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Volumn 318, Issue 12, 2012, Pages 1448-1455

Chromatin organization - The 30nm fiber

Author keywords

Chromatin; Chromatin fiber; Chromosome; Histone; Nucleosome; Nucleus

Indexed keywords

DNA;

EID: 84861956987     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2012.02.014     Document Type: Review
Times cited : (112)

References (56)
  • 1
    • 0028935863 scopus 로고
    • Chromatin higher order structure: chasing a mirage?
    • van Holde K., Zlatanova J. Chromatin higher order structure: chasing a mirage?. J. Biol. Chem. 1995, 270:8373-8376.
    • (1995) J. Biol. Chem. , vol.270 , pp. 8373-8376
    • van Holde, K.1    Zlatanova, J.2
  • 2
    • 77954819238 scopus 로고    scopus 로고
    • Chromatin structure: does the 30-nm fibre exist in vivo?
    • Maeshima K., Hihara S., Eltsov M. Chromatin structure: does the 30-nm fibre exist in vivo?. Curr. Opin. Cell Biol. 2010, 22:291-297.
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 291-297
    • Maeshima, K.1    Hihara, S.2    Eltsov, M.3
  • 4
    • 0037559830 scopus 로고
    • Chromosome fibers from an interphase nucleus
    • Gall J. Chromosome fibers from an interphase nucleus. Science 1963, 139:120-121.
    • (1963) Science , vol.139 , pp. 120-121
    • Gall, J.1
  • 5
    • 0013987570 scopus 로고
    • Chromosome fibers studied by a spreading technique
    • Gall J.G. Chromosome fibers studied by a spreading technique. Chromosoma 1966, 20:221-233.
    • (1966) Chromosoma , vol.20 , pp. 221-233
    • Gall, J.G.1
  • 6
    • 0025289123 scopus 로고
    • Ultrastructural preservation of nuclei and chromatin: improvement with low-temperature methods
    • Horowitz R.A., Giannasca P.J., Woodcock C.L. Ultrastructural preservation of nuclei and chromatin: improvement with low-temperature methods. J. Microsc. 1990, 157:205-224.
    • (1990) J. Microsc. , vol.157 , pp. 205-224
    • Horowitz, R.A.1    Giannasca, P.J.2    Woodcock, C.L.3
  • 7
    • 0028019457 scopus 로고
    • Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure
    • Belmont A.S., Bruce K. Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure. J. Cell Biol. 1994, 127:287-302.
    • (1994) J. Cell Biol. , vol.127 , pp. 287-302
    • Belmont, A.S.1    Bruce, K.2
  • 8
    • 0024319521 scopus 로고
    • Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro
    • Belmont A.S., Braunfeld M.B., Sedat J.W., Agard D.A. Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro. Chromosoma 1989, 98:129-143.
    • (1989) Chromosoma , vol.98 , pp. 129-143
    • Belmont, A.S.1    Braunfeld, M.B.2    Sedat, J.W.3    Agard, D.A.4
  • 10
    • 0022726854 scopus 로고
    • Cryo-electron microscopy of vitrified chromosomes in situ
    • McDowall A.W., Smith J.M., Dubochet J. Cryo-electron microscopy of vitrified chromosomes in situ. EMBO J. 1986, 5:1395-1402.
    • (1986) EMBO J. , vol.5 , pp. 1395-1402
    • McDowall, A.W.1    Smith, J.M.2    Dubochet, J.3
  • 11
    • 58149401194 scopus 로고    scopus 로고
    • Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
    • Eltsov M., Maclellan K.M., Maeshima K., Frangakis A.S., Dubochet J. Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:19732-19737.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 19732-19737
    • Eltsov, M.1    Maclellan, K.M.2    Maeshima, K.3    Frangakis, A.S.4    Dubochet, J.5
  • 13
    • 1842861622 scopus 로고    scopus 로고
    • Keeping fingers crossed: heterochromatin spreading through interdigitation of nucleosome arrays
    • Grigoryev S.A. Keeping fingers crossed: heterochromatin spreading through interdigitation of nucleosome arrays. FEBS Lett. 2004, 564:4-8.
    • (2004) FEBS Lett. , vol.564 , pp. 4-8
    • Grigoryev, S.A.1
  • 14
    • 84859421494 scopus 로고    scopus 로고
    • Human mitotic chromosomes consist predominantely of irregularly folded nucleosome fibers without a 30-nm chromatin structure
    • (Feb. 17 2012) [Electronic publication ahead of print], doi: doi:10.1038/emboj.2012.35
