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Volumn 10, Issue 3, 1998, Pages 323-332

Molecular Cloning, Sequencing, and Phylogenetic Relationships of a New Potyvirus: Sugarcane Streak Mosaic Virus, and a Reevaluation of the Classification of the Potyviridae

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; VIRUS RNA;

EID: 0032233760     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1998.0535     Document Type: Article
Times cited : (94)

References (46)
  • 1
    • 0000266922 scopus 로고
    • A randomization test for phylogenetic information in systematic data
    • Archie J. W. A randomization test for phylogenetic information in systematic data. Syst. Zool. 38:1989;239-252.
    • (1989) Syst. Zool. , vol.38 , pp. 239-252
    • Archie, J.W.1
  • 2
    • 0025141014 scopus 로고
    • A point mutation in the coat protein abolishes aphid transmissability of a potyvirus
    • Atreya C. D., Raccah B., Pirone T. P. A point mutation in the coat protein abolishes aphid transmissability of a potyvirus. Virology. 178:1990;161-165.
    • (1990) Virology , vol.178 , pp. 161-165
    • Atreya, C.D.1    Raccah, B.2    Pirone, T.P.3
  • 3
    • 0031013943 scopus 로고    scopus 로고
    • 3′-terminal sequences of the RNA genomes of narcissus latent and maclura mosaic viruses suggest that they represent a new genus of thePotyviridae
    • Badge J., Robinson D. J., Brunt A. A., Foster G. D. 3′-terminal sequences of the RNA genomes of narcissus latent and maclura mosaic viruses suggest that they represent a new genus of thePotyviridae. J. Gen. Virol. 78:1997;253-257.
    • (1997) J. Gen. Virol. , vol.78 , pp. 253-257
    • Badge, J.1    Robinson, D.J.2    Brunt, A.A.3    Foster, G.D.4
  • 4
    • 0000248877 scopus 로고
    • Degradation of wheat streak mosaic virus capsid protein during leaf senescence
    • Brakke M. K., Skopp R. N., Lane L. C. Degradation of wheat streak mosaic virus capsid protein during leaf senescence. Phytopathology. 80:1990;1401-1406.
    • (1990) Phytopathology , vol.80 , pp. 1401-1406
    • Brakke, M.K.1    Skopp, R.N.2    Lane, L.C.3
  • 5
    • 0000367652 scopus 로고
    • The limits of amino acid sequence data in Angiosperm phylogenetic reconstruction
    • Bremer K. The limits of amino acid sequence data in Angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803.
    • (1988) Evolution , vol.42 , pp. 795-803
    • Bremer, K.1
  • 6
    • 43949160320 scopus 로고
    • Branch support and tree stability
    • Bremer K. Branch support and tree stability. Cladistics. 10:1994;295-304.
    • (1994) Cladistics , vol.10 , pp. 295-304
    • Bremer, K.1
  • 7
    • 0000443251 scopus 로고    scopus 로고
    • PTP is meaningless, T-PTP is contradictory: A reply to Trueman
    • Carpenter J. M., Goloboff P. A., Farris J. S. PTP is meaningless, T-PTP is contradictory: A reply to Trueman. Cladistics. 14:1998;105-116.
    • (1998) Cladistics , vol.14 , pp. 105-116
    • Carpenter, J.M.1    Goloboff, P.A.2    Farris, J.S.3
  • 8
    • 0030060081 scopus 로고    scopus 로고
    • Molecular evidence that the whitefly-transmitted sweetpotato mild mottle virus belongs to a distinct genus of thePotyviridae
    • Colinet D., Kummert J., Lepoivre P. Molecular evidence that the whitefly-transmitted sweetpotato mild mottle virus belongs to a distinct genus of thePotyviridae. Arch. Virol. 141:1996;125-135.
    • (1996) Arch. Virol. , vol.141 , pp. 125-135
    • Colinet, D.1    Kummert, J.2    Lepoivre, P.3
  • 9
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • Washington: National Biomedical Research Foundation. p. 345-352
    • Dayhoff M. O., Schwartz R. M., Orcutt B. C. A model of evolutionary change in proteins. Atlas of Protein Sequence Structure. 1978;National Biomedical Research Foundation, Washington. p. 345-352.
    • (1978) Atlas of Protein Sequence Structure
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 10
    • 0029778743 scopus 로고    scopus 로고
    • Identification of structural similarities between putative transmission proteins ofPolymyxaSpongospora
    • Dessens J. T., Meyer M. Identification of structural similarities between putative transmission proteins ofPolymyxaSpongospora. Virus Genes. 12:1996;95-99.
    • (1996) Virus Genes , vol.12 , pp. 95-99
    • Dessens, J.T.1    Meyer, M.2
  • 12
    • 0024708229 scopus 로고
