.1186/1741-7007-9-52
    • Jarvis, K., and Robertson, M. (2011). The noncoding universe. BMC Biol. 9, 52. doi:10.1186/1741-7007-9-52
    • (2011) BMC Biol. , vol.9 , pp. 52
    • Jarvis, K.1    Robertson, M.2
  • 28
    • 62349130698 scopus 로고    scopus 로고
    • Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultra-fast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 29
    • 79959446962 scopus 로고    scopus 로고
    • PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
    • Lin, M. F., Jungreis, I., and Kellis, M. (2011). PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. Bioinformatics 27, 1275-1282.
    • (2011) Bioinformatics , vol.27 , pp. 1275-1282
    • Lin, M.F.1    Jungreis, I.2    Kellis, M.3
  • 30
    • 77954840638 scopus 로고    scopus 로고
    • Video Q&A: non-coding RNAs and eukaryotic evolution a personal view
    • doi:10.1186/1741-7007-8-67
    • Mattick, J. (2010). Video Q&A: non-coding RNAs and eukaryotic evolution - a personal view. BMC Biol. 8, 67. doi:10.1186/1741-7007-8-67
    • (2010) BMC Biol. , vol.8 , pp. 67
    • Mattick, J.1
  • 37
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L., and Salzberg, S. L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 39
    • 77952905505 scopus 로고    scopus 로고
    • Most "dark matter" transcripts are associated with known genes
    • doi:10.1371/jour-nal.pbio.1000371
    • van Bakel, H., Nislow, C., Blencowe, B. J., and Hughes, T. R. (2010) Most "dark matter" transcripts are associated with known genes. PLoS Biol. 8, e1000371. doi:10.1371/jour-nal.pbio.1000371
    • (2010) PLoS Biol. , vol.8
    • van Bakel, H.1    Nislow, C.2    Blencowe, B.J.3    Hughes, T.R.4
  • 40
    • 79960921433 scopus 로고    scopus 로고
    • Response to "The Reality of Pervasive Transcription
    • doi:10.1371/journal.pbio.1001102
    • van Bakel, H., Nislow, C., Blencowe, B. J., and Hughes, T. R. (2011). Response to "The Reality of Pervasive Transcription." PLoS Biol. 9. e1001102. doi:10.1371/journal.pbio.1001102
    • (2011) PLoS Biol. , vol.9
    • van Bakel, H.1    Nislow, C.2    Blencowe, B.J.3    Hughes, T.R.4
  • 41
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M., and Snyder, M. (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 42
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
    • Zang, C., Schones, D. E., Zeng, C., Cui, K., Zhao, K., and Peng, W. (2009). A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 25, 1952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 43
    • 77956336624 scopus 로고    scopus 로고
    • A novel role for minimal introns: routing mRNAs to the cytosol
    • doi:10.1371/journal.pone. 0010144
    • Zhu, J., He, F., Wang, D., Liu, K., Huang, D., Xiao, J., Wu, J., Hu, S., and Yu, J. (2010). A novel role for minimal introns: routing mRNAs to the cytosol. PLoS ONE 5, e10144. doi:10.1371/journal.pone. 0010144
    • (2010) PLoS ONE , vol.5
    • Zhu, J.1    He, F.2    Wang, D.3    Liu, K.4    Huang, D.5    Xiao, J.6    Wu, J.7    Hu, S.8    Yu, J.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.