    • Y. Nishino, M. Eltsov, Y. Joti, K. Ito, H. Takata, Y. Takahashi, S. Hihara, A. S. Frangakis, N. Imamoto, T. Ishikawa, and K. Maeshima, Human mitotic chromosomes consist predominantely of irregularly folded nucleosome fibers without a 30-nm chromatin structure, Embo J. (Feb. 17 2012) [Electronic publication ahead of print], doi:. doi:10.1038/emboj.2012.35.
    • Embo J.
    • Nishino, Y.1    Eltsov, M.2    Joti, Y.3    Ito, K.4    Takata, H.5    Takahashi, Y.6    Hihara, S.7    Frangakis, A.S.8    Imamoto, N.9    Ishikawa, T.10    Maeshima, K.11
  • 15
    • 0022650876 scopus 로고
    • Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length
    • Williams S.P., Athey B.D., Muglia L.J., Schappe R.S., Gough A.H., Langmore J.P. Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. Biophys. J. 1986, 49:233-248.
    • (1986) Biophys. J. , vol.49 , pp. 233-248
    • Williams, S.P.1    Athey, B.D.2    Muglia, L.J.3    Schappe, R.S.4    Gough, A.H.5    Langmore, J.P.6
  • 16
    • 0028207905 scopus 로고
    • Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length
    • Woodcock C.L. Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length. J. Cell Biol. 1994, 125:11-19.
    • (1994) J. Cell Biol. , vol.125 , pp. 11-19
    • Woodcock, C.L.1
  • 17
    • 0028221098 scopus 로고
    • The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon
    • Horowitz R.A., Agard D.A., Sedat J.W., Woodcock C.L. The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon. J. Cell Biol. 1994, 125:1-10.
    • (1994) J. Cell Biol. , vol.125 , pp. 1-10
    • Horowitz, R.A.1    Agard, D.A.2    Sedat, J.W.3    Woodcock, C.L.4
  • 18
    • 80054774248 scopus 로고    scopus 로고
    • Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei
    • Scheffer M.P., Eltsov M., Frangakis A.S. Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:16992-16997.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 16992-16997
    • Scheffer, M.P.1    Eltsov, M.2    Frangakis, A.S.3
  • 19
    • 77956216933 scopus 로고    scopus 로고
    • In vivo chromatin organization of mouse rod photoreceptors correlates with histone modifications
    • Kizilyaprak C., Spehner D., Devys D., Schultz P. In vivo chromatin organization of mouse rod photoreceptors correlates with histone modifications. PLoS One 2010, 5:e11039.
    • (2010) PLoS One , vol.5
    • Kizilyaprak, C.1    Spehner, D.2    Devys, D.3    Schultz, P.4
  • 20
    • 0018581187 scopus 로고
    • Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
    • Thoma F., Koller T., Klug A. Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J. Cell Biol. 1979, 83:403-427.
    • (1979) J. Cell Biol. , vol.83 , pp. 403-427
    • Thoma, F.1    Koller, T.2    Klug, A.3
  • 21
    • 0027517831 scopus 로고
    • A chromatin folding model that incorporates linker variability generates fibers resembling the native structures
    • Woodcock C.L., Grigoryev S.A., Horowitz R.A., Whitaker N. A chromatin folding model that incorporates linker variability generates fibers resembling the native structures. Proc. Natl. Acad. Sci. U. S. A. 1993, 90:9021-9025.
    • (1993) Proc. Natl. Acad. Sci. U. S. A. , vol.90 , pp. 9021-9025
    • Woodcock, C.L.1    Grigoryev, S.A.2    Horowitz, R.A.3    Whitaker, N.4
  • 24
    • 84860564636 scopus 로고    scopus 로고
    • Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro
    • Scheffer M.P., Eltsov M., Bednar J., Frangakis A.S. Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro. J. Struct. Biol. 2012.
    • (2012) J. Struct. Biol.
    • Scheffer, M.P.1    Eltsov, M.2    Bednar, J.3    Frangakis, A.S.4
  • 26
    • 0023447159 scopus 로고
    • Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy
    • Gerchman S.E., Ramakrishnan V. Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy. Proc. Natl. Acad. Sci. U. S. A. 1987, 84:7802-7806.
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 7802-7806
    • Gerchman, S.E.1    Ramakrishnan, V.2
  • 27
    • 0021250785 scopus 로고
    • The higher-order structure of chromatin: evidence for a helical ribbon arrangement
    • Woodcock C.L., Frado L.L., Rattner J.B. The higher-order structure of chromatin: evidence for a helical ribbon arrangement. J. Cell Biol. 1984, 99:42-52.
