-
1
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld G, Groudine M (2003) Controlling the double helix. Nature 421:448-453.
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
2
-
-
0037992395
-
The structure of DNA in the nucleosome core
-
Richmond TJ, Davey CA (2003) The structure of DNA in the nucleosome core. Nature 423:145-150.
-
(2003)
Nature
, vol.423
, pp. 145-150
-
-
Richmond, T.J.1
Davey, C.A.2
-
4
-
-
17044365726
-
Nucleosome and chromatin fiberdynamics
-
Luger K, Hansen JC (2005) Nucleosome and chromatin fiberdynamics. Curr Opin Struct Biol 15:188-196.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 188-196
-
-
Luger, K.1
Hansen, J.C.2
-
5
-
-
33847106524
-
Higher-order structures of chromatin: The elusive 30 nm fiber
-
Tremethick DJ (2007) Higher-order structures of chromatin: The elusive 30 nm fiber. Cell 128:651-654.
-
(2007)
Cell
, vol.128
, pp. 651-654
-
-
Tremethick, D.J.1
-
6
-
-
35648930403
-
Chromatin fiber structure: Where is the problem now?
-
DOI 10.1016/j.semcdb.2007.08.005, PII S1084952107001206, Membrane Lipid Microdomains: Roles in Signalling and Disease and 3D Chromatin
-
van Holde K, Zlatanova J (2007) Chromatin fiber structure: Where is the problem now? Semin Cell Dev Biol 18:651-658. (Pubitemid 350026429)
-
(2007)
Seminars in Cell and Developmental Biology
, vol.18
, Issue.5
, pp. 651-658
-
-
Van Holde, K.1
Zlatanova, J.2
-
7
-
-
0021250785
-
The higher-order structure of chromatin: Evidence for a helical ribbon arrangement
-
Woodcock CL, Frado LL, Rattner JB (1984) The higher-order structure of chromatin: Evidence for a helical ribbon arrangement. J Cell Biol 99:42-52.
-
(1984)
J Cell Biol
, vol.99
, pp. 42-52
-
-
Woodcock, C.L.1
Frado, L.L.2
Rattner, J.B.3
-
8
-
-
0027960444
-
Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy
-
Leuba SH, et al. (1994) Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy. Proc Natl Acad Sci USA 91:11621-11625.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 11621-11625
-
-
Leuba, S.H.1
-
9
-
-
9444297879
-
Nucleosome arrays reveal the two-start organization of the chromatin fiber
-
DOI 10.1126/science.1103124
-
Dorigo B, et al. (2004) Nucleosome arrays reveal the two-start organization of the chromatin fiber. Science 306:1571-1573. (Pubitemid 39564956)
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1571-1573
-
-
Dorigo, B.1
Schalch, T.2
Kulangara, A.3
Duda, S.4
Schroeder, R.R.5
Richmond, T.J.6
-
10
-
-
21844436803
-
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
-
DOI 10.1038/nature03686
-
Schalch T, Duda S, Sargent DF, Richmond TJ (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436:138-141. (Pubitemid 40966200)
-
(2005)
Nature
, vol.436
, Issue.7047
, pp. 138-141
-
-
Schalch, T.1
Duda, S.2
Sargent, D.F.3
Richmond, T.J.4
-
11
-
-
0028221098
-
The three-dimensional architecture of chromatin in situ: Electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon
-
Horowitz RA, Agard DA, Sedat JW, Woodcock CL (1994) The three-dimensional architecture of chromatin in situ: Electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon. J Cell Biol 125:1-10.
-
(1994)
J Cell Biol
, vol.125
, pp. 1-10
-
-
Horowitz, R.A.1
Agard, D.A.2
Sedat, J.W.3
Woodcock, C.L.4
-
12
-
-
0022650876
-
Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length
-
Williams SP, et al. (1986) Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. Biophys J 49:233-248.
-
(1986)
Biophys J
, vol.49
, pp. 233-248
-
-
Williams, S.P.1
-
13
-
-
36749082174
-
An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length
-
Wong H, Victor JM, Mozziconacci J (2007) An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length. PLoS ONE 2:e877.
