-
1
-
-
65449162673
-
Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
-
Abdelkrim J, Robertson BC, Stanton JAL, Gemmell NJ (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques, 46, 185-192.
-
(2009)
BioTechniques
, vol.46
, pp. 185-192
-
-
Abdelkrim, J.1
Robertson, B.C.2
Stanton, J.A.L.3
Gemmell, N.J.4
-
2
-
-
0029121722
-
ALU repeats - a source for the genesis of primate microsatellites
-
Arcot SS, Wang ZY, Weber JL, Deininger PL, Batzer MA (1995) ALU repeats - a source for the genesis of primate microsatellites. Genomics, 29, 136-144.
-
(1995)
Genomics
, vol.29
, pp. 136-144
-
-
Arcot, S.S.1
Wang, Z.Y.2
Weber, J.L.3
Deininger, P.L.4
Batzer, M.A.5
-
3
-
-
0033857247
-
Microsatellite variability differs between dinucleotide repeat motifs - evidence from Drosophila melanogaster
-
Bachtrog D, Agis M, Imhof M, Schlotterer C (2000) Microsatellite variability differs between dinucleotide repeat motifs - evidence from Drosophila melanogaster. Molecular Biology and Evolution, 17, 1277-1285.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 1277-1285
-
-
Bachtrog, D.1
Agis, M.2
Imhof, M.3
Schlotterer, C.4
-
4
-
-
77949335579
-
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
-
Castoe TA, Poole AW, Gu WJ et al. (2010) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Molecular Ecology Resources, 10, 341-347.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 341-347
-
-
Castoe, T.A.1
Poole, A.W.2
Gu, W.J.3
-
5
-
-
10744226741
-
Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species
-
Dieringer D, Schlotterer C (2003) Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Research, 13, 2242-2251.
-
(2003)
Genome Research
, vol.13
, pp. 2242-2251
-
-
Dieringer, D.1
Schlotterer, C.2
-
6
-
-
41149166756
-
Sequencing goes 454 and takes large-scale genomics into the wild
-
Ellegren H (2008) Sequencing goes 454 and takes large-scale genomics into the wild. Molecular Ecology, 17, 1629-1631.
-
(2008)
Molecular Ecology
, vol.17
, pp. 1629-1631
-
-
Ellegren, H.1
-
7
-
-
0002961485
-
Microsatellite evolution: inferences from population data
-
(eds Goldstein DB, Schlötterer C) - Oxford University Press, Oxford.
-
Estoup A, Cornuet J-M (1999) Microsatellite evolution: inferences from population data. In: Microsatellites: Evolution and Applications (eds Goldstein DB, Schlötterer C), pp. 49-65. Oxford University Press, Oxford.
-
(1999)
Microsatellites: Evolution and Applications
, pp. 49-65
-
-
Estoup, A.1
Cornuet, J.-M.2
-
8
-
-
36849035794
-
MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design
-
Faircloth BC (2008) MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources, 8, 92-94.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 92-94
-
-
Faircloth, B.C.1
-
9
-
-
0032988052
-
Isolation of microsatellite loci from a social lizard, Egernia stokesii, using a modified enrichment procedure
-
Gardner MG, Cooper SJB, Bull CM, Grant WN (1999) Isolation of microsatellite loci from a social lizard, Egernia stokesii, using a modified enrichment procedure. Journal of Heredity, 90, 301-304.
-
(1999)
Journal of Heredity
, vol.90
, pp. 301-304
-
-
Gardner, M.G.1
Cooper, S.J.B.2
Bull, C.M.3
Grant, W.N.4
-
10
-
-
79956044149
-
Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
-
Gilles A, Meglecz E, Pech N et al. (2011) Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics, 12, 245.
-
(2011)
BMC Genomics
, vol.12
, pp. 245
-
-
Gilles, A.1
Meglecz, E.2
Pech, N.3
-
11
-
-
0030265831
-
Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability
-
Glenn TC, Stephan W, Dessauer HC, Braun MJ (1996) Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability. Molecular Biology and Evolution, 13, 1151-1154.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 1151-1154
-
-
Glenn, T.C.1
Stephan, W.2
Dessauer, H.C.3
Braun, M.J.4
-
12
-
-
78650304994
-
Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites
-
Haasl RJ, Payseur BA (2011) Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites. Heredity, 106, 158-171.