    • (1984) J. Cell Biol. , vol.99 , pp. 42-52
    • Woodcock, C.L.1    Frado, L.L.2    Rattner, J.B.3
  • 28
    • 0033067219 scopus 로고    scopus 로고
    • Assembly of defined nucleosomal and chromatin arrays from pure components
    • Carruthers L.M., Tse C., Walker K.P., Hansen J.C. Assembly of defined nucleosomal and chromatin arrays from pure components. Methods Enzymol. 1999, 304:19-35.
    • (1999) Methods Enzymol. , vol.304 , pp. 19-35
    • Carruthers, L.M.1    Tse, C.2    Walker, K.P.3    Hansen, J.C.4
  • 29
    • 0022234831 scopus 로고
    • Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure
    • Simpson R.T., Thoma F., Brubaker J.M. Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure. Cell 1985, 42:799-808.
    • (1985) Cell , vol.42 , pp. 799-808
    • Simpson, R.T.1    Thoma, F.2    Brubaker, J.M.3
  • 30
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
    • Lowary P.T., Widom J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. JMB 1998, 276:19-42.
    • (1998) JMB , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 31
    • 84857340459 scopus 로고    scopus 로고
    • Towards convergence of experimental studies and theoretical modeling of the chromatin fiber
    • 5193-5191
    • Schlick T., Hayes J., Grigoryev S. Towards convergence of experimental studies and theoretical modeling of the chromatin fiber. J. Biol. Chem. 2012, 287. 5193-5191.
    • (2012) J. Biol. Chem. , vol.287
    • Schlick, T.1    Hayes, J.2    Grigoryev, S.3
  • 32
    • 0036089388 scopus 로고    scopus 로고
    • Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions
    • Hansen J.C. Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions. Annu. Rev. Biophys. Biomol. Struct. 2002, 31:361-392.
    • (2002) Annu. Rev. Biophys. Biomol. Struct. , vol.31 , pp. 361-392
    • Hansen, J.C.1
  • 33
    • 11844299709 scopus 로고    scopus 로고
    • A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone
    • Huynh V.A., Robinson P.J., Rhodes D. A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J. Mol. Biol. 2005, 345:957-968.
    • (2005) J. Mol. Biol. , vol.345 , pp. 957-968
    • Huynh, V.A.1    Robinson, P.J.2    Rhodes, D.3
  • 35
    • 33646242052 scopus 로고    scopus 로고
    • EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure
    • Robinson P.J., Fairall L., Huynh V.A., Rhodes D. EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:6506-6511.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 6506-6511
    • Robinson, P.J.1    Fairall, L.2    Huynh, V.A.3    Rhodes, D.4
  • 36
    • 39149106101 scopus 로고    scopus 로고
    • Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn
    • Ghirlando R., Felsenfeld G. Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn. J. Mol. Biol. 2008, 376:1417-1425.
    • (2008) J. Mol. Biol. , vol.376 , pp. 1417-1425
    • Ghirlando, R.1    Felsenfeld, G.2
  • 37
    • 33847106524 scopus 로고    scopus 로고
    • Higher-order structures of chromatin: the elusive 30 nm fiber
    • Tremethick D.J. Higher-order structures of chromatin: the elusive 30 nm fiber. Cell 2007, 128:651-654.
    • (2007) Cell , vol.128 , pp. 651-654
    • Tremethick, D.J.1
  • 38
    • 0000878535 scopus 로고
    • Solenoidal model for superstructure in chromatin
    • Finch J.T., Klug A. Solenoidal model for superstructure in chromatin. Proc. Natl. Acad. Sci. U. S. A. 1976, 73:1897-1901.
    • (1976) Proc. Natl. Acad. Sci. U. S. A. , vol.73 , pp. 1897-1901
    • Finch, J.T.1    Klug, A.2
  • 40
    • 0345698703 scopus 로고    scopus 로고
    • Interdigitated solenoid model for compact chromatin fibers
    • Daban J.R., Bermudez A. Interdigitated solenoid model for compact chromatin fibers. Biochemistry 1998, 37:4299-4304.
    • (1998) Biochemistry , vol.37 , pp. 4299-4304
    • Daban, J.R.1    Bermudez, A.2
  • 41
    • 0037436410 scopus 로고    scopus 로고
    • Chromatin fiber folding: requirement for the histone H4 N-terminal tail
    • Dorigo B., Schalch T., Bystricky K., Richmond T.J. Chromatin fiber folding: requirement for the histone H4 N-terminal tail. J. Mol. Biol. 2003, 327:85-96.
