-
1
-
-
65449162673
-
Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
-
Abdelkrim J, Roberson BC, Stanton JL, Gemmell NJ (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques, 46, 185-192.
-
(2009)
BioTechniques
, vol.46
, pp. 185-192
-
-
Abdelkrim, J.1
Roberson, B.C.2
Stanton, J.L.3
Gemmell, N.J.4
-
2
-
-
65449135172
-
Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data
-
Allentoft ME, Schuster SC, Holdaway RN et al. (2009) Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. BioTechniques, 46, 195-200.
-
(2009)
BioTechniques
, vol.46
, pp. 195-200
-
-
Allentoft, M.E.1
Schuster, S.C.2
Holdaway, R.N.3
-
3
-
-
34548555846
-
Cross-species transfer of nuclear microsatellite markers: potential and limitations
-
Barbará T, Palma-Silva C, Paggi GM et al. (2007) Cross-species transfer of nuclear microsatellite markers: potential and limitations. Molecular Ecology, 16, 3759-3767.
-
(2007)
Molecular Ecology
, vol.16
, pp. 3759-3767
-
-
Barbará, T.1
Palma-Silva, C.2
Paggi, G.M.3
-
4
-
-
0003576389
-
-
Laboratoire Genome, Populations, Interactions, CNRS UMR 5171, Universite de Montpellier II, Montpellier, France.
-
Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (19962004) GENETIX 4.05 Logciel sous Windows pour la Genetique des Populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5171, Universite de Montpellier II, Montpellier, France.
-
(1996)
GENETIX 4.05 Logciel sous Windows pour la Genetique des Populations
-
-
Belkhir, K.1
Borsa, P.2
Chikhi, L.3
Raufaste, N.4
Bonhomme, F.5
-
5
-
-
28344455572
-
Additional microsatellites for Sparus aurata and cross-species amplification within the Sparidae family
-
Brown RC, Tsalavouta M, Terzoglou V et al. (2005) Additional microsatellites for Sparus aurata and cross-species amplification within the Sparidae family. Molecular Ecology Notes, 5, 605-607.
-
(2005)
Molecular Ecology Notes
, vol.5
, pp. 605-607
-
-
Brown, R.C.1
Tsalavouta, M.2
Terzoglou, V.3
-
6
-
-
83955162825
-
Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpina (Brassicaceae)
-
Buehler D, Graf R, Holderegger R, Gugerli F (2011) Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpina (Brassicaceae). American Journal of Botany, 98, e1-e3.
-
(2011)
American Journal of Botany
, vol.98
-
-
Buehler, D.1
Graf, R.2
Holderegger, R.3
Gugerli, F.4
-
7
-
-
84859874231
-
Discovery of nuclear and plastid microsatellites and other key genomic information, in rare endemic plant (Caulanthus amplexicaulis var. barbarae) using minimal 454 pyrosequencing
-
Burrell AM, No E, Pepper AE (2011) Discovery of nuclear and plastid microsatellites and other key genomic information, in rare endemic plant (Caulanthus amplexicaulis var. barbarae) using minimal 454 pyrosequencing. Conservation Genetics Resources, 3, 753-755.
-
(2011)
Conservation Genetics Resources
, vol.3
, pp. 753-755
-
-
Burrell, A.M.1
No, E.2
Pepper, A.E.3
-
8
-
-
38049089429
-
Utility of pairwise mtDNA genetic distances for predicting cross-species microsatellite amplification and polymorphism success in fishes
-
Carreras-Carbonell J, Macpherson E, Pascual M (2008) Utility of pairwise mtDNA genetic distances for predicting cross-species microsatellite amplification and polymorphism success in fishes. Conservation Genetics, 9, 181-190.
-
(2008)
Conservation Genetics
, vol.9
, pp. 181-190
-
-
Carreras-Carbonell, J.1
Macpherson, E.2
Pascual, M.3
-
9
-
-
77949335579
-
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
-
Castoe TA, Poole AW, Gu W et al. (2010) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Molecular Ecology Resources, 10, 341-347.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 341-347
-
-
Castoe, T.A.1
Poole, A.W.2
Gu, W.3
-
10
-
-
20144368791
-
Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream (Chrysophrys major) and cross-species amplification
-
Chen SL, Liu YG, Xu MY, Li J (2005) Isolation and characterization of polymorphic microsatellite loci from an EST-library of red sea bream (Chrysophrys major) and cross-species amplification. Molecular Ecology Notes, 5, 215-217.