-
(2007)
PLoS ONE
, vol.2
-
-
Wong, H.1
Victor, J.M.2
Mozziconacci, J.3
-
14
-
-
0018581187
-
Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
-
DOI 10.1083/jcb.83.2.403
-
Thoma F, Koller T, Klug A (1979) Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J Cell Biol 83:403-427. (Pubitemid 10205723)
-
(1979)
Journal of Cell Biology
, vol.83
, Issue.2 I
, pp. 403-427
-
-
Thoma, F.1
Koller, Th.2
Klug, A.3
-
15
-
-
66149144002
-
Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber
-
Kruithof M, et al. (2009) Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber. Nat Struct Mol Biol 16:534-540.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 534-540
-
-
Kruithof, M.1
-
16
-
-
0039591501
-
Physical constraints in the condensation of eukaryotic chromosomes. Local concentration of DNA versus linear packing ratio in higher order chromatin structures
-
Daban JR (2000) Physical constraints in the condensation of eukaryotic chromosomes. Local concentration of DNA versus linear packing ratio in higher order chromatin structures. Biochemistry 39:3861-3866.
-
(2000)
Biochemistry
, vol.39
, pp. 3861-3866
-
-
Daban, J.R.1
-
17
-
-
33646242052
-
EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure
-
Robinson PJ, Fairall L, Huynh VA, Rhodes D (2006) EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure. Proc Natl Acad Sci USA 103:6506-6511.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6506-6511
-
-
Robinson, P.J.1
Fairall, L.2
Huynh, V.A.3
Rhodes, D.4
-
18
-
-
48249103503
-
Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure
-
Routh A, Sandin S, Rhodes D (2008) Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure. Proc Natl Acad Sci USA 105:8872-8877.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8872-8877
-
-
Routh, A.1
Sandin, S.2
Rhodes, D.3
-
19
-
-
48249116182
-
Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation
-
Kepper N, Foethke D, Stehr R, Wedemann G, Rippe K (2008) Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation. Biophys J 95:3692-3705.
-
(2008)
Biophys J
, vol.95
, pp. 3692-3705
-
-
Kepper, N.1
Foethke, D.2
Stehr, R.3
Wedemann, G.4
Rippe, K.5
-
20
-
-
56049111628
-
The effect of internucleosomal interaction on folding of the chromatin fiber
-
Stehr R, Kepper N, Rippe K, Wedemann G (2008) The effect of internucleosomal interaction on folding of the chromatin fiber. Biophys J 95:3677-3691.
-
(2008)
Biophys J
, vol.95
, pp. 3677-3691
-
-
Stehr, R.1
Kepper, N.2
Rippe, K.3
Wedemann, G.4
-
21
-
-
0035066656
-
DNA folding: Structural and mechanical properties of the two-angle model for chromatin
-
Schiessel H, Gelbart WM, Bruinsma R (2001) DNA folding: Structural and mechanical properties of the two-angle model for chromatin. Biophys J 80:1940-1956. (Pubitemid 32281009)
-
(2001)
Biophysical Journal
, vol.80
, Issue.4
, pp. 1940-1956
-
-
Schiessel, H.1
Gelbart, W.M.2
Bruinsma, R.3
-
22
-
-
0036099317
-
Computer simulation of the 30-nanometer chromatin fiber
-
Wedemann G, Langowski J (2002) Computer simulation of the 30-nanometer chromatin fiber. Biophys J 82:2847-2859. (Pubitemid 34547629)
-
(2002)
Biophysical Journal
, vol.82
, Issue.6
, pp. 2847-2859
-
-
Wedemann, G.1
Langowski, J.2
-
23
-
-
0032564478
-
Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin
-
DOI 10.1073/pnas.95.24.14173
-
Bednar J, et al. (1998) Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin. Proc Natl Acad Sci USA 95:14173-14178. (Pubitemid 28549340)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.24
, pp. 14173-14178
-
-
Bednar, J.1
Horowitz, R.A.2
Grigoryev, S.A.3
Carruthers, L.M.4
Hansen, J.C.5
Koster, A.J.6
Woodcock, C.L.7
-
25
-
-
0034614436
-
Pulling chromatin fibers: Computer simulations of direct physical micromanipulations
-
DOI 10.1006/jmbi.1999.3021
-
Katritch V, Bustamante C, Olson WK (2000) Pulling chromatin fibers: Computer simulations of direct physical micromanipulations. J Mol Biol 295:29-40. (Pubitemid 30025899)
-
(2000)
Journal of Molecular Biology
, vol.295
, Issue.1
, pp. 29-40
-
-
Katritch, V.1
Bustamante, C.2
Olson, W.K.3
-
26
-
-
0035093560
-
Computational modeling predicts the structure and dynamics of chromatin fiber
-
Beard DA, Schlick T (2001) Computational modeling predicts the structure and dynamics of chromatin fiber. Structure 9:105-114.
