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Volumn 2, Issue 2, 2006, Pages 53-61

Assessing the performance of statistical validation tools for megavariate metabolomics data

Author keywords

Cross validation; Jack knife; Megavariate data; Metabolomics; Permutation test; PLS DA; Predictability

Indexed keywords


EID: 33746909835     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-006-0022-6     Document Type: Article
Times cited : (138)

References (33)
  • 1
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise C., McLachlan G.J. (2002). Selection bias in gene extraction on the basis of microarray gene-expression data. PNAS 99:6562-6566
    • (2002) PNAS , vol.99 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 2
    • 1342330535 scopus 로고    scopus 로고
    • Is cross-validation valid for small-sample microarray classification?
    • Braga-Neto U.M., Dougherty E.R. (2004). Is cross-validation valid for small-sample microarray classification? Bioinformatics 20:374-380
    • (2004) Bioinformatics , vol.20 , pp. 374-380
    • Braga-Neto, U.M.1    Dougherty, E.R.2
  • 3
    • 0037350844 scopus 로고    scopus 로고
    • Partial least squares for discrimination
    • Barker M., Rayens W. (2003). Partial least squares for discrimination. J. Chemometrics 17:166-173
    • (2003) J. Chemometrics , vol.17 , pp. 166-173
    • Barker, M.1    Rayens, W.2
  • 5
    • 0033661648 scopus 로고    scopus 로고
    • Estimating reaction time constants form a two-step reaction: Comparison between two-way and three-way methods
    • Bijlsma S., Smilde A.K. (2000). Estimating reaction time constants form a two-step reaction: Comparison between two-way and three-way methods. J. Chemometrics 14:541-560
    • (2000) J. Chemometrics , vol.14 , pp. 541-560
    • Bijlsma, S.1    Smilde, A.K.2
  • 10
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics - The link between genotypes and phenotypes
    • Fiehn O. (2002). Metabolomics - the link between genotypes and phenotypes. Plant Mol. Biol. 48:155-171
    • (2002) Plant Mol. Biol. , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 11
    • 11144325691 scopus 로고
    • Partial least-squares regression: A tutorial
    • Geladi P., Kowalski B.R. (1986). Partial least-squares regression: A tutorial. Anal. Chem. Acta 185:1-17
    • (1986) Anal. Chem. Acta , vol.185 , pp. 1-17
    • Geladi, P.1    Kowalski, B.R.2
  • 13
    • 0035117034 scopus 로고    scopus 로고
    • Modelling of spectroscopic batch process data using grey models to incorporate external information
    • Gurden S.P., Westerhuis J.A., Bijlsma S., Smilde A.K. (2001). Modelling of spectroscopic batch process data using grey models to incorporate external information. J. Chemometrics 15:101-121
    • (2001) J. Chemometrics , vol.15 , pp. 101-121
    • Gurden, S.P.1    Westerhuis, J.A.2    Bijlsma, S.3    Smilde, A.K.4
  • 14
    • 1542413503 scopus 로고    scopus 로고
    • The Elements of Statistical Learning: Data Mining, Inference and Prediction
    • Hastie, T., Tibshirani, R., Friedman, J. (2001). The Elements of statistical learning: Data mining, inference and prediction. Springer Series in Statistics. 533 p; p214-216
    • (2001) Springer Series in Statistics , vol.533
    • Hastie, T.1    Tibshirani, R.2    Friedman, J.3
  • 15
    • 0242611617 scopus 로고    scopus 로고
    • Metabolite profiling in rat uring by liquid chromatography/electrospray ion trap mass spectrometry. Application to the study of heavy metal toxcity
    • Lafaye A., Junot C., Ramounet-Le Gall B., Fritsch P., Tabet J.C., Ezan E. (2003). Metabolite profiling in rat uring by liquid chromatography/ electrospray ion trap mass spectrometry. Application to the study of heavy metal toxcity. Rapid Commun. Mass Spectrometry 17:2541-2549
    • (2003) Rapid Commun. Mass Spectrometry , vol.17 , pp. 2541-2549
    • Lafaye, A.1    Junot, C.2    Ramounet-Le Gall, B.3    Fritsch, P.4    Tabet, J.C.5    Ezan, E.6
  • 19
    • 0033636234 scopus 로고    scopus 로고
    • Modified Jack-knife estimation of parameter uncertainty in bilinear modelling by partial least squares regression (PLSR)
    • Martens H., Martens M. (2000). Modified Jack-knife estimation of parameter uncertainty in bilinear modelling by partial least squares regression (PLSR). Food Qual. Pref. 11:5-16
    • (2000) Food Qual. Pref. , vol.11 , pp. 5-16
    • Martens, H.1    Martens, M.2
  • 24
    • 0041845178 scopus 로고    scopus 로고
    • Metabonomic analysis of mouse uring by liquid-chromatography-time of flight mass aspectrometry (LC-TOCMS): Detection of strain, diurnal and gender differences
    • Plumb R., Granger J., Stumpf C., Wilson I.D., Evans J.A. and Lenz E.M. (2003). Metabonomic analysis of mouse uring by liquid-chromatography-time of flight mass aspectrometry (LC-TOCMS): detection of strain, diurnal and gender differences. Analyst 128:819-823
    • (2003) Analyst , vol.128 , pp. 819-823
    • Plumb, R.1    Granger, J.2    Stumpf, C.3    Wilson, I.D.4    Evans, J.A.5    Lenz, E.M.6
  • 25
    • 27844521293 scopus 로고    scopus 로고
    • A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics
    • Schäfer J., Strimmer K. (2005). A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics. Stat. Appl. Genet. Mol. Biol. 4:1-29
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4 , pp. 1-29
    • Schäfer, J.1    Strimmer, K.2
  • 27
    • 0000629975 scopus 로고
    • Cross validatory choice and assessment of statistical predictions
    • Stone M. (1974). Cross validatory choice and assessment of statistical predictions. J. R. Stat. Soc. Ser. B (Methodological) 36:111-147
    • (1974) J. R. Stat. Soc. Ser. B (Methodological) , vol.36 , pp. 111-147
    • Stone, M.1
  • 28
    • 2342533421 scopus 로고    scopus 로고
    • Class prediction by nearest shrunken centroids, with applications to DNO microarrays
    • Thibshirani R., Hastie T., Narasimhan B., Chu G. (2003). Class prediction by nearest shrunken centroids, with applications to DNO microarrays. Stat. Sci. 18:104-117
    • (2003) Stat. Sci. , vol.18 , pp. 104-117
    • Thibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 29
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene exxpression
    • Thibshirani R., Hastie T., Narasimhan B., Chu G. (2002). Diagnosis of multiple cancer types by shrunken centroids of gene exxpression. PNAS 99:6567-6572
    • (2002) PNAS , vol.99 , pp. 6567-6572
    • Thibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 32
    • 0000856729 scopus 로고
    • Source contributions to ambient aerosol calculated by discriminant partial least squares regression (PLS)
    • Vong R., Geladi P., Wold S., Esbensen K. (1988). Source contributions to ambient aerosol calculated by discriminant partial least squares regression (PLS). J. Chemometrics 2:281-296
    • (1988) J. Chemometrics , vol.2 , pp. 281-296
    • Vong, R.1    Geladi, P.2    Wold, S.3    Esbensen, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.