-
1
-
-
0842330869
-
Codon usage bias amongst plant viruses
-
Adams MJ, Antoniw JF (2004) Codon usage bias amongst plant viruses. Arch Virol 149: 113-135.
-
(2004)
Arch Virol
, vol.149
, pp. 113-135
-
-
Adams, M.J.1
Antoniw, J.F.2
-
2
-
-
7344242178
-
Mutation pressure, natural selection, and the evolution of base composition in Drosophila
-
Akashi H, Kliman RM, Eyre-Walker A (1998) Mutation pressure, natural selection, and the evolution of base composition in Drosophila. Genetica 102-103: 49-60.
-
(1998)
Genetica
, vol.102-103
, pp. 49-60
-
-
Akashi, H.1
Kliman, R.M.2
Eyre-Walker, A.3
-
3
-
-
0031906148
-
Increased immune response elicited by DNA vaccination with a synthetic gp120 sequence with optimized codon usage
-
Andre S, Seed B, Eberle J, Schraut W, Bultmann A, Haas J (1998) Increased immune response elicited by DNA vaccination with a synthetic gp120 sequence with optimized codon usage. J Virol 72: 1497-1503.
-
(1998)
J Virol
, vol.72
, pp. 1497-1503
-
-
Andre, S.1
Seed, B.2
Eberle, J.3
Schraut, W.4
Bultmann, A.5
Haas, J.6
-
4
-
-
33745480191
-
Optimization of codon usage of poxvirus genes allows for improved transient expression in mammalian cells
-
Barrett JW, Sun Y, Nazarian SH, Belsito TA, Brunetti CR, McFadden G (2006) Optimization of codon usage of poxvirus genes allows for improved transient expression in mammalian cells. Virus Genes 33: 15-26.
-
(2006)
Virus Genes
, vol.33
, pp. 15-26
-
-
Barrett, J.W.1
Sun, Y.2
Nazarian, S.H.3
Belsito, T.A.4
Brunetti, C.R.5
McFadden, G.6
-
5
-
-
8544269867
-
Improved efficiency of a Salmonella-based vaccine against human papillomavirus type 16 virus-like particles achieved by using a codon-optimized version of L1
-
Baud D, Ponci F, Bobst M, De Grandi P, Nardelli-Haefliger D (2004) Improved efficiency of a Salmonella-based vaccine against human papillomavirus type 16 virus-like particles achieved by using a codon-optimized version of L1. J Virol 78: 12901-12909.
-
(2004)
J Virol
, vol.78
, pp. 12901-12909
-
-
Baud, D.1
Ponci, F.2
Bobst, M.3
de Grandi, P.4
Nardelli-Haefliger, D.5
-
6
-
-
0028229543
-
The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins
-
Berkhout B, van Hemert FJ (1994) The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins. Nucleic Acids Res 22: 1705-1711.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1705-1711
-
-
Berkhout, B.1
van Hemert, F.J.2
-
7
-
-
0036176330
-
Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure
-
Berkhout B, Grigoriev A, Bakker M, Lukashov VV (2002) Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure. AIDS Res Hum Retroviruses 18: 133-141.
-
(2002)
AIDS Res Hum Retroviruses
, vol.18
, pp. 133-141
-
-
Berkhout, B.1
Grigoriev, A.2
Bakker, M.3
Lukashov, V.V.4
-
8
-
-
0029587471
-
The human genome: organization and evolutionary history
-
Bernardi G (1995) The human genome: organization and evolutionary history. Annu Rev Genet 29: 445-476.
-
(1995)
Annu Rev Genet
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
9
-
-
0011051225
-
Evolution of the genome and the genetic code: selection at the dinucleotide level by methylation and polyribonucleotide cleavage
-
Beutler E, Gelbart T, Han JH, Koziol JA, Beutler B (1989) Evolution of the genome and the genetic code: selection at the dinucleotide level by methylation and polyribonucleotide cleavage. Proc Natl Acad Sci USA 86: 192-196.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 192-196
-
-
Beutler, E.1
Gelbart, T.2
Han, J.H.3
Koziol, J.A.4
Beutler, B.5
-
10
-
-
0346991738
-
The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias
-
Bierne N, Eyre-Walker A (2003) The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias. Genetics 165: 1587-1597.
