Watching water migration around a peptide bond

Angewandte Chemie - International Edition

Volumn 51, Issue 27, 2012, Pages 6604-6607

  Tanabe, Kohei ^a   Miyazaki, Mitsuhiko ^a   Schmies, Matthias ^b   Patzer, Alexander ^b   Schütz, Markus ^b   Sekiya, Hiroshi ^c   Sakai, Makoto ^a   Dopfer, Otto ^b   Fujii, Masaaki ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^c KYUSHU UNIVERSITY   (Japan)

Author keywords

hydration; hydrogen bonds; IR spectroscopy; isomerization; peptides

Indexed keywords

MIGRATION TIME; O LIGANDS; PEPTIDE BONDS; PEPTIDE LINKAGES; REAL TIME; TIME-RESOLVED IR SPECTROSCOPY; WATER LIGANDS; WATER MIGRATION;

HYDRATION; HYDROGEN BONDS; INFRARED SPECTROSCOPY; ISOMERIZATION; LIGANDS;

PEPTIDES;

PEPTIDE; WATER;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; HYDROGEN BOND; INFRARED SPECTROPHOTOMETRY; METABOLISM; PERMEABILITY;

HYDROGEN BONDING; MODELS, CHEMICAL; PEPTIDES; PERMEABILITY; SPECTROPHOTOMETRY, INFRARED; WATER;

EID: 84863204731     PISSN: 14337851     EISSN: 15213773     Source Type: Journal    
DOI: 10.1002/anie.201203296     Document Type: Article

References (43)

