Rapid development and screening of microsatellite loci for Artibeus lituratus and their utility for six related species within Phyllostomidae

Molecular Ecology Resources

Volumn 11, Issue 5, 2011, Pages 903-913

  McCulloch, Eve S ^a   Stevens, Richard D ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Artibeus lituratus; Microsatellite loci; Next generation sequencing; Phyllostomidae; Primer development

Indexed keywords

MICROSATELLITE DNA; PRIMER DNA;

ANIMAL; ARTICLE; BAT; CLUSTER ANALYSIS; COSTA RICA; DNA SEQUENCE; GENETIC MARKER; GENETIC SCREENING; GENETICS; GENOTYPE; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SOUTH AMERICA; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; CHIROPTERA; CLUSTER ANALYSIS; COSTA RICA; DNA PRIMERS; GENETIC MARKERS; GENETIC TESTING; GENOTYPE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SOUTH AMERICA; SPECIES SPECIFICITY;

ARTIBEUS HARTII; ARTIBEUS LITURATUS; CAROLLIA PERSPICILLATA; LILIUM; PHYLLOSTOMIDAE; STURNIRA LILIUM;

EID: 80051695708     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03027.x     Document Type: Article

References (34)

1. Abdelkrim J, Robertson BC, Stanton JL, Gemmel NJ (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques, 46, 185-192.
2. Allentoft ME, Schuster SC, Holdaway RN et al. (2009) Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. BioTechniques, 46, 195-200.
3. Baker RJ, Bininda-Emonds ORP, Mantilla-Meluk H, Porter CA, Van Den Bussche RA (In press) Molecular timescale of diversification of feeding strategy and morphology in New World leaf-nosed bats (Phyllostomidae): a phylogenetic perspective. In: Evolutionary History of Bats: Fossils, Molecules and Morphology (eds Gunnell GF & Simmons NB). Cambridge University Press, Cambridge.
4. Bininda-Emonds ORP, Cardillo M, Jones KE et al. (2007) The delayed rise of present-day mammals. Nature, 446, 507-512.
5. Buschiazzo E, Gemmell NJ (2006) The rise, fall and renaissance of microsatellites in eukaryotic genomes. Bioessays, 28, 1040-1050.
6. Castoe TA, Poole AW, Gu W et al. (2010) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Molecular Ecology Resources, 10, 341-347.
7. Cooper N, Purvis A (2009) What factors shape rates of phenotypic evolution? A comparative study of cranial morphology of four mammalian clades. Journal of Evolutionary Biology, 22, 1024-1035.
8. Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nature Review Genetics, 5, 435-445.
9. Frankham R (1995) Conservation genetics. Annual Review of Genetics, 29, 305-327.
10. Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. In: Methods in Enzymology 395, Molecular Evolution: Producing the Biochemical Data, Part B (eds Zimmer EA & Roalson EH), pp. 202-222. Academic Press, San Diego, CA.
11. Hansen MC, Stehman SV, Potapov PV et al. (2008) Humid tropical forest clearing from 2000 to 2005 quantified by using multitemporal and multiresolution remotely sensed data. Proceedings of the National Academy of Sciences, 105, 9439-9444.
12. Holderegger R, Wagner HH (2006) A brief guide to landscape genetics. Landscape Ecology, 21, 793-796.
13. Hubbell SP, He F, Condit R et al. (2008) How many tree species are there in the Amazon and how many of them will go extinct? Proceedings of the National Academy of Sciences, 105, 11498-11504.
14. Jones KE, Purvis A, MacLarnon A, Bininda-Emonds ORP, Simmons NB (2002) A phylogenetic supertree of the bats (Mammalia: Chiroptera). Biological Reviews, 77, 223-259.
15. Laurance WF, Cochrane MA, Bergen S et al. (2001) Environment: the future of the Brazilian Amazon. Science, 291, 438-439.
16. Laurance WF, Nascimento HEM, Laurance SG et al. (2006) Rapid decay of tree-community composition in Amazonian forest fragments. Proceedings of the National Academy of Sciences, 103, 19010-19014.
17. López-González C (2005) Murciélagos de Paraguay Biosfera: Publicaciones del Comité Español del Programa Hombre y Biosfera-Red IberoMaB, UNESCO.
18. Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution, 18, 189-197.
19. Ortega J, Maldonado JE, Arita HT, Wilkinson GS, Fleischer RC (2002) Characterization of microsatellite loci in the Jamaican fruit-eating bat Artibeus jamaicensis and cross-species amplification. Molecular Ecology Notes, 2, 462-464.
20. Parry M, Canziani O, Palutikof J, Linden Pvd, Hanson C (2007) Climate Change 2007: Impacts, Adaptation and Vulnerability. Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, P. 982. Cambridge University Press, Cambridge, UK.
21. Primmer CR, Raudsepp T, Chowdhary BP, Møller AP, Ellegren H (1997) Low frequency of microsatellites in the avian genome. Genome Research, 7, 471-482.
22. Redi CA, Zacharias H, Merani S et al. (2005) Genome sizes in Afrotheria, Xenarthra, Euarchontoglires, and Laurasiatheria. Journal of Heredity, 96, 485-493.
23. Redondo RAF, Brina LPS, Silva RF, Ditchfield AD, Santos FR (2008) Molecular systematics of the genus Artibeus (Chiroptera: Phyllostomidae). Molecular Phylogenetics and Evolution, 49, 44-58.
24. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds. Krawetz S & Misener S), pp. 365-386. Humana Press, Totowa, NJ.
25. R-project (2008) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
26. Sambrook J, Russell D (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
27. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nature: Biotechnology, 18, 233-234.
28. Selkoe KA, Toonen RJ (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters, 9, 615-629.
29. Stevens RD, Willig MR, Gamarra de Fox I (2004) Comparative community ecology of bats from eastern Paraguay: Taxonomic, ecological, and biogeographic perspectives. Journal of Mammalogy, 85, 698-707.
30. Storfer A, Murphy MA, Evans JS et al. (2007) Putting the 'landscape' in landscape genetics. Heredity, 98, 128-142.
31. Suzuki R, Shimodaira H (2009) pvclust: hierarchical clustering with P-values via multiscale bootstrap resampling. R-project.
32. Van Den Bussche RA, Baker RJ, Wichman HA, Hamilton MJ (1993) Molecular phylogenetics of stenodermatini bat genera: congruence of data from nuclear and mitochondrial DNA. Molecular Biology and Evolution, 10, 944-959.
33. Van den Bussche RA, Longmire JL, Baker RJ (1995) How bats achieve a small C-value: frequency of repetitive DNA in Macrotus. Mammalian Genome, 6, 521-525.
34. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.