-
(2003)
Genetics
, vol.165
, pp. 1587-1597
-
-
Bierne, N.1
Eyre-Walker, A.2
-
11
-
-
0028135467
-
Insertion of N-linked glycosylation sites in the variable regions of the human immunodeficiency virus type 1 surface glycoprotein through AAT triplet reiteration
-
Bosch ML, Andeweg AC, Schipper R, Kenter M (1994) Insertion of N-linked glycosylation sites in the variable regions of the human immunodeficiency virus type 1 surface glycoprotein through AAT triplet reiteration. J Virol 68: 7566-7569.
-
(1994)
J Virol
, vol.68
, pp. 7566-7569
-
-
Bosch, M.L.1
Andeweg, A.C.2
Schipper, R.3
Kenter, M.4
-
13
-
-
33645215084
-
Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region
-
Burns CC, Shaw J, Campagnoli R, Jorba J, Vincent A, Quay J, Kew O (2006) Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region. J Virol 80: 3259-3272.
-
(2006)
J Virol
, vol.80
, pp. 3259-3272
-
-
Burns, C.C.1
Shaw, J.2
Campagnoli, R.3
Jorba, J.4
Vincent, A.5
Quay, J.6
Kew, O.7
-
14
-
-
0031694427
-
An evaluation of measures of synonymous codon usage bias
-
Comeron JM, Aguade M (1998) An evaluation of measures of synonymous codon usage bias. J Mol Evol 47: 268-274.
-
(1998)
J Mol Evol
, vol.47
, pp. 268-274
-
-
Comeron, J.M.1
Aguade, M.2
-
15
-
-
0032894285
-
Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
-
Comeron JM, Kreitman M, Aguade M (1999) Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics 151: 239-249.
-
(1999)
Genetics
, vol.151
, pp. 239-249
-
-
Comeron, J.M.1
Kreitman, M.2
Aguade, M.3
-
16
-
-
0025808064
-
Stacking energies in DNA
-
Delcourt SG, Blake RD (1991) Stacking energies in DNA. J Biol Chem 266: 15160-15169.
-
(1991)
J Biol Chem
, vol.266
, pp. 15160-15169
-
-
Delcourt, S.G.1
Blake, R.D.2
-
17
-
-
0028028506
-
Molecular biology of rubella virus
-
Frey TK (1994) Molecular biology of rubella virus. Adv Virus Res 44: 69-160.
-
(1994)
Adv Virus Res
, vol.44
, pp. 69-160
-
-
Frey, T.K.1
-
18
-
-
0018879196
-
Codon catalog usage and the genome hypothesis
-
Grantham R, Gautier C, Gouy M, Mercier R, Pave A (1980) Codon catalog usage and the genome hypothesis. Nucleic Acids Res 8: r49-r62.
-
(1980)
Nucleic Acids Res
, vol.8
-
-
Grantham, R.1
Gautier, C.2
Gouy, M.3
Mercier, R.4
Pave, A.5
-
19
-
-
1642412614
-
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales
-
Gu W, Zhou T, Ma J, Sun X, Lu Z (2004) Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales. Virus Res 101: 155-161.
-
(2004)
Virus Res
, vol.101
, pp. 155-161
-
-
Gu, W.1
Zhou, T.2
Ma, J.3
Sun, X.4
Lu, Z.5
-
20
-
-
0030111265
-
Codon usage limitation in the expression of HIV-1 envelope glycoprotein
-
Haas J, Park EC, Seed B (1996) Codon usage limitation in the expression of HIV-1 envelope glycoprotein. Curr Biol 6: 315-324.
-
(1996)
Curr Biol
, vol.6
, pp. 315-324
-
-
Haas, J.1
Park, E.C.2
Seed, B.3
-
21
-
-
0028043552
-
Position-based sequence weights
-
Henikoff S, Henikoff JG (1994) Position-based sequence weights. J Mol Biol 243: 574-578.
-
(1994)
J Mol Biol
, vol.243
, pp. 574-578
-
-
Henikoff, S.1
Henikoff, J.G.2
-
22
-
-
0142028113
-
Phylogenetic analysis of rubella virus including new genotype I isolates
-
Hofmann J, Renz M, Meyer S, von Haeseler A, Liebert UG (2003) Phylogenetic analysis of rubella virus including new genotype I isolates. Virus Res 96: 123-128.
