-
3
-
-
0034623787
-
-
10.1126/science.290.5498.1903
-
M. Shirts and V. S. Pande, Science 290, 1903 (2000). 10.1126/science.290. 5498.1903
-
(2000)
Science
, vol.290
, pp. 1903
-
-
Shirts, M.1
Pande, V.S.2
-
4
-
-
2342473866
-
-
references therein. 10.1088/0953-8984/16/15/R03
-
S. O. Nielsen, C. F. Lopez, G. Srinivas, and M. L. Klein, J. Phys.: Condens. Matter 16, R481 (2004), and references therein. 10.1088/0953-8984/16/ 15/R03
-
(2004)
J. Phys.: Condens. Matter
, vol.16
, pp. 481
-
-
Nielsen, S.O.1
Lopez, C.F.2
Srinivas, G.3
Klein, M.L.4
-
5
-
-
0037398844
-
-
references therein. 10.1016/S0959-440X(03)00030-7
-
T. Head-Gordon and S. Brown, Curr. Opin. Struct. Biol. 13, 160 (2003) and references therein. 10.1016/S0959-440X(03)00030-7
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 160
-
-
Head-Gordon, T.1
Brown, S.2
-
6
-
-
17044393884
-
-
references therein. 10.1016/j.sbi.2005.02.005
-
V. Tozzini, Curr. Opin. Struct. Biol. 15, 144 (2005) and references therein. 10.1016/j.sbi.2005.02.005
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 144
-
-
Tozzini, V.1
-
7
-
-
25844431698
-
-
references therein. 10.1016/j.sbi.2005.08.007
-
I. Bahar and A. Rader, Curr. Opin. Struct. Biol. 15, 586 (2005) and references therein. 10.1016/j.sbi.2005.08.007
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 586
-
-
Bahar, I.1
Rader, A.2
-
9
-
-
33750326604
-
-
references therein. 10.1016/j.physre2006.08.003
-
M. Müller, K. Katsov, and M. Schick, Phys. Rep. 434, 113 (2006) and references therein. 10.1016/j.physrep.2006.08.003
-
(2006)
Phys. Rep.
, vol.434
, pp. 113
-
-
Müller, M.1
Katsov, K.2
Schick, M.3
-
10
-
-
0034446492
-
-
(Springer-Verlag, Berlin), Vol., and references therein.
-
J. Baschnagel, K. Binder, P. Doruker, A. A. Gusev, O. Hahn, K. Kremer, W. L. Mattice, F. Müller-Plathe, M. Murat, and W. Paul, Advances in Polymer Science (Springer-Verlag, Berlin, 2000), Vol. 152, p. 41, and references therein.
-
(2000)
Advances in Polymer Science
, vol.152
, pp. 41
-
-
Baschnagel, J.1
Binder, K.2
Doruker, P.3
Gusev, A.A.4
Hahn, O.5
Kremer, K.6
Mattice, W.L.7
Müller-Plathe, F.8
Murat, M.9
Paul, W.10
-
12
-
-
0017157584
-
-
10.1016/0022-2836(76)90004-8
-
M. Levitt, J. Mol. Biol. 104, 59 (1976). 10.1016/0022-2836(76)90004-8
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 59
-
-
Levitt, M.1
-
13
-
-
0019569599
-
-
10.1002/bi1981.360200511
-
N. Gō and H. Abe, Biopolymers 20, 991 (1981). 10.1002/bip.1981. 360200511
-
(1981)
Biopolymers
, vol.20
, pp. 991
-
-
Go, N.1
Abe, H.2
-
14
-
-
0019571422
-
-
10.1002/bi1981.360200512
-
H. Abe and N. Gō, Biopolymers 20, 1013 (1981). 10.1002/bip.1981. 360200512
-
(1981)
Biopolymers
, vol.20
, pp. 1013
-
-
Abe, H.1
Go, N.2
-
17
-
-
0035902367
-
-
10.1021/jp010238p
-
J. C. Shelley, M. Y. Shelley, R. C. Reeder, S. Bandyopadhyay, and M. L. Klein, J. Phys. Chem. B 105, 4464 (2001). 10.1021/jp010238p