1. P. Hobza, K. Müller-Dethlefs, Non-covalent interactions, The Royal Society of Chemistry, Cambridge, 2010
2. K. Müller-Dethlefs, P. Hobza, Chem. Rev. 2000, 100, 143-168
3. J. P. Schermann, Spectroscopy and modelling of biomolecular building blocks, Elsevier, Amsterdam, 2008.
4. B. Bagchi, Chem. Rev. 2005, 105, 3197-3214
5. P. Ball, Chem. Rev. 2008, 108, 74-108
6. P. Ball, Nature 2011, 478, 467-468
7. M. Chaplin, Nature 2006, 7, 861-866
8. V. P. Denisov, B.-H. Jonsson, B. Halle, Nat. Struct. Mol. Biol. 1999, 6, 253-260
9. M. Grossman, B. Born, M. Heyden, D. Tworowski, G. B. Fields, I. Sagi, M. Havenith, Nat. Struct. Mol. Biol. 2011, 18, 1102-1108
10. B. Halle, Philos. Trans. R. Soc. London Ser. B 2004, 359, 1207-1224
11. A. Mitsutake, Y. Sugita, Y. Okamoto, Biopolymers 2001, 60, 96-123
12. N. V. Nucci, M. S. Pometun, A. J. Wand, Nat. Struct. Mol. Biol. 2011, 18, 245-249
13. G. Otting, E. Liepinsh, K. Wüthrich, Science 1991, 254, 974-980
14. S. K. Pal, A. H. Zewail, Chem. Rev. 2004, 104, 2099-2123
15. D. E. Shaw, P. Maragakis, K. Lindorff-Larsen, S. Piana, R. O. Dror, M. P. Eastwood, J. A. Bank, J. M. Jumper, J. K. Salmon, Y. Shan, W. Wriggers, Science 2010, 330, 341-346
16. T. Yoda, Y. Sugita, Y. Okamoto, Biophys. J. 2010, 99, 1637-1644
17. D. Zhong, Adv. Chem. Phys. 2009, 143, 83-149
18. D. Chandler, Nature 2005, 437, 640-647.
19. M. Fujii, O. Dopfer, Int. Rev. Phys. Chem. 2012, 31, 131-173
20. S. Ishiuchi, M. Sakai, Y. Tsuchida, A. Takeda, Y. Kawashima, M. Fujii, O. Dopfer, K. Müller-Dethlefs, Angew. Chem. 2005, 117, 6305-6307
21. Angew. Chem. Int. Ed. 2005, 44, 6149-6151
22. S. Ishiuchi, M. Sakai, Y. Tsuchida, A. Takeda, Y. Kawashima, O. Dopfer, K. Müller-Dethlefs, M. Fujii, J. Chem. Phys. 2007, 127, 114307-114317
23. S. Ishiuchi, M. Miyazaki, M. Sakai, M. Fujii, M. Schmies, O. Dopfer, Phys. Chem. Chem. Phys. 2011, 13, 2409-2416
24. S. Ishiuchi, M. Sakai, K. Daigoku, T. Ueda, T. Yamanaka, K. Hashimoto, M. Fujii, Chem. Phys. Lett. 2001, 347, 87-92
25. M. Sakai, S. Ishiuchi, M. Fujii, Eur. Phys. J. D 2002, 20, 399-402
26. S. Ishiuchi, M. Sakai, K. Daigoku, K. Hashimoto, M. Fujii, J. Chem. Phys. 2007, 127, 234304-234311.
27. E. Garand, M. Z. Kamrath, P. A. Jordan, A. B. Wolk, C. M. Leavitt, A. B. McCoy, S. J. Miller, M. A. Johnson, Science 2012, 335, 694-698
28. J. R. Clarkson, E. Baquero, V. A. Shubert, E. M. Myshakin, K. D. Jordan, T. S. Zwier, Science 2005, 307, 1443-1446
29. A. Gutberlet, G. Schwaab, O. Birer, M. Masia, A. Kaczmarek, H. Forbert, M. Havenith, D. Marx, Science 2009, 324, 1545-1548
30. M. Miyazaki, A. Fujii, T. Ebata, N. Mikami, Science 2004, 304, 1134-1137
31. J. W. Shin, N. I. Hammer, E. G. Diken, M. A. Johnson, R. S. Walters, T. D. Jaeger, M. A. Duncan, R. A. Christie, K. D. Jordan, Science 2004, 304, 1137-1140.
32. M. Miyazaki, A. Takeda, S. Ishiuchi, M. Sakai, O. Dopfer, M. Fujii, Phys. Chem. Chem. Phys. 2011, 13, 2744-2747.
33. K. Sakota, S. Harada, Y. Shimazaki, H. Sekiya, J. Phys. Chem. A 2011, 115, 626-630
34. K. Sakota, Y. Shimazaki, H. Sekiya, Phys. Chem. Chem. Phys. 2011, 13, 6411-6415
35. H. M. Kim, K. Y. Han, J. Park, G. S. Kim, S. K. Kim, J. Chem. Phys. 2008, 128, 041104-041106
36. O. Dopfer, Z. Phys. Chem. 2005, 219, 125-168
37. M. Gerhards, A. Jansen, C. Unterberg, A. Gerlach, J. Chem. Phys. 2005, 123, 074320-074330
38. T. Ikeda, K. Sakota, Y. Kawashima, S. Yuiga, H. Sekiya, J. Phys. Chem. A 2012, DOI:.
39. S. Ullrich, K. Müller-Dethlefs, J. Phys. Chem. A 2002, 106, 9188-9195.
40. H. Tachikawa, M. Igarashi, T. Ishibashi, J. Phys. Chem. A 2003, 107, 7505-7513.
41. M. J. Frisch, et al., Gaussian 09 Revision A. 02 (Gaussian, Wallingford CT, 2009). See the Supporting Information.
42. C. Walter, R. Kritzer, A. Schubert, C. Meier, O. Dopfer, V. Engel, J. Phys. Chem. A 2010, 114, 9743-9748
43. S. D. Ivanov, O. Asvany, A. Witt, E. Hugo, G. Mathias, B. Redlich, D. Marx, S. Schlemmer, Nat. Chem. 2010, 2, 298-302.