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Volumn 10, Issue 2, 2010, Pages 341-347

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

Author keywords

High throughput marker identification; Next generation sequencing; Simple sequence repeats; Snake genomics; Viperidae

Indexed keywords

AGKISTRODON; AGKISTRODON CONTORTRIX; VIPERIDAE;

EID: 77949335579     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2009.02750.x     Document Type: Article
Times cited : (180)

References (19)
  • 1
    • 65449162673 scopus 로고    scopus 로고
    • Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
    • Abdelkrim J, Robertson BC, Stanton JL, Gemmel NJ. Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. BioTechniques 2009, 46:185-192.
    • (2009) BioTechniques , vol.46 , pp. 185-192
    • Abdelkrim, J.1    Robertson, B.C.2    Stanton, J.L.3    Gemmel, N.J.4
  • 2
    • 65449135172 scopus 로고    scopus 로고
    • Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data
    • Allentoft ME, Schuster SC, Holdaway RN. Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. BioTechniques 2009, 46:195-200.
    • (2009) BioTechniques , vol.46 , pp. 195-200
    • Allentoft, M.E.1    Schuster, S.C.2    Holdaway, R.N.3
  • 3
    • 33749991391 scopus 로고    scopus 로고
    • The rise, fall and renaissance of microsatellites in eukaryotic genomes
    • Buschiazzo E, Gemmell NJ. The rise, fall and renaissance of microsatellites in eukaryotic genomes. BioEssays 2006, 28:1040-1050.
    • (2006) BioEssays , vol.28 , pp. 1040-1050
    • Buschiazzo, E.1    Gemmell, N.J.2
  • 5
    • 0000800130 scopus 로고
    • The nuclear Feulgen-DNA content of the vertebrates (especially reptiles), as measured by fluorescence cytophotometry, with notes on the cell and chromosome size
    • De Smet WHO. The nuclear Feulgen-DNA content of the vertebrates (especially reptiles), as measured by fluorescence cytophotometry, with notes on the cell and chromosome size. Acta Zoologica et Pathologica Antverpiensia 1981, 76:119-167.
    • (1981) Acta Zoologica et Pathologica Antverpiensia , vol.76 , pp. 119-167
    • De Smet, W.H.O.1
  • 6
    • 33745595097 scopus 로고    scopus 로고
    • Using pyrosequencing to shed light on deep mine microbial ecology
    • Edwards RA, Rodriguez-Brito B, Wegley L. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 2006, 7:57.
    • (2006) BMC Genomics , vol.7 , pp. 57
    • Edwards, R.A.1    Rodriguez-Brito, B.2    Wegley, L.3
  • 7
    • 41149166756 scopus 로고    scopus 로고
    • Sequencing goes 454 and takes large-scale genomics into the wild
    • Ellegren H. Sequencing goes 454 and takes large-scale genomics into the wild. Molecular Ecology 2008, 17:1629-1631.
    • (2008) Molecular Ecology , vol.17 , pp. 1629-1631
    • Ellegren, H.1
  • 8
    • 0030983892 scopus 로고    scopus 로고
    • Launching microsatellites: a review of mutation processes and methods in phylogenetic inference
    • Goldstein DB, Pollock DD. Launching microsatellites: a review of mutation processes and methods in phylogenetic inference. Journal of Heredity 1997, 88:335-342.
    • (1997) Journal of Heredity , vol.88 , pp. 335-342
    • Goldstein, D.B.1    Pollock, D.D.2
  • 9
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold N, Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nature Methods 2008, 5:235-237.
    • (2008) Nature Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.4    Knight, R.5
  • 10
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • Hudson ME. Sequencing breakthroughs for genomic ecology and evolutionary biology. Molecular Ecology Resources 2008, 8:3-17.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 3-17
    • Hudson, M.E.1
  • 12
    • 38049048656 scopus 로고    scopus 로고
    • The genome-wide determinants of human and chimpanzee microsatellite evolution
    • Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. The genome-wide determinants of human and chimpanzee microsatellite evolution. Genome Research 2008, 18:30-38.
    • (2008) Genome Research , vol.18 , pp. 30-38
    • Kelkar, Y.D.1    Tyekucheva, S.2    Chiaromonte, F.3    Makova, K.D.4
  • 13
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the World Wide Web for general users and for biologist programmers
    • Krawetz S, Misener S. eds, Humana Press, Totowa, NJ
    • Rozen S, Skaletsky H. Primer3 on the World Wide Web for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Krawetz S, Misener S. In, eds, pp, Humana Press, Totowa, NJ
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 14
    • 65449189638 scopus 로고    scopus 로고
    • Microsatellite discovery by deep sequencing of enriched genomic libraries
    • Santana QC, Coetzee MPA, Steenkamp ET. Microsatellite discovery by deep sequencing of enriched genomic libraries. BioTechniques 2009, 46:217-223.
    • (2009) BioTechniques , vol.46 , pp. 217-223
    • Santana, Q.C.1    Coetzee, M.P.A.2    Steenkamp, E.T.3
  • 15
    • 33645894192 scopus 로고    scopus 로고
    • Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers
    • Selkoe KA, Toonen RJ. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters 2006, 9:615-629.
    • (2006) Ecology Letters , vol.9 , pp. 615-629
    • Selkoe, K.A.1    Toonen, R.J.2
  • 16
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • Tóth G, Gáspári GZ, Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Research 2000, 10:967-981.
    • (2000) Genome Research , vol.10 , pp. 967-981
    • Tóth, G.1    Gáspári, G.Z.2    Jurka, J.3
  • 17
    • 58949104467 scopus 로고    scopus 로고
    • New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach
    • Valentini A, Miguel C, Nawaz MA. New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Molecular Ecology Resources 2009, 9:51-60.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 51-60
    • Valentini, A.1    Miguel, C.2    Nawaz, M.A.3
  • 18
    • 50049109703 scopus 로고    scopus 로고
    • To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?
    • Väli Ü, Einarsson A, Waits L, Ellegren H. To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations? Molecular Ecology 2008, 17:3808-3817.
    • (2008) Molecular Ecology , vol.17 , pp. 3808-3817
    • Väli, Ü.1    Einarsson, A.2    Waits, L.3    Ellegren, H.4
  • 19
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera JC, Wheat CW, Fescemyer HW. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology 2008, 17:1636-1647.
    • (2008) Molecular Ecology , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.