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Volumn 7, Issue 6, 2012, Pages

Interpretation and visualization of non-linear data fusion in kernel space: Study on metabolomic characterization of progression of multiple sclerosis

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CLASSIFICATION ALGORITHM; CONTROLLED STUDY; DATA EXTRACTION; DISEASE COURSE; HUMAN; INFORMATION PROCESSING; KERNEL METHOD; KERNEL PARTIAL LEAST SQUARE DISCRIMINANT ANALYSIS; METABOLOMICS; MULTIPLE SCLEROSIS; PREDICTION; RELIABILITY; SUPPORT VECTOR MACHINE RECURSIVE FEATURE ELIMINATION; ADULT; CEREBROSPINAL FLUID; CLINICAL TRIAL; DEVICES; FEMALE; MALE; MASS SPECTROMETRY; METABOLOME; MULTICENTER STUDY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROCEDURES; RANDOMIZED CONTROLLED TRIAL;

EID: 84862003752     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0038163     Document Type: Article
Times cited : (65)

References (45)
  • 1
    • 75749140577 scopus 로고    scopus 로고
    • Bidirectional Correlation of NMR and Capillary Electrophoresis Fingerprints: A New Approach to Investigating Schistosoma mansoni Infection in a Mouse Model
    • Barbas C, Garcia-Perez I, Alves AC, Angulo S, Li JV, (2010) Bidirectional Correlation of NMR and Capillary Electrophoresis Fingerprints: A New Approach to Investigating Schistosoma mansoni Infection in a Mouse Model. Analytical Chemistry 82: 203 210.
    • (2010) Analytical Chemistry , vol.82 , pp. 203
    • Barbas, C.1    Garcia-Perez, I.2    Alves, A.C.3    Angulo, S.4    Li, J.V.5
  • 2
    • 84862013674 scopus 로고    scopus 로고
    • Combining Petterns Classifiers; Wiley, editor
    • Kuncheva LI, (2004) Combining Petterns Classifiers; Wiley, editor. Hoboken, New Jersey.
    • (2004) Hoboken, New Jersey
    • Kuncheva, L.I.1
  • 4
    • 0027564324 scopus 로고
    • Nmr-Spectroscopy of Human Postmortem Cerebrospinal-Fluid - Distinction of Alzheimers-Disease from Control Using Pattern-Recognition and Statistics
    • Ghauri FYK, Nicholson JK, Sweatman BC, Wood J, Beddell CR, (1993) Nmr-Spectroscopy of Human Postmortem Cerebrospinal-Fluid- Distinction of Alzheimers-Disease from Control Using Pattern-Recognition and Statistics. NMR in Biomedicine 6: 163 167.
    • (1993) NMR in Biomedicine , vol.6 , pp. 163
    • Ghauri, F.Y.K.1    Nicholson, J.K.2    Sweatman, B.C.3    Wood, J.4    Beddell, C.R.5
  • 6
    • 77149179378 scopus 로고    scopus 로고
    • NMR-based metabolomic analysis of cerebrospinal fluid and serum in neurological diseases-a diagnostic tool?
    • Sinclair AJ, Viant MR, Ball AK, Burdon MA, Walker EA, (2010) NMR-based metabolomic analysis of cerebrospinal fluid and serum in neurological diseases-a diagnostic tool? NMR in Biomedicine 23: 123 132.
    • (2010) NMR in Biomedicine , vol.23 , pp. 123
    • Sinclair, A.J.1    Viant, M.R.2    Ball, A.K.3    Burdon, M.A.4    Walker, E.A.5
  • 7
    • 0037469988 scopus 로고    scopus 로고
    • Fusion of aroma, FT-IR and UV sensor data based on the Bayesian inference. Application to the discrimination of white grape varieties
    • Roussel S, Bellon-Maurel V, Roger JM, Grenier P, (2003) Fusion of aroma, FT-IR and UV sensor data based on the Bayesian inference. Application to the discrimination of white grape varieties. Chemometrics and Intelligent Laboratory Systems 65: 209 219.
    • (2003) Chemometrics and Intelligent Laboratory Systems , vol.65 , pp. 209
    • Roussel, S.1    Bellon-Maurel, V.2    Roger, J.M.3    Grenier, P.4
  • 12
    • 79959371685 scopus 로고    scopus 로고
    • Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis
    • Blanchet L, Smolinska A, Attali A, Stoop MP, Ampt KA, (2011) Fusion of metabolomics and proteomics data for biomarkers discovery: case study on the experimental autoimmune encephalomyelitis. BMC Bioinformatics 12: 254.