-
(2011)
Heredity
, vol.106
, pp. 158-171
-
-
Haasl, R.J.1
Payseur, B.A.2
-
13
-
-
70349258441
-
Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR
-
Holleley CE, Geerts PG (2009) Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. BioTechniques, 46, 511-517.
-
(2009)
BioTechniques
, vol.46
, pp. 511-517
-
-
Holleley, C.E.1
Geerts, P.G.2
-
14
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg Y (1988) A sharper Bonferroni procedure for multiple tests of significance. Biometrika, 75, 800-803.
-
(1988)
Biometrika
, vol.75
, pp. 800-803
-
-
Hochberg, Y.1
-
15
-
-
77958483312
-
What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats
-
Kelkar YD, Strubczewski N, Hile SE, Chiaromonte F, Eckert KA, Makova KD (2010) What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats. Genome Biology and Evolution, 2, 620-635.
-
(2010)
Genome Biology and Evolution
, vol.2
, pp. 620-635
-
-
Kelkar, Y.D.1
Strubczewski, N.2
Hile, S.E.3
Chiaromonte, F.4
Eckert, K.A.5
Makova, K.D.6
-
16
-
-
77957748140
-
Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing
-
Martin JF, Pech N, Meglécz E et al. (2010) Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing. BMC Genomics, 11-560.
-
(2010)
BMC Genomics
, vol.11
-
-
Martin, J.F.1
Pech, N.2
Meglécz, E.3
-
17
-
-
0032528128
-
Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR
-
McDowell DG, Burns NA, Parkes HC (1998) Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR. Nucleic Acids Research, 26, 3340-3347.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 3340-3347
-
-
McDowell, D.G.1
Burns, N.A.2
Parkes, H.C.3
-
18
-
-
78650309881
-
Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs
-
McInerney CE, Allcock AL, Johnson MP, Bailie DA, Prodohl PA (2011) Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs. Heredity, 106, 78-87.
-
(2011)
Heredity
, vol.106
, pp. 78-87
-
-
McInerney, C.E.1
Allcock, A.L.2
Johnson, M.P.3
Bailie, D.A.4
Prodohl, P.A.5
-
19
-
-
33845969854
-
MICROFAMILY (version 1): a computer program for detecting flanking-region similarities among different microsatellite loci
-
Meglécz E (2007) MICROFAMILY (version 1): a computer program for detecting flanking-region similarities among different microsatellite loci. Molecular Ecology Notes, 7, 18-20.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 18-20
-
-
Meglécz, E.1
-
20
-
-
2542465217
-
High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia
-
Meglécz E, Petenian F, Danchin E, D'Acier AC, Rasplus JY, Faure E (2004) High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia. Molecular Ecology, 13, 1693-1700.
-
(2004)
Molecular Ecology
, vol.13
, pp. 1693-1700
-
-
Meglécz, E.1
Petenian, F.2
Danchin, E.3
D'Acier, A.C.4
Rasplus, J.Y.5
Faure, E.6
-
21
-
-
33847764106
-
Microsatellite flanking region similarities among different loci within insect species
-
Meglécz E, Anderson SJ, Bourguet D et al. (2007) Microsatellite flanking region similarities among different loci within insect species. Insect Molecular Biology, 16, 175-185.
-
(2007)
Insect Molecular Biology
, vol.16
, pp. 175-185
-
-
Meglécz, E.1
Anderson, S.J.2
Bourguet, D.3
-
22
-
-
77949515434
-
QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects
-
Meglécz E, Costedoat C, Dubut V et al. (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics, 26, 403-404.
-
(2010)
Bioinformatics
, vol.26
, pp. 403-404
-
-
Meglécz, E.1
Costedoat, C.2
Dubut, V.3
-
23
-
-
49949114192
-
Detecting short tandem repeats from genome data: opening the software black box
-
Merkel A, Gemmell N (2008) Detecting short tandem repeats from genome data: opening the software black box. Briefings in Bioinformatics, 9, 355-366.