-
(2003)
Virus Res
, vol.96
, pp. 123-128
-
-
Hofmann, J.1
Renz, M.2
Meyer, S.3
von Haeseler, A.4
Liebert, U.G.5
-
23
-
-
0032736988
-
Warm-blooded isochore structure in Nile crocodile and turtle
-
Hughes S, Zelus D, Mouchiroud D (1999) Warm-blooded isochore structure in Nile crocodile and turtle. Mol Biol Evol 16: 1521-1527.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1521-1527
-
-
Hughes, S.1
Zelus, D.2
Mouchiroud, D.3
-
24
-
-
0036147047
-
Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis
-
Jenkins GM, Rambaut A, Pybus OG, Holmes EC (2002) Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J Mol Evol 54: 156-165.
-
(2002)
J Mol Evol
, vol.54
, pp. 156-165
-
-
Jenkins, G.M.1
Rambaut, A.2
Pybus, O.G.3
Holmes, E.C.4
-
25
-
-
0037372775
-
The extent of codon usage bias in human RNA viruses and its evolutionary origin
-
Jenkins GM, Holmes EC (2003) The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res 92: 1-7.
-
(2003)
Virus Res
, vol.92
, pp. 1-7
-
-
Jenkins, G.M.1
Holmes, E.C.2
-
26
-
-
0028221062
-
Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?
-
Karlin S, Doerfler W, Cardon LR (1994) Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses? J Virol 68: 2889-2897.
-
(1994)
J Virol
, vol.68
, pp. 2889-2897
-
-
Karlin, S.1
Doerfler, W.2
Cardon, L.R.3
-
27
-
-
0029060923
-
Dinucleotide relative abundance extremes: a genomic signature
-
Karlin S, Burge C (1995) Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 11: 283-290.
-
(1995)
Trends Genet
, vol.11
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
28
-
-
0033950079
-
The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains
-
Kay BK, Williamson MP, Sudol M (2000) The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. Faseb J 14: 231-241.
-
(2000)
Faseb J
, vol.14
, pp. 231-241
-
-
Kay, B.K.1
Williamson, M.P.2
Sudol, M.3
-
29
-
-
63349106458
-
The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA
-
Keating CP, Hill MK, Hawkes DJ, Smyth RP, Isel C, Le SY, Palmenberg AC, Marshall JA, Marquet R, Nabel GJ, Mak J (2009) The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA. Nucleic Acids Res 37: 945-956.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 945-956
-
-
Keating, C.P.1
Hill, M.K.2
Hawkes, D.J.3
Smyth, R.P.4
Isel, C.5
Le, S.Y.6
Palmenberg, A.C.7
Marshall, J.A.8
Marquet, R.9
Nabel, G.J.10
Mak, J.11
-
30
-
-
79953131312
-
Unusual nucleotide content of Rubella virus genome as a consequence of biased RNA-editing: comparison with Alphaviruses
-
Khrustalev VV, Barkovsky EV (2011) Unusual nucleotide content of Rubella virus genome as a consequence of biased RNA-editing: comparison with Alphaviruses. Int J Bioinform Res Appl 7: 82-100.
-
(2011)
Int J Bioinform Res Appl
, vol.7
, pp. 82-100
-
-
Khrustalev, V.V.1
Barkovsky, E.V.2
-
31
-
-
20444424550
-
Unusual usage of AGG and TTG codons in humans and their viruses
-
Kliman RM, Bernal CA (2005) Unusual usage of AGG and TTG codons in humans and their viruses. Gene 352: 92-99.
-
(2005)
Gene
, vol.352
, pp. 92-99
-
-
Kliman, R.M.1
Bernal, C.A.2
-
32
-
-
0842328805
-
Herpes simplex virus type 1 activates murine natural interferon-producing cells through toll-like receptor 9
-
Krug A, Luker GD, Barchet W, Leib DA, Akira S, Colonna M (2004) Herpes simplex virus type 1 activates murine natural interferon-producing cells through toll-like receptor 9. Blood 103: 1433-1437.
-
(2004)
Blood
, vol.103
, pp. 1433-1437
-
-
Krug, A.1
Luker, G.D.2
Barchet, W.3
Leib, D.A.4
Akira, S.5
Colonna, M.6
-
33
-
-
0032991791
-
CpG islands in chromatin organization and gene expression
-
Kundu TK, Rao MR (1999) CpG islands in chromatin organization and gene expression. J Biochem 125: 217-222.