    • (2011) BMC Bioinformatics , vol.12 , pp. 254
    • Blanchet, L.1    Smolinska, A.2    Attali, A.3    Stoop, M.P.4    Ampt, K.A.5
  • 15
    • 24744435534 scopus 로고    scopus 로고
    • Kernel methods for predicting protein-protein interactions
    • Ben-Hur A, Noble WS, (2005) Kernel methods for predicting protein-protein interactions. Bioinformatics 21: I38 I46.
    • (2005) Bioinformatics , vol.21
    • Ben-Hur, A.1    Noble, W.S.2
  • 16
    • 77955644255 scopus 로고    scopus 로고
    • Visualization and recovery of the (bio)chemical interesting variables in data analysis with support vector machine classification
    • Krooshof PW, Ustun B, Postma GJ, Buydens LM, (2010) Visualization and recovery of the (bio)chemical interesting variables in data analysis with support vector machine classification. Analytical Chemistry 82: 7000 7007.
    • (2010) Analytical Chemistry , vol.82 , pp. 7000
    • Krooshof, P.W.1    Ustun, B.2    Postma, G.J.3    Buydens, L.M.4
  • 17
    • 80053386153 scopus 로고    scopus 로고
    • Opening the kernel of kernel partial least squares and support vector machines
    • Postma GJ, Krooshof PW, Buydens LM, (2011) Opening the kernel of kernel partial least squares and support vector machines. Analytical Chimica Acta 705: 123 134.
    • (2011) Analytical Chimica Acta , vol.705 , pp. 123
    • Postma, G.J.1    Krooshof, P.W.2    Buydens, L.M.3
  • 18
    • 54149084585 scopus 로고    scopus 로고
    • Multiple sclerosis
    • Compston A, Coles A, (2008) Multiple sclerosis. Lancet 372: 1502 1517.
    • (2008) Lancet , vol.372 , pp. 1502
    • Compston, A.1    Coles, A.2
  • 19
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using Support Vector Machine
    • Guyon I, Weston J, Barnhill S, (2002) Gene selection for cancer classification using Support Vector Machine. Machine Learning 46: 389 422.
    • (2002) Machine Learning , vol.46 , pp. 389
    • Guyon, I.1    Weston, J.2    Barnhill, S.3
  • 20
    • 84862027865 scopus 로고    scopus 로고
    • Kernel-based Data Fusion for Machine Learning. Methods and applications in Bioinformatics and Text mining
    • Yu S, Tranchevent LC, De Moor B, Moreau Y, (2011) Kernel-based Data Fusion for Machine Learning. Methods and applications in Bioinformatics and Text mining. Berlin Springer.
    • (2011) Berlin Springer
    • Yu, S.1    Tranchevent, L.C.2    De Moor, B.3    Moreau, Y.4
  • 21
    • 84862020961 scopus 로고    scopus 로고
    • Advanced Chemistry Development, Inc, Toronto On, Canada
    • ACD/1D HNMR Manager v, Available:
    • ACD/1D HNMR Manager v (2003) Advanced Chemistry Development, Inc, Toronto On, Canada. Available: www.acdlabs.com. Accessed 2011 Dec 15.
    • (2003)
  • 23
    • 4444351752 scopus 로고    scopus 로고
    • Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data
    • Tomasi G, van den Berg F, Andersson C, (2004) Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data. Journal of Chemometrics 18: 231 241.
    • (2004) Journal of Chemometrics , vol.18 , pp. 231
    • Tomasi, G.1    van den Berg, F.2    Andersson, C.3
  • 24
    • 43949089850 scopus 로고    scopus 로고
    • NMR-based characterization of metabolic alterations in hypertension using an adaptive, intelligent binning algorithm
    • de Meyer T, Sinnaeve D, Van Gasse B, Tsiporkova E, Rietzschel ER, (2008) NMR-based characterization of metabolic alterations in hypertension using an adaptive, intelligent binning algorithm. Analytical Chemistry 80: 3783 3790.