    • (2003) J. Mol. Biol. , vol.327 , pp. 85-96
    • Dorigo, B.1    Schalch, T.2    Bystricky, K.3    Richmond, T.J.4
  • 42
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8A resolution
    • Luger K., Mader A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8A resolution. Nature 1997, 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 44
    • 21844436803 scopus 로고    scopus 로고
    • X-ray structure of a tetranucleosome and its implications for the chromatin fibre
    • Schalch T., Duda S., Sargent D.F., Richmond T.J. X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 2005, 436:138-141.
    • (2005) Nature , vol.436 , pp. 138-141
    • Schalch, T.1    Duda, S.2    Sargent, D.F.3    Richmond, T.J.4
  • 45
    • 33744831161 scopus 로고    scopus 로고
    • Structure of the '30nm' chromatin fibre: a key role for the linker histone
    • Robinson P.J., Rhodes D. Structure of the '30nm' chromatin fibre: a key role for the linker histone. Curr. Opin. Struct. Biol. 2006, 16:336-343.
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 336-343
    • Robinson, P.J.1    Rhodes, D.2
  • 46
    • 36749082174 scopus 로고    scopus 로고
    • An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length
    • Wong H., Victor J.M., Mozziconacci J. An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length. PLoS One 2007, 2:e877.
    • (2007) PLoS One , vol.2
    • Wong, H.1    Victor, J.M.2    Mozziconacci, J.3
  • 47
    • 48249103503 scopus 로고    scopus 로고
    • Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure
    • Routh A., Sandin S., Rhodes D. Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:8872-8877.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 8872-8877
    • Routh, A.1    Sandin, S.2    Rhodes, D.3
  • 48
    • 0034602688 scopus 로고    scopus 로고
    • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure
    • Cui Y., Bustamante C. Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure. Proc. Natl. Acad. Sci. U. S. A. 2000, 97:127-132.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 127-132
    • Cui, Y.1    Bustamante, C.2
  • 49
    • 66149144002 scopus 로고    scopus 로고
    • Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber
    • Kruithof M., Chien F.T., Routh A., Logie C., Rhodes D., van Noort J. Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber. Nat. Struct. Mol. Biol. 2009, 16:534-540.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 534-540
    • Kruithof, M.1    Chien, F.T.2    Routh, A.3    Logie, C.4    Rhodes, D.5    van Noort, J.6
  • 50
    • 77951896611 scopus 로고    scopus 로고
    • Chromatin fiber dynamics under tension and torsion
    • Lavelle C., Victor J.M., Zlatanova J. Chromatin fiber dynamics under tension and torsion. Int. J. Mol. Sci. 2010, 11:1557-1579.
    • (2010) Int. J. Mol. Sci. , vol.11 , pp. 1557-1579
    • Lavelle, C.1    Victor, J.M.2    Zlatanova, J.3
  • 51
    • 80053369330 scopus 로고    scopus 로고
    • The Effect of Linker Histone's Nucleosome Binding Affinity on Chromatin Unfolding Mechanisms
    • Collepardo-Guevara R., Schlick T. The Effect of Linker Histone's Nucleosome Binding Affinity on Chromatin Unfolding Mechanisms. Biophys. J. 2011, 101:1670-1680.
    • (2011) Biophys. J. , vol.101 , pp. 1670-1680
    • Collepardo-Guevara, R.1    Schlick, T.2
  • 52
    • 35649021219 scopus 로고    scopus 로고
    • Computational modeling of the chromatin fiber
    • Langowski J., Heermann D.W. Computational modeling of the chromatin fiber. Semin. Cell Dev. Biol. 2007, 18:659-667.
    • (2007) Semin. Cell Dev. Biol. , vol.18 , pp. 659-667
    • Langowski, J.1    Heermann, D.W.2
  • 56
    • 79957864084 scopus 로고    scopus 로고
    • Chromatin globules: a common motif of higher order chromosome structure?
    • Sanyal A., Bau D., Marti-Renom M.A., Dekker J. Chromatin globules: a common motif of higher order chromosome structure?. Curr. Opin. Cell Biol. 2011, 23:325-331.
    • (2011) Curr. Opin. Cell Biol. , vol.23 , pp. 325-331
    • Sanyal, A.1    Bau, D.2    Marti-Renom, M.A.3    Dekker, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.