-
(2005)
Molecular Ecology Notes
, vol.5
, pp. 215-217
-
-
Chen, S.L.1
Liu, Y.G.2
Xu, M.Y.3
Li, J.4
-
11
-
-
67650085264
-
Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses
-
Chiba SN, Iwatsuki Y, Yoshino T, Hanzawa N (2009) Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses. Genes & Genetic Systems, 84, 153-170.
-
(2009)
Genes & Genetic Systems
, vol.84
, pp. 153-170
-
-
Chiba, S.N.1
Iwatsuki, Y.2
Yoshino, T.3
Hanzawa, N.4
-
12
-
-
77958600477
-
Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing
-
Csencsics D, Brodbeck S, Holderegger R (2010) Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing. Journal of Heredity, 101, 789-793.
-
(2010)
Journal of Heredity
, vol.101
, pp. 789-793
-
-
Csencsics, D.1
Brodbeck, S.2
Holderegger, R.3
-
13
-
-
50149095793
-
TM system- Longer reads, more applications, straightforward bioinformatics and more complex data sets
-
TM system- Longer reads, more applications, straightforward bioinformatics and more complex data sets. Journal of Biotechnology, 136, 3-10.
-
(2008)
Journal of Biotechnology
, vol.136
, pp. 3-10
-
-
Droege, M.1
Hill, B.2
-
15
-
-
3042782819
-
Microsatellites: simple sequences with complex evolution
-
Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nature Reviews Genetics, 5, 435-445.
-
(2004)
Nature Reviews Genetics
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
16
-
-
34547168853
-
EST-SSR as a resource for population genetic analyses
-
Ellis JR, Burke JM (2007) EST-SSR as a resource for population genetic analyses. Heredity, 99, 125-132.
-
(2007)
Heredity
, vol.99
, pp. 125-132
-
-
Ellis, J.R.1
Burke, J.M.2
-
17
-
-
36849035794
-
MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design
-
Faircloth BC (2008) MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources, 8, 92-94.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 92-94
-
-
Faircloth, B.C.1
-
18
-
-
0028910661
-
Conservation and dynamics of microsatellite loci over 300years of marine turtle evolution
-
FitzSimmons NN, Moritz C, Moore SS (1995) Conservation and dynamics of microsatellite loci over 300years of marine turtle evolution. Molecular Biology and Evolution, 12, 432-440.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 432-440
-
-
FitzSimmons, N.N.1
Moritz, C.2
Moore, S.S.3
-
19
-
-
80054073468
-
Rise of the machine-recommendations for ecologists when using next generation sequencing for microsatellite development
-
Gardner MG, Fitch AJ, Bertozzi T et al. (2011) Rise of the machine-recommendations for ecologists when using next generation sequencing for microsatellite development. Molecular Ecology Resources, 11, 1093-1101.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 1093-1101
-
-
Gardner, M.G.1
Fitch, A.J.2
Bertozzi, T.3
-
21
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
22
-
-
28844450211
-
-
South African Institute for Aquatic biodiversity, NISC Publishers and SAIAB, Grahamstown.
-
Heemstra P, Heemstra E (2004) Coastal Fishes of Southern Africa. South African Institute for Aquatic biodiversity, NISC Publishers and SAIAB, Grahamstown.
-
(2004)
Coastal Fishes of Southern Africa
-
-
Heemstra, P.1
Heemstra, E.2
-
23
-
-
78650498958
-
Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci
-
Hendrix R, Hauswaldt JS, Veiths M et al. (2010) Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. Molecular Ecology Resources, 10, 1038-1047.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 1038-1047
-
-
Hendrix, R.1
Hauswaldt, J.S.2
Veiths, M.3
-
24
-
-
35848947955
-
Isolation and characterization of polymorphic microsatellite loci in black sea bream (Acanthopagrus schlegeli) by cross-species amplification with six species of the Sparidae family
-
Liu YG, Liu LX, Wu ZX et al. (2007) Isolation and characterization of polymorphic microsatellite loci in black sea bream (Acanthopagrus schlegeli) by cross-species amplification with six species of the Sparidae family. Aquatic Living Resources, 20, 257-262.
