메뉴 건너뛰기




Volumn 101, Issue 6, 2010, Pages 789-793

Cost-effective, species-specific microsatellite development for the endangered dwarf bulrush (Typha minima) using next-generation sequencing technology

Author keywords

454 sequencing; conservation biology; M13 labeling; riparian flood plains; Rohrbachia minima

Indexed keywords

ARTICLE; COST EFFECTIVENESS ANALYSIS; ENDANGERED SPECIES; GENE SEQUENCE; HETEROZYGOSITY; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; POPULATION GENETICS; PRIORITY JOURNAL; PYROSEQUENCING; SPECIES DIFFERENCE; TYPHA MINIMA;

EID: 77958600477     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esq069     Document Type: Article
Times cited : (106)

References (31)
  • 1
    • 65449162673 scopus 로고    scopus 로고
    • Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
    • Abdelkrim J, Robertson BC, Stanton J-AL, Gemmell NJ. 2009. Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. Bio Techniques. 46:185-192.
    • (2009) Bio Techniques , vol.46 , pp. 185-192
    • Abdelkrim, J.1    Robertson, B.C.2    J-Al, S.3    Gemmell, N.J.4
  • 3
    • 77950104231 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers in the rare clonal plant, Spiraea virginiana (Rosaceae)
    • doi: 10.3732/ajb.1000008
    • Brzyski JR. 2010. Isolation and characterization of microsatellite markers in the rare clonal plant, Spiraea virginiana (Rosaceae). Am J Bot. 97:E20-E22, doi: 10.3732/ajb.1000008.
    • (2010) Am J Bot. , Issue.97
    • Brzyski, J.R.1
  • 5
    • 77949335579 scopus 로고    scopus 로고
    • Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
    • Castoe TA, Poole AW, Gu W, De Koning J, Daza J M, Smith EN, Pollock DD. 2009. Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour. 10:341-347.
    • (2009) Mol Ecol Resour , vol.10 , pp. 341-347
    • Castoe, T.A.1    Poole, A.W.2    Gu, W.3    De Koning, J.4    Daza, J.M.5    Smith, E.N.6    Pollock, D.D.7
  • 7
    • 33244481030 scopus 로고    scopus 로고
    • Characterization of newly developed microsatellite loci in the stemmed yellow violet, Viola pubescens (Violaceae)
    • Culley T. 2005. Characterization of newly developed microsatellite loci in the stemmed yellow violet, Viola pubescens (Violaceae). Mol Ecol Notes. 5:882-884.
    • (2005) Mol Ecol Notes , vol.5 , pp. 882-884
    • Culley, T.1
  • 8
    • 50849109810 scopus 로고    scopus 로고
    • Characterization of microsatellite loci in the Hawaiian endemic shrub Schiedea adamantis (Caryophyllaceae) and amplification in related species and genera
    • Culley T, Weller SG, Sakai AK, Putnam KA. 2008. Characterization of microsatellite loci in the Hawaiian endemic shrub Schiedea adamantis (Caryophyllaceae) and amplification in related species and genera. Mol Ecol Res. 8:1081-1084.
    • (2008) Mol Ecol Res , vol.8 , pp. 1081-1084
    • Culley, T.1    Weller, S.G.2    Sakai, A.K.3    Putnam, K.A.4
  • 9
    • 0009951406 scopus 로고
    • Verbreitungsrückgang von Myricariagermanica Desv. Und Typha minima Hoppe auf der Alpennordseite Graubündens. Vierteljschr
    • Endress PK. 1975. Verbreitungsrückgang von Myricariagermanica Desv. Und Typha minima Hoppe auf der Alpennordseite Graubündens. Vierteljschr. Der Naturforschenden Gesellschaft Zürich. 120:1-14.
    • (1975) Der Naturforschenden Gesellschaft Zürich , vol.120 , pp. 1-14
    • Endress, P.K.1
  • 10
    • 36849035794 scopus 로고    scopus 로고
    • MSATCOMMANDER: Detection of microsatellite repeat arrays and automated, locus-specific primer design
    • Faircloth BC. 2008. MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Mol Ecol Resour. 8:92-94.
    • (2008) Mol Ecol Resour , vol.8 , pp. 92-94
    • Faircloth, B.C.1
  • 11
    • 0036333193 scopus 로고    scopus 로고
    • Isozyme diversity and reproduction of Typha minima populations on the upper River Rhine
    • Galeuchet D, Holderegger R, Rutishauser R, Schneller J. 2002. Isozyme diversity and reproduction of Typha minima populations on the upper River Rhine. Aquat Bot. 74:19-32.
    • (2002) Aquat Bot , vol.74 , pp. 19-32
    • Galeuchet, D.1    Holderegger, R.2    Rutishauser, R.3    Schneller, J.4
  • 13
    • 33847074909 scopus 로고    scopus 로고
    • Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    • Kalinowski ST, Taper ML, Marshall TC. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol. 16:1099-1106.