-
(1999)
J Biochem
, vol.125
, pp. 217-222
-
-
Kundu, T.K.1
Rao, M.R.2
-
34
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blocker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowski J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
Levine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
Doggett, N.94
Cheng, J.F.95
Olsen, A.96
Lucas, S.97
Elkin, C.98
more..
-
35
-
-
0033828846
-
Codon usage in nucleopolyhedroviruses
-
Levin DB, Whittome B (2000) Codon usage in nucleopolyhedroviruses. J General Virol 81: 2313-2325.
-
(2000)
J General Virol
, vol.81
, pp. 2313-2325
-
-
Levin, D.B.1
Whittome, B.2
-
36
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart PJ, Steel MA, Hendy MD, Penny D (1994) Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol 11: 605-612.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
37
-
-
0029075130
-
Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
-
Mansky LM, Temin HM (1995) Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J Virol 69: 5087-5094.
-
(1995)
J Virol
, vol.69
, pp. 5087-5094
-
-
Mansky, L.M.1
Temin, H.M.2
-
38
-
-
0031835052
-
Nitrogen-fixing aerobic bacteria have higher genomic GC content than non-fixing species within the same genus
-
McEwan CE, Gatherer D, McEwan NR (1998) Nitrogen-fixing aerobic bacteria have higher genomic GC content than non-fixing species within the same genus. Hereditas 128: 173-178.
-
(1998)
Hereditas
, vol.128
, pp. 173-178
-
-
McEwan, C.E.1
Gatherer, D.2
McEwan, N.R.3
-
39
-
-
0036369217
-
Molecular basis of fidelity of DNA synthesis and nucleotide specificity of retroviral reverse transcriptases
-
Menendez-Arias L (2002) Molecular basis of fidelity of DNA synthesis and nucleotide specificity of retroviral reverse transcriptases. Prog Nucleic Acid Res Mol Biol 71: 91-147.
-
(2002)
Prog Nucleic Acid Res Mol Biol
, vol.71
, pp. 91-147
-
-
Menendez-Arias, L.1
-
40
-
-
0033844505
-
The evolution of base composition and phylogenetic inference
-
Mooers AO, Holmes EC (2000) The evolution of base composition and phylogenetic inference. Trends Ecol Evol 15: 365-369.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 365-369
-
-
Mooers, A.O.1
Holmes, E.C.2
-
41
-
-
33748923860
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
-
Mueller S, Papamichail D, Coleman JR, Skiena S, Wimmer E (2006) Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. J Virol 80: 9687-9696.
-
(2006)
J Virol
, vol.80
, pp. 9687-9696
-
-
Mueller, S.1
Papamichail, D.2
Coleman, J.R.3
Skiena, S.4
Wimmer, E.5
-
42
-
-
0032581609
-
Codon usage in highly expressed genes of Haemophillus influenzae and Mycobacterium tuberculosis: translational selection versus mutational bias
-
Pan A, Dutta C, Das J (1998) Codon usage in highly expressed genes of Haemophillus influenzae and Mycobacterium tuberculosis: translational selection versus mutational bias. Gene 215: 405-413.
-
(1998)
Gene
, vol.215
, pp. 405-413
-
-
Pan, A.1
Dutta, C.2
Das, J.3
-
43
-
-
0030861159
-
Evolution of codon usage bias in Drosophila
-
Powell JR, Moriyama EN (1997) Evolution of codon usage bias in Drosophila. Proc Natl Acad Sci USA 94: 7784-7790.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 7784-7790
-
-
Powell, J.R.1
Moriyama, E.N.2
-
44
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
(Oxford, England)
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics (Oxford, England) 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
45
-
-
33745654553
-
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses
-
Shackelton LA, Parrish CR, Holmes EC (2006) Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses. J Mol Evol 62: 551-563.
-
(2006)
J Mol Evol
, vol.62
, pp. 551-563
-
-
Shackelton, L.A.1
Parrish, C.R.2
Holmes, E.C.3
-
46
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
Sharp PM, Li WH (1986) An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol 24: 28-38.