-
(2001)
Structure
, vol.9
, pp. 105-114
-
-
Beard, D.A.1
Schlick, T.2
-
28
-
-
33745738426
-
Flexible histone tails in a new mesoscopic oligonucleosome model
-
DOI 10.1529/biophysj.106.083006
-
Arya G, Zhang Q, Schlick T (2006) Flexible histone tails in a new mesoscopic oligonucleosome model. Biophys J 91:133-150. (Pubitemid 44015314)
-
(2006)
Biophysical Journal
, vol.91
, Issue.1
, pp. 133-150
-
-
Arya, G.1
Zhang, Q.2
Schlick, T.3
-
30
-
-
33947201778
-
The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays
-
DOI 10.1128/MCB.02181-06
-
Kan PY, Lu X, Hansen JC, Hayes JJ (2007) The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays. Mol Cell Biol 27:2084-2091. (Pubitemid 46418466)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.6
, pp. 2084-2091
-
-
Kan, P.-Y.1
Lu, X.2
Hansen, J.C.3
Hayes, J.J.4
-
31
-
-
65649099698
-
A tale of tails: How histone tails mediate chromatin compaction in different salt and linker histone environments
-
Arya G, Schlick T (2009) A tale of tails: How histone tails mediate chromatin compaction in different salt and linker histone environments. J Phys Chem A 113:4045-4059.
-
(2009)
J Phys Chem a
, vol.113
, pp. 4045-4059
-
-
Arya, G.1
Schlick, T.2
-
32
-
-
0032848160
-
Formaldehyde cross-linking for studying nucleosomal dynamics
-
Jackson V (1999) Formaldehyde cross-linking for studying nucleosomal dynamics. Methods 17:125-139.
-
(1999)
Methods
, vol.17
, pp. 125-139
-
-
Jackson, V.1
-
33
-
-
0032553013
-
Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: Mechanistic ramifications for higher-order chromatin folding
-
DOI 10.1021/bi981684e
-
Carruthers LM, Bednar J, Woodcock CL, Hansen JC (1998) Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: Mechanistic ramifications for higher-order chromatin folding. Biochemistry 37:14776-14787. (Pubitemid 28487585)
-
(1998)
Biochemistry
, vol.37
, Issue.42
, pp. 14776-14787
-
-
Carruthers, L.M.1
Bednar, J.2
Woodcock, C.L.3
Hansen, J.C.4
-
34
-
-
26644471508
-
The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays
-
DOI 10.1074/jbc.M507048200
-
Gordon F, Luger K, Hansen JC (2005) The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays. J Biol Chem 280:33701-33706. (Pubitemid 41443087)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.40
, pp. 33701-33706
-
-
Gordon, F.1
Luger, K.2
Hansen, J.C.3
-
35
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary PT, Widom J (1998) New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. JMB 276:19-42.
-
(1998)
JMB
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
36
-
-
0026517738
-
A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells
-
Widom J (1992) A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells. Proc Natl Acad Sci USA 89:1095-1099.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1095-1099
-
-
Widom, J.1
-
37
-
-
0027517831
-
A chromatin folding model that incorporates linker variability generates fibers resembling the native structures
-
DOI 10.1073/pnas.90.19.9021
-
Woodcock CL, Grigoryev SA, Horowitz RA, Whitaker N (1993) A chromatin folding model that incorporates linker variability generates fibers resembling the native structures. Proc Natl Acad Sci USA 90:9021-9025. (Pubitemid 23306443)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.19
, pp. 9021-9025
-
-
Woodcock, C.L.1
Grigoryev, S.A.2
Horowitz, R.A.3
Whitaker, N.4
-
38
-
-
11844299709
-
A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone
-
Huynh VA, Robinson PJ, Rhodes D (2005) A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J Mol Biol 345:957-968.
-
(2005)
J Mol Biol
, vol.345
, pp. 957-968
-
-
Huynh, V.A.1
Robinson, P.J.2
Rhodes, D.3
-
39
-
-
0014057375
-
Frictional coefficients of multisubunit structures. I. Theory
-
Bloomfield V, Dalton WO, Van Holde KE (1967) Frictional coefficients of multisubunit structures. I. Theory. Biopolymers 5:135-148.
-
(1967)
Biopolymers
, vol.5
, pp. 135-148
-
-
Bloomfield, V.1
Dalton, W.O.2
Van Holde, K.E.3
-
40
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260. (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
42
-
-
0029882454
-
Reversible oligonucleosome self-association: Dependence on divalent cations and core histone tail domains
-
DOI 10.1021/bi9525684
-
Schwarz PM, Felthauser A, Fletcher TM, Hansen JC (1996) Reversible oligonucleosome self-association: Dependence on divalent cations and core histone tail domains. Biochemistry 35:4009-4015. (Pubitemid 26113457)
-
(1996)
Biochemistry
, vol.35
, Issue.13
, pp. 4009-4015
-
-
Schwarz, P.M.1
Felthauser, A.2
Fletcher, T.M.3
Hansen, J.C.4
-
44
-
-
0345412722
-
Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy
-
Kepert JF, et al. (2003) Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy. Biophys J 85:4012-4022.