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 4464
-
-
Shelley, J.C.1
Shelley, M.Y.2
Reeder, R.C.3
Bandyopadhyay, S.4
Klein, M.L.5
-
19
-
-
3142681595
-
-
10.1021/jp030844f
-
A. Liwo, S. Oldziej, C. Czaplewski, U. Kozlowska, and H. A. Scheraga, J. Phys. Chem. B 108, 9421 (2004). 10.1021/jp030844f
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 9421
-
-
Liwo, A.1
Oldziej, S.2
Czaplewski, C.3
Kozlowska, U.4
Scheraga, H.A.5
-
20
-
-
0035424584
-
-
10.1063/1.1383989
-
A. Liwo, C. Czaplewski, J. Pillardy, and H. A. Scheraga, J. Chem. Phys. 115, 2323 (2001). 10.1063/1.1383989
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 2323
-
-
Liwo, A.1
Czaplewski, C.2
Pillardy, J.3
Scheraga, H.A.4
-
25
-
-
58249111738
-
-
10.1261/rna.1270809
-
M. A. Jonikas, R. J. Radmer, A. Laederach, R. Das, S. Pearlman, D. Herschlag, and R. B. Altman, RNA 15, 189 (2009). 10.1261/rna.1270809
-
(2009)
RNA
, vol.15
, pp. 189
-
-
Jonikas, M.A.1
Radmer, R.J.2
Laederach, A.3
Das, R.4
Pearlman, S.5
Herschlag, D.6
Altman, R.B.7
-
29
-
-
33644893631
-
-
10.1021/jp0550816
-
A. Y. Shih, A. Arkhipov, P. L. Freddolino, and K. Schulten, J. Phys. Chem. B 110, 3674 (2006). 10.1021/jp0550816
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 3674
-
-
Shih, A.Y.1
Arkhipov, A.2
Freddolino, P.L.3
Schulten, K.4
-
30
-
-
33847242278
-
-
10.1016/j.jsb.2006.10.004
-
P. J. Bond, J. Holyoake, A. Ivetac, S. Khalid, and M. S. Sansom, J. Struct. Biol. 157, 593 (2007). 10.1016/j.jsb.2006.10.004
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 593
-
-
Bond, P.J.1
Holyoake, J.2
Ivetac, A.3
Khalid, S.4
Sansom, M.S.5
-
32
-
-
49449113010
-
-
10.1021/ct700324x
-
L. Monticelli, S. K. Kandasamy, X. Periole, R. G. Larson, D. P. Tieleman, and S.-J. Marrink, J. Chem. Theory Comput. 4, 819 (2008). 10.1021/ct700324x
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.-J.6
-
33
-
-
50349098485
-
-
10.1529/biophysj.108.131714
-
K. Moritsugu and J. C. Smith, Biophys. J. 95, 1639 (2008). 10.1529/biophysj.108.131714
-
(2008)
Biophys. J.
, vol.95
, pp. 1639
-
-
Moritsugu, K.1
Smith, J.C.2
-
38
-
-
0142198916
-
-
10.1063/1.1607955
-
S. O. Nielsen, C. F. Lopez, G. Srinivas, and M. L. Klein, J. Chem. Phys. 119, 7043 (2003). 10.1063/1.1607955
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 7043
-
-
Nielsen, S.O.1
Lopez, C.F.2
Srinivas, G.3
Klein, M.L.4
-
40
-
-
1842528793
-
-
10.1063/1.1644092
-
G. S. Ayton, H. L. Tepper, D. T. Mirijanian, and G. A. Voth, J. Chem. Phys. 120, 4074 (2004). 10.1063/1.1644092
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 4074
-
-
Ayton, G.S.1
Tepper, H.L.2
Mirijanian, D.T.3
Voth, G.A.4
-
45
-
-
33748448490
-
-
10.1529/biophysj.106.083568
-
H. Gohlke and M. Thorpe, Biophys. J. 91, 2115 (2006). 10.1529/biophysj.106.083568
-
(2006)
Biophys. J.