    • (2008) Analytical Chemistry , vol.80 , pp. 3783
    • de Meyer, T.1    Sinnaeve, D.2    van Gasse, B.3    Tsiporkova, E.4    Rietzschel, E.R.5
  • 26
    • 33750475205 scopus 로고    scopus 로고
    • Metabolomics-based systems biology and personalized medicine: moving towards n = 1 clinical trials?
    • van der Greef J, Hankemeier T, McBurney RN, (2006) Metabolomics-based systems biology and personalized medicine: moving towards n = 1 clinical trials? Pharmacogenomics 7: 1087 1094.
    • (2006) Pharmacogenomics , vol.7 , pp. 1087
    • van der Greef, J.1    Hankemeier, T.2    McBurney, R.N.3
  • 27
    • 70449354965 scopus 로고    scopus 로고
    • Analytical Error Reduction Using Single Point Calibration for Accurate and Precise Metabolomic Phenotyping
    • van der Kloet FM, Verheij ER, Bobeldijk I, Jellema RH, (2009) Analytical Error Reduction Using Single Point Calibration for Accurate and Precise Metabolomic Phenotyping. Journal of Proteome Research 8: 5132 5141.
    • (2009) Journal of Proteome Research , vol.8 , pp. 5132
    • van der Kloet, F.M.1    Verheij, E.R.2    Bobeldijk, I.3    Jellema, R.H.4
  • 28
    • 18744376591 scopus 로고    scopus 로고
    • High breakdown estimators for principal components: the projection-pursuit approach revisited
    • Croux C, Ruiz-Gazen A, (2005) High breakdown estimators for principal components: the projection-pursuit approach revisited. Journal of Multivariate Analysis 95: 206 226.
    • (2005) Journal of Multivariate Analysis , vol.95 , pp. 206
    • Croux, C.1    Ruiz-Gazen, A.2
  • 30
    • 33746909835 scopus 로고    scopus 로고
    • Assessing the performance of statistical validation tools for megavariate metabolomics data
    • Rubingh CM, Bijlsma S, Derks EPPA, Bobeldijk I, Verheij ER, (2006) Assessing the performance of statistical validation tools for megavariate metabolomics data. Metabolomics 2: 53 61.
    • (2006) Metabolomics , vol.2 , pp. 53
    • Rubingh, C.M.1    Bijlsma, S.2    Derks, E.P.P.A.3    Bobeldijk, I.4    Verheij, E.R.5
  • 31
    • 0036589313 scopus 로고    scopus 로고
    • Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection
    • Golbraikh A, Tropsha A, (2002) Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection. Journal of Computer-Aided Molecular Design 16: 357 369.
    • (2002) Journal of Computer-Aided Molecular Design , vol.16 , pp. 357
    • Golbraikh, A.1    Tropsha, A.2
  • 34
    • 84862015294 scopus 로고
    • Computer Aided Design of Experiments
    • Kennard RW, (1968) Computer Aided Design of Experiments. Technometrics 10: 423-&.
    • (1968) Technometrics , vol.10 , pp. 423
    • Kennard, R.W.1
  • 38
    • 32444444605 scopus 로고    scopus 로고
    • About kernel latent variable approach and SVM
    • Czekaj T, Wu W, Walczak B, (2005) About kernel latent variable approach and SVM. Journal of Chemometrics 19: 341 354.
    • (2005) Journal of Chemometrics , vol.19 , pp. 341
    • Czekaj, T.1    Wu, W.2    Walczak, B.3
  • 39
    • 0003798635 scopus 로고    scopus 로고
    • An introduction to support vector machines and other kernel-based learning methods: The University of Cambridge
    • Cristianini N, Shawe-Taylor J, (2000) An introduction to support vector machines and other kernel-based learning methods: The University of Cambridge.
    • (2000)
    • Cristianini, N.1    Shawe-Taylor, J.2
  • 45
    • 84862026037 scopus 로고    scopus 로고
    • Although classification performance of a classifier is influenced by the natural difficulty of the studied problem, however there are possibilities that the performance of a classifier is degraded because of small training cases
    • Sord M, Zeng Q, (2005) Although classification performance of a classifier is influenced by the natural difficulty of the studied problem, however there are possibilities that the performance of a classifier is degraded because of small training cases. ISBMDA LNBI 3745: 193 201.
    • (2005) ISBMDA LNBI , vol.3745 , pp. 193
    • Sord, M.1    Zeng, Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.