-
(1986)
J Mol Evol
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.H.2
-
47
-
-
0023274170
-
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
-
Sharp PM, Li WH (1987) The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol 4: 222-230.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 222-230
-
-
Sharp, P.M.1
Li, W.H.2
-
49
-
-
0014956884
-
Sunlight ultraviolet and bacterial DNA base ratios
-
Singer CE, Ames BN (1970) Sunlight ultraviolet and bacterial DNA base ratios. Science 170: 822-825.
-
(1970)
Science
, vol.170
, pp. 822-825
-
-
Singer, C.E.1
Ames, B.N.2
-
50
-
-
0030199401
-
Problems of translating heterologous genes in expression systems: the role of tRNA
-
Smith DW (1996) Problems of translating heterologous genes in expression systems: the role of tRNA. Biotechnol Prog 12: 417-422.
-
(1996)
Biotechnol Prog
, vol.12
, pp. 417-422
-
-
Smith, D.W.1
-
51
-
-
64049090934
-
Functional replacement of a domain in the rubella virus p150 replicase protein by the virus capsid protein
-
Tzeng WP, Frey TK (2009) Functional replacement of a domain in the rubella virus p150 replicase protein by the virus capsid protein. J Virol 83: 3549-3555.
-
(2009)
J Virol
, vol.83
, pp. 3549-3555
-
-
Tzeng, W.P.1
Frey, T.K.2
-
52
-
-
0035671698
-
Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection
-
Urrutia AO, Hurst LD (2001) Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection. Genetics 159: 1191-1199.
-
(2001)
Genetics
, vol.159
, pp. 1191-1199
-
-
Urrutia, A.O.1
Hurst, L.D.2
-
53
-
-
34250366314
-
Update of standard nomenclature for wild-type rubella viruses, 2007
-
WHO
-
WHO (2007) Update of standard nomenclature for wild-type rubella viruses, 2007. Wkly Epidemiol Rec 82: 216-222.
-
(2007)
Wkly Epidemiol Rec
, vol.82
, pp. 216-222
-
-
-
54
-
-
34250366314
-
-
WHO, Releve epidemiologique hebdomadaire/Section d'hygiene du Secretariat de la Societe des Nations = Weekly epidemiological record/Health Section of the Secretariat of the League of Nations
-
WHO (2007) Update of standard nomenclature for wild-type rubella viruses, 2007. Releve epidemiologique hebdomadaire/Section d'hygiene du Secretariat de la Societe des Nations = Weekly epidemiological record/Health Section of the Secretariat of the League of Nations 82: 216-222.
-
(2007)
Update of standard nomenclature for wild-type rubella viruses, 2007
, vol.82
, pp. 216-222
-
-
-
55
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
Wright F (1990) The 'effective number of codons' used in a gene. Gene 87: 23-29.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
-
56
-
-
84862832341
-
Factors Affecting Codon Frequencies
-
Kluwer Academic Publishers
-
Xia X (2000) Factors Affecting Codon Frequencies. Data Analysis in Molecular Biology and Evolution. Kluwer Academic Publishers, pp 59-105.
-
(2000)
Data Analysis in Molecular Biology and Evolution
, pp. 59-105
-
-
Xia, X.1
-
57
-
-
0034848170
-
DAMBE: software package for data analysis in molecular biology and evolution
-
Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92: 371-373.
-
(2001)
J Hered
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
58
-
-
0345490760
-
Codon usage bias and A + T content variation in human papillomavirus genomes
-
Zhao KN, Liu WJ, Frazer IH (2003) Codon usage bias and A + T content variation in human papillomavirus genomes. Virus Res 98: 95-104.
-
(2003)
Virus Res
, vol.98
, pp. 95-104
-
-
Zhao, K.N.1
Liu, W.J.2
Frazer, I.H.3
-
60
-
-
19444362139
-
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses
-
Zhou T, Gu W, Ma J, Sun X, Lu Z (2005) Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses. Bio Syst 81: 77-86.
-
(2005)
Bio Syst
, vol.81
, pp. 77-86
-
-
Zhou, T.1
Gu, W.2
Ma, J.3
Sun, X.4
Lu, Z.5
-
61
-
-
33847668459
-
Genomic analysis of diverse rubella virus genotypes
-
Zhou Y, Ushijima H, Frey TK (2007) Genomic analysis of diverse rubella virus genotypes. J General Virol 88: 932-941.
-
(2007)
J General Virol
, vol.88
, pp. 932-941
-
-
Zhou, Y.1
Ushijima, H.2
Frey, T.K.3
|