    • (2007) Mol Ecol , vol.16 , pp. 1099-1106
    • Kalinowski, S.T.1    Taper, M.L.2    Marshall, T.C.3
  • 18
    • 0009895953 scopus 로고
    • Verbreitung, Vergesellschaftung und Rückgang des Zwergrohrkolbens (Typha minima Hoppe)
    • Müller N. 1991. Verbreitung, Vergesellschaftung und Rückgang des Zwergrohrkolbens (Typha minima Hoppe). Hoppea. 50:19.
    • (1991) Hoppea , vol.50 , pp. 19
    • Müller, N.1
  • 19
    • 77955051644 scopus 로고    scopus 로고
    • Zur Wiederansiedlungdes Zwergrohrkolbens (Typha minima Hoppe) in den Alpen-eine Zielart alpiner Flusslandschaften
    • Müller N. 2007. Zur Wiederansiedlungdes Zwergrohrkolbens (Typha minima Hoppe) in den Alpen-eine Zielart alpiner Flusslandschaften. Natur in Tirol. 13:180-193.
    • (2007) Natur in Tirol , vol.13 , pp. 180-193
    • Müller, N.1
  • 21
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond M, Rousset F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered. 86:248-249.
    • (1995) J Hered , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 22
    • 36849080837 scopus 로고    scopus 로고
    • Genepop'007: A complete reimplementation of the Genepop software for Windows and Linux
    • Rousset F. 2008. Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour. 8:103-106.
    • (2008) Mol Ecol Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 23
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S, Misener S, editors Totowa, NJ: Humana Press
    • Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinfor-matics methods and protocols: methods in molecular biology. Totowa, NJ: Humana Press. p. 365-386.
    • (2000) Bioinfor-matics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 25
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labelling of PCR fragments
    • Schuelke M. 2000. An economic method for the fluorescent labelling of PCR fragments. Nat Biotechnol. 18:233-234.
    • (2000) Nat Biotechnol , vol.18 , pp. 233-234
    • Schuelke, M.1
  • 26
    • 33645894192 scopus 로고    scopus 로고
    • Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers
    • Selkoe KA, Toonen RJ. 2006. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol Let. 9:615-629.
    • (2006) Ecol Let , vol.9 , pp. 615-629
    • Selkoe, K.A.1    Toonen, R.J.2
  • 28
    • 77955056195 scopus 로고    scopus 로고
    • Spatial structure and clonal distribution of genotypes in the rare Typha minima Hoppe (Typhaceae) along a river system
    • doi: 10.1007/s00035-010-0069-x
    • Till-Bottraud I, Poncet BN, Rioux D, Girel J. 2010. Spatial structure and clonal distribution of genotypes in the rare Typha minima Hoppe (Typhaceae) along a river system. Botanica Helv. doi: 10.1007/s00035-010-0069-x.
    • (2010) Botanica Helv
    • Till-Bottraud, I.1    Poncet, B.N.2    Rioux, D.3    Girel, J.4
  • 29
    • 70449344714 scopus 로고    scopus 로고
    • Development ofmicrosatellite markers for the short-beaked echidna using three different approaches
    • Vanpé C, Buschiazzo E, Abdelkrim J, Morrow C, Nicol SC, Gemmell NJ. 2009. Development ofmicrosatellite markers for the short-beaked echidna using three different approaches. Aust J Zool. 57:219-224.
    • (2009) Aust J Zool , vol.57 , pp. 219-224
    • Vanpé, C.1    Buschiazzo, E.2    Abdelkrim, J.3    Morrow, C.4    Nicol, S.C.5    Gemmell, N.J.6
  • 30
    • 0031760603 scopus 로고    scopus 로고
    • Short allele dominance as a source of heterozygote deficiency at microsatellite loci: Experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta)
    • Wattier R, Engel CR, Saumitou-Laprade P, Valero M. 1998. Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Mol Ecol. 7:1569-1573.
    • (1998) Mol Ecol , vol.7 , pp. 1569-1573
    • Wattier, R.1    Engel, C.R.2    Saumitou-Laprade, P.3    Valero, M.4
  • 31
    • 77958603772 scopus 로고    scopus 로고
    • Observations sur la distribution des Orthoptères des zones alluviales dans les Alpes occidentales et sur leur valeur d'indicateurs pour la revitalisation des grandes rivières
    • Werner P. 2001. Observations sur la distribution des Orthoptères des zones alluviales dans les Alpes occidentales et sur leur valeur d'indicateurs pour la revitalisation des grandes rivières. Bull Rom Entomol. 19:27-46.
    • (2001) Bull Rom Entomol , vol.19 , pp. 27-46
    • Werner, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.