-
(2008)
Briefings in Bioinformatics
, vol.9
, pp. 355-366
-
-
Merkel, A.1
Gemmell, N.2
-
24
-
-
36148937913
-
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
-
Parameswaran P, Jalili R, Tao L et al. (2007) A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Research, 35, e130.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Parameswaran, P.1
Jalili, R.2
Tao, L.3
-
25
-
-
21244468728
-
On the structural differences between markers and genomic AC microsatellites
-
Pardi F, Sibly RM, Wilkinson MJ, Whittaker JC (2005) On the structural differences between markers and genomic AC microsatellites. Journal of Molecular Evolution, 60, 688-693.
-
(2005)
Journal of Molecular Evolution
, vol.60
, pp. 688-693
-
-
Pardi, F.1
Sibly, R.M.2
Wilkinson, M.J.3
Whittaker, J.C.4
-
27
-
-
74549139662
-
Sequence determinants of human microsatellite variability
-
Pemberton TJ, Sandefur CI, Jakobsson M, Rosenberg NA (2009) Sequence determinants of human microsatellite variability. BMC Genomics, 10, 612.
-
(2009)
BMC Genomics
, vol.10
, pp. 612
-
-
Pemberton, T.J.1
Sandefur, C.I.2
Jakobsson, M.3
Rosenberg, N.A.4
-
28
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
In: (eds Krawetz S, Misener S) - Humana Press, Totowa, New Jersey.
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds Krawetz S, Misener S), pp. 365-386. Humana Press, Totowa, New Jersey.
-
(2000)
Bioinformatics Methods and Protocols: Methods in Molecular Biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
29
-
-
77949778188
-
On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs
-
Santure A, Stapley J, Ball A, Birkhead T, Burke T, Slate J (2010) On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs. Molecular Ecology, 19, 1439-1451.
-
(2010)
Molecular Ecology
, vol.19
, pp. 1439-1451
-
-
Santure, A.1
Stapley, J.2
Ball, A.3
Birkhead, T.4
Burke, T.5
Slate, J.6
-
30
-
-
0037360197
-
The Structure of Interrupted Human AC Microsatellites
-
Sibly RM, Meade A, Boxall N, Wilkinson MJ, Corne DW, Whittaker JC (2003) The Structure of Interrupted Human AC Microsatellites. Molecular Biology and Evolution, 20, 453-459.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 453-459
-
-
Sibly, R.M.1
Meade, A.2
Boxall, N.3
Wilkinson, M.J.4
Corne, D.W.5
Whittaker, J.C.6
-
31
-
-
0034192091
-
Efficient genetic markers for population biology
-
Sunnucks P (2000) Efficient genetic markers for population biology. Trends in Evolution and Ecology, 15, 199-203.
-
(2000)
Trends in Evolution and Ecology
, vol.15
, pp. 199-203
-
-
Sunnucks, P.1
-
32
-
-
0021770546
-
Simple sequences are ubiquitous repetitive components of eukaryotic genomes
-
Tautz D, Renz M (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Research, 12, 4127-4139.
-
(1984)
Nucleic Acids Research
, vol.12
, pp. 4127-4139
-
-
Tautz, D.1
Renz, M.2
-
33
-
-
3943088401
-
AutoDimer: a screening tool for primer-dimer and hairpin structures
-
Vallone PM, Butler JM (2004) AutoDimer: a screening tool for primer-dimer and hairpin structures. BioTechniques, 37, 226-231.
-
(2004)
BioTechniques
, vol.37
, pp. 226-231
-
-
Vallone, P.M.1
Butler, J.M.2
-
34
-
-
0035100172
-
Mobile elements and the genesis of microsatellites in dipterans
-
Wilder J, Hollocher H (2001) Mobile elements and the genesis of microsatellites in dipterans. Molecular Biology and Evolution, 18, 384-392.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 384-392
-
-
Wilder, J.1
Hollocher, H.2
-
35
-
-
4544313277
-
Lepidopteran microsatellite DNA: redundant but promising
-
Zhang DX (2004) Lepidopteran microsatellite DNA: redundant but promising. Trends in Evolution and Ecology, 19, 507-509.
-
(2004)
Trends in Evolution and Ecology
, vol.19
, pp. 507-509
-
-
Zhang, D.X.1
|