-
(2007)
Aquatic Living Resources
, vol.20
, pp. 257-262
-
-
Liu, Y.G.1
Liu, L.X.2
Wu, Z.X.3
-
25
-
-
79959250426
-
High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
-
Malausa T, Gilles A, Maglécz E et al. (2011) High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Molecular Ecology Resources, 11, 638-644.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 638-644
-
-
Malausa, T.1
Gilles, A.2
Maglécz, E.3
-
26
-
-
80051695708
-
Rapid development and screening of microsatellite loci for Artibeus lituratus and their utility for six related species within Phyllostomidae
-
McCulloch ES, Stevens RD (2011) Rapid development and screening of microsatellite loci for Artibeus lituratus and their utility for six related species within Phyllostomidae. Molecular Ecology Resources, 11, 903-913.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 903-913
-
-
McCulloch, E.S.1
Stevens, R.D.2
-
27
-
-
33748685014
-
Rapid and accurate pyrosequencing of angiosperm plastid genomes
-
Moore MJ, Dhingra A, Soltis PS et al. (2006) Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biology, 6, 1-13.
-
(2006)
BMC Plant Biology
, vol.6
, pp. 1-13
-
-
Moore, M.J.1
Dhingra, A.2
Soltis, P.S.3
-
28
-
-
84859870429
-
Characterization of thirteen new polymorphic microsatellite markers from the honeycomb grouper Epinephelus merra
-
Muths D, Bourjea J (2011) Characterization of thirteen new polymorphic microsatellite markers from the honeycomb grouper Epinephelus merra. Conservation Genetics Resources, 3, 629-631.
-
(2011)
Conservation Genetics Resources
, vol.3
, pp. 629-631
-
-
Muths, D.1
Bourjea, J.2
-
29
-
-
0034767567
-
Microsatellite evolution in vertebrates: inference from AC dinucleotide repeats
-
Neff BD, Gross MR (2001) Microsatellite evolution in vertebrates: inference from AC dinucleotide repeats. Evolution, 55, 1717-1733.
-
(2001)
Evolution
, vol.55
, pp. 1717-1733
-
-
Neff, B.D.1
Gross, M.R.2
-
30
-
-
4344606590
-
MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data
-
van Oosterhout C, Hutchinson WF, Wills DP, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
-
(2004)
Molecular Ecology Notes
, vol.4
, pp. 535-538
-
-
van Oosterhout, C.1
Hutchinson, W.F.2
Wills, D.P.3
Shipley, P.4
-
31
-
-
0026607551
-
Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences
-
Ostrander EA, Jong PM, Rine J et al. (1992) Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. PNAS, 89, 3419-3423.
-
(1992)
PNAS
, vol.89
, pp. 3419-3423
-
-
Ostrander, E.A.1
Jong, P.M.2
Rine, J.3
-
32
-
-
0032960123
-
Microsatellites obtained using strand exstension: an enrichment protocol
-
Paetkau D (1999) Microsatellites obtained using strand exstension: an enrichment protocol. BioTechniques, 26, 690-697.
-
(1999)
BioTechniques
, vol.26
, pp. 690-697
-
-
Paetkau, D.1
-
33
-
-
33644862446
-
Isolation and characterization of polymorphic microsatellite markers in Pagellus bogaraveo, and cross-species amplification in Sparus aurata and Dicentrarchus labrax
-
Piñera JA, Bernardo D, Blanco G et al. (2006) Isolation and characterization of polymorphic microsatellite markers in Pagellus bogaraveo, and cross-species amplification in Sparus aurata and Dicentrarchus labrax. Molecular Ecology Notes, 6, 33-35.
-
(2006)
Molecular Ecology Notes
, vol.6
, pp. 33-35
-
-
Piñera, J.A.1
Bernardo, D.2
Blanco, G.3
-
34
-
-
34548777016
-
Usefulness of microsatellite markers developed from Pagellus bogaraveo to genetically study five different species of Sparidae
-
Piñera JA, Bernardo D, Blanco G, Vazquez E, Sanchez JA (2007) Usefulness of microsatellite markers developed from Pagellus bogaraveo to genetically study five different species of Sparidae. Marine Ecology, 28, 184-187.
-
(2007)
Marine Ecology
, vol.28
, pp. 184-187
-
-
Piñera, J.A.1
Bernardo, D.2
Blanco, G.3
Vazquez, E.4
Sanchez, J.A.5
-
35
-
-
22544437602
-
Factors affecting avian cross-species microsatellite amplification
-
Primmer CR, Painter JN, Koskinen MT et al. (2005) Factors affecting avian cross-species microsatellite amplification. Journal of Avian Biology, 36, 348-360.