, vol.91
, pp. 2115
-
-
Gohlke, H.1
Thorpe, M.2
-
47
-
-
33846106848
-
-
10.1021/jp0644558
-
L.-J. Chen, H.-J. Qian, Z.-Y. Lu, Z.-S. Li, and C.-C. Sun, J. Phys. Chem. B 110, 24093 (2006). 10.1021/jp0644558
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 24093
-
-
Chen, L.-J.1
Qian, H.-J.2
Lu, Z.-Y.3
Li, Z.-S.4
Sun, C.-C.5
-
50
-
-
46149109506
-
-
10.1063/1.2938860
-
W. G. Noid, J.-W. Chu, G. S. Ayton, V. Krishna, S. Izvekov, G. A. Voth, A. Das, and H. C. Andersen, J. Chem. Phys. 128, 244114 (2008). 10.1063/1.2938860
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 244114
-
-
Noid, W.G.1
Chu, J.-W.2
Ayton, G.S.3
Krishna, V.4
Izvekov, S.5
Voth, G.A.6
Das, A.7
Andersen, H.C.8
-
52
-
-
46149099398
-
-
10.1063/1.2938857
-
W. G. Noid, P. Liu, Y. Wang, J.-W. Chu, G. S. Ayton, S. Izvekov, H. C. Andersen, and G. A. Voth, J. Chem. Phys. 128, 244115 (2008). 10.1063/1.2938857
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 244115
-
-
Noid, W.G.1
Liu, P.2
Wang, Y.3
Chu, J.-W.4
Ayton, G.S.5
Izvekov, S.6
Andersen, H.C.7
Voth, G.A.8
-
55
-
-
77950149115
-
-
10.1021/ct900643r
-
L. Lu, S. Izvekov, A. Das, H. C. Andersen, and G. A. Voth, J. Chem. Theory Comput. 6, 954 (2010). 10.1021/ct900643r
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 954
-
-
Lu, L.1
Izvekov, S.2
Das, A.3
Andersen, H.C.4
Voth, G.A.5
-
56
-
-
33644903231
-
-
10.1021/jp0548220
-
Y. Wang, S. Izvekov, T. Yan, and G. A. Voth, J. Phys. Chem. B 110, 3564 (2006). 10.1021/jp0548220
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 3564
-
-
Wang, Y.1
Izvekov, S.2
Yan, T.3
Voth, G.A.4
-
58
-
-
34247852583
-
-
10.1529/biophysj.106.094425
-
J. Zhou, I. F. Thorpe, S. Izvekov, and G. A. Voth, Biophys. J. 92, 4289 (2007). 10.1529/biophysj.106.094425
-
(2007)
Biophys. J.
, vol.92
, pp. 4289
-
-
Zhou, J.1
Thorpe, I.F.2
Izvekov, S.3
Voth, G.A.4
-
64
-
-
46249092554
-
-
10.1021/ct700301q
-
B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl, J. Chem. Theory Comput. 4, 435 (2008). 10.1021/ct700301q
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
66
-
-
84943502952
-
-
10.1080/00268978400101201
-
S. Nosé, Mol. Phys. 52, 255 (1984). 10.1080/00268978400101201
-
(1984)
Mol. Phys.
, vol.52
, pp. 255
-
-
Nosé, S.1
-
67
-
-
0001538909
-
-
10.1103/PhysRevA.31.1695
-
W. G. Hoover, Phys. Rev. A 31, 1695 (1985). 10.1103/PhysRevA.31.1695
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695
-
-
Hoover, W.G.1
-
69
-
-
36749110571
-
-
10.1063/1.442716
-
W. C. Swope, H. C. Andersen, P. H. Berens, and K. R. Wilson, J. Chem. Phys. 76, 637 (1982). 10.1063/1.442716
-
(1982)
J. Chem. Phys.
, vol.76
, pp. 637
-
-
Swope, W.C.1
Andersen, H.C.2
Berens, P.H.3
Wilson, K.R.4
-
70
-
-
36749107785
-
-
10.1063/1.439486
-
H. C. Andersen, J. Chem. Phys. 72, 2384 (1980). 10.1063/1.439486
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 2384
-
-
Andersen, H.C.1
-
71
-
-
73949097591
-
-
10.1021/ct900369w
-
V. Rühle, C. Junghans, A. Lukyanov, K. Kremer, and D. Andrienko, J. Chem. Theory Comput. 5, 3211 (2009). 10.1021/ct900369w
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 3211
-
-
Rühle, V.1
Junghans, C.2
Lukyanov, A.3
Kremer, K.4
Andrienko, D.5
|