-
(2003)
Biophys J
, vol.85
, pp. 4012-4022
-
-
Kepert, J.F.1
-
45
-
-
32344434540
-
Chromatin compaction at the mononucleosome level
-
Toth K, Brun N, Langowski J (2006) Chromatin compaction at the mononucleosome level. Biochemistry 45:1591-1598.
-
(2006)
Biochemistry
, vol.45
, pp. 1591-1598
-
-
Toth, K.1
Brun, N.2
Langowski, J.3
-
46
-
-
33845197966
-
Chromatin structure can strongly facilitate enhancer action over a distance
-
Rubtsov MA, Polikanov YS, Bondarenko VA, Wang YH, Studitsky VM (2006) Chromatin structure can strongly facilitate enhancer action over a distance. Proc Natl Acad Sci USA 103:17690-17695.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17690-17695
-
-
Rubtsov, M.A.1
Polikanov, Y.S.2
Bondarenko, V.A.3
Wang, Y.H.4
Studitsky, V.M.5
-
47
-
-
39149106101
-
Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn
-
Ghirlando R, Felsenfeld G (2008) Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn. J Mol Biol 376:1417-1425.
-
(2008)
J Mol Biol
, vol.376
, pp. 1417-1425
-
-
Ghirlando, R.1
Felsenfeld, G.2
-
48
-
-
0026015325
-
Linker DNA bending induced by the core histones of chromatin
-
Yao J, Lowary PT, Widom J (1991) Linker DNA bending induced by the core histones of chromatin. Biochemistry 30:8408-8414.
-
(1991)
Biochemistry
, vol.30
, pp. 8408-8414
-
-
Yao, J.1
Lowary, P.T.2
Widom, J.3
-
49
-
-
0032555763
-
Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA
-
DOI 10.1006/jmbi.1998.1954
-
Butler P, Thomas J (1998) Dinucleosomes show compaction by ionic strength consistent with binding tolinker DNA. JMB 281:401-407. (Pubitemid 28372118)
-
(1998)
Journal of Molecular Biology
, vol.281
, Issue.3
, pp. 401-407
-
-
Butler, P.J.G.1
Thomas, J.O.2
-
50
-
-
44149119036
-
Spontaneous access to DNA target sites in folded chromatin fibers
-
Poirier MG, Bussiek M, Langowski J, Widom J (2008) Spontaneous access to DNA target sites in folded chromatin fibers. J Mol Biol 379:772-786.
-
(2008)
J Mol Biol
, vol.379
, pp. 772-786
-
-
Poirier, M.G.1
Bussiek, M.2
Langowski, J.3
Widom, J.4
-
51
-
-
33644800314
-
0 with the nucleosome of native chromatin in vivo
-
DOI 10.1038/nsmb1050, PII N1050
-
Brown DT, Izard T, Misteli T (2006) Mapping the interaction surface of linker histone H1(0) with the nucleosome of native chromatin in vivo. Nat Struct Mol Biol 13:250-255. (Pubitemid 43348511)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.3
, pp. 250-255
-
-
Brown, D.T.1
Izard, T.2
Misteli, T.3
-
52
-
-
1842861622
-
Keeping fingers crossed: Heterochromatin spreading through interdigitation of nucleosome arrays
-
Grigoryev SA (2004) Keeping fingers crossed: Heterochromatin spreading through interdigitation of nucleosome arrays. FEBS Lett 564:4-8.
-
(2004)
FEBS Lett
, vol.564
, pp. 4-8
-
-
Grigoryev, S.A.1
-
53
-
-
0035842899
-
Cation-chromatin binding as shown by ion microscopy is essential for the structural integrity of chromosomes
-
DOI 10.1083/jcb.200105026
-
Strick R, Strissel PL, Gavrilov K, Levi-Setti R (2001) Cation-chromatin binding as shown by ion microscopy is essential for the structural integrity of chromosomes. J Cell Biol 155:899-910. (Pubitemid 34286242)
-
(2001)
Journal of Cell Biology
, vol.155
, Issue.6
, pp. 899-910
-
-
Strick, R.1
Strissel, P.L.2
Gavrilov, K.3
Levi-Setti, R.4
-
54
-
-
58149401194
-
Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
-
Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J (2008) Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc Natl Acad Sci USA 105:19732-19737.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19732-19737
-
-
Eltsov, M.1
Maclellan, K.M.2
Maeshima, K.3
Frangakis, A.S.4
Dubochet, J.5
|