-
(2005)
Journal of Avian Biology
, vol.36
, pp. 348-360
-
-
Primmer, C.R.1
Painter, J.N.2
Koskinen, M.T.3
-
37
-
-
34447136832
-
Isolation and characterization of nine polymorphic microsatellite markers in the two-banded sea bream (Diplodus vulgaris) and cross-species amplification in the white sea bream (Diplodus sargus) and the saddled bream (Oblada melanura)
-
Roques S, Galarza JA, Macpherson E et al. (2007a) Isolation and characterization of nine polymorphic microsatellite markers in the two-banded sea bream (Diplodus vulgaris) and cross-species amplification in the white sea bream (Diplodus sargus) and the saddled bream (Oblada melanura). Molecular Ecology Notes, 7, 661-663.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 661-663
-
-
Roques, S.1
Galarza, J.A.2
Macpherson, E.3
-
38
-
-
34547435726
-
Isolation of eight microsatellites loci from saddled bream, Oblada melanura and cross-species amplification in two sea bream species of the genus Diplodus
-
Roques S, Galarza JA, Macpherson E et al. (2007b) Isolation of eight microsatellites loci from saddled bream, Oblada melanura and cross-species amplification in two sea bream species of the genus Diplodus. Conservation Genetics, 8, 1255-1257.
-
(2007)
Conservation Genetics
, vol.8
, pp. 1255-1257
-
-
Roques, S.1
Galarza, J.A.2
Macpherson, E.3
-
39
-
-
36849080837
-
Genepop'007: a complete reimplementation of GenePop software for Windows and Linux
-
Rousset F (2008) Genepop'007: a complete reimplementation of GenePop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 103-106
-
-
Rousset, F.1
-
40
-
-
0033990048
-
PRIMER 3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) PRIMER 3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365-386.
-
(2000)
Methods in Molecular Biology
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
41
-
-
65449189638
-
Microsatellite discovery by deep sequencing enriched genomic libraries
-
Santana QC, Coetzee M.P.A., Steenkamp ET et al. (2009) Microsatellite discovery by deep sequencing enriched genomic libraries. BioTechniques, 46, 217-223.
-
(2009)
BioTechniques
, vol.46
, pp. 217-223
-
-
Santana, Q.C.1
Coetzee, M.P.A.2
Steenkamp, E.T.3
-
42
-
-
0026419315
-
Conservation of polymorphic simple sequence loci in cetacean species
-
Schlötterer C, Amos B, Tautz D (1991) Conservation of polymorphic simple sequence loci in cetacean species. Nature, 354, 63-65.
-
(1991)
Nature
, vol.354
, pp. 63-65
-
-
Schlötterer, C.1
Amos, B.2
Tautz, D.3
-
43
-
-
33645894192
-
Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers
-
Selkoe KA, Toonen RJ (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters, 9, 615-629.
-
(2006)
Ecology Letters
, vol.9
, pp. 615-629
-
-
Selkoe, K.A.1
Toonen, R.J.2
-
45
-
-
67649872616
-
Microsatellite markers for the roman, Chrysoblephus laticeps (Teleostei: Sparidae), an overexploited seabream from South Africa
-
Teske PR, Cowley PD, Forget FR, Beheregaray LB (2009) Microsatellite markers for the roman, Chrysoblephus laticeps (Teleostei: Sparidae), an overexploited seabream from South Africa. Molecular Ecology Resources, 9, 1162-1164.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 1162-1164
-
-
Teske, P.R.1
Cowley, P.D.2
Forget, F.R.3
Beheregaray, L.B.4
-
46
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F et al. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Research, 25, 4876-4882.
-
(1997)
Nucleic Acid Research
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
-
47
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
Tóth G, Gáspári Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: survey and analysis. Genome Research, 10, 967-981.
-
(2000)
Genome Research
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
48
-
-
33645859299
-
What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their connectivity
-
Waples RS, Gaggiotti O (2006) What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their connectivity. Molecular Ecology, 15, 1419-1439.
-
(2006)
Molecular Ecology
, vol.15
, pp. 1419-1439
-
-
Waples, R.S.1
Gaggiotti, O.2
|