    • Molecular genetic analysis of a plant virus polyprotein cleavage site: A model
    • Dougherty W. G., Cary S. M., Parks T. D. Molecular genetic analysis of a plant virus polyprotein cleavage site: A model. Virology. 171:1989;356-364.
    • (1989) Virology , vol.171 , pp. 356-364
    • Dougherty, W.G.1    Cary, S.M.2    Parks, T.D.3
  • 13
    • 0025482716 scopus 로고
    • Evolutionary relationships among California serogroup viruses (Bunyaviridae) andAedes
    • Eldridge B. Evolutionary relationships among California serogroup viruses (Bunyaviridae) andAedes. J. Med. Entomol. 27:1990;738-749.
    • (1990) J. Med. Entomol. , vol.27 , pp. 738-749
    • Eldridge, B.1
  • 15
    • 0002296484 scopus 로고
    • Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure
    • Faith D. D., Cranston P. S. Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure. Cladistics. 7:1991;1-28.
    • (1991) Cladistics , vol.7 , pp. 1-28
    • Faith, D.D.1    Cranston, P.S.2
  • 16
    • 0039781127 scopus 로고
    • Identification of sugarcane mosaic virus and characterization of strains of the virus from Pakistan, Iran, and Camaroon
    • Gillaspie A. G. Jr., Mock R. G., Smith F. F. Identification of sugarcane mosaic virus and characterization of strains of the virus from Pakistan, Iran, and Camaroon. Proc. Int. Soc. Sugar Cane Technol. 16:1978;347-355.
    • (1978) Proc. Int. Soc. Sugar Cane Technol. , vol.16 , pp. 347-355
    • Gillaspie A.G., Jr.1    Mock, R.G.2    Smith, F.F.3
  • 17
    • 0040967565 scopus 로고
    • Sugarcane mosaic virus. A survey of strains from sugarcane with a set of sorghum inbred lines
    • Gillaspie A. G. Jr., Mock R. G. Sugarcane mosaic virus. A survey of strains from sugarcane with a set of sorghum inbred lines. Sugar Cane. 2:1984;1-3.
    • (1984) Sugar Cane , vol.2 , pp. 1-3
    • Gillaspie A.G., Jr.1    Mock, R.G.2
  • 18
    • 0029085263 scopus 로고
    • The complete nucleotide sequence and genome organization of the mite-transmitted brome streak mosaic rymovirus in comparison with those of potyviruses
    • Gotz R., Maiss E. The complete nucleotide sequence and genome organization of the mite-transmitted brome streak mosaic rymovirus in comparison with those of potyviruses. J. Gen. Virol. 76:1995;2035-2042.
    • (1995) J. Gen. Virol. , vol.76 , pp. 2035-2042
    • Gotz, R.1    Maiss, E.2
  • 19
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M. H., Kishino H., Yano K. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:1985;160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.H.1    Kishino, H.2    Yano, K.3
  • 20
    • 0003934790 scopus 로고
    • D.D. Davis, & R. Zangeil. Urbana: Univ. of Illinois Press
    • Hennig W. Davis D. D., Zangeil R. Phylogenetic Systematics. 1966;Univ. of Illinois Press, Urbana.
    • (1966) Phylogenetic Systematics
    • Hennig, W.1
  • 21
    • 0040967566 scopus 로고
    • Hitachi Software Engineering Co. Ltd.
    • Hitachi Software Engineering Co. Ltd. 1991, 1992.
    • (1991)
  • 22
    • 0039188717 scopus 로고
    • Characterization of a krish-sorghum infecting potyvirus. (Abs.)
    • Jensen S. G., Hall J. S. Characterization of a krish-sorghum infecting potyvirus. (Abs.). Sorghum Newslett. 34:1993a;17.
    • (1993) Sorghum Newslett. , vol.34 , pp. 17
    • Jensen, S.G.1    Hall, J.S.2
  • 23
    • 0039781126 scopus 로고
    • Identification of a new sorghum infecting species of potyvirus from sugarcane. (Abs.)
    • Jensen S. G., Hall J. S. Identification of a new sorghum infecting species of potyvirus from sugarcane. (Abs.). Phytopathology. 83:1993b;884.
    • (1993) Phytopathology , vol.83 , pp. 884
    • Jensen, S.G.1    Hall, J.S.2
  • 24
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones D. T., Taylor W. R., Thornton J. M. The rapid generation of mutation data matrices from protein sequences. CABIOS. 8:1992;275-282.
    • (1992) CABIOS , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 26
    • 0021770887 scopus 로고
    • Primary structural comparison of RNA-dependent RNA polymerases from plant, animal and bacterial viruses
    • Kamer G., Agros P. Primary structural comparison of RNA-dependent RNA polymerases from plant, animal and bacterial viruses. Nucleic Acids Res. 12:1984;7269-7282.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 7269-7282
    • Kamer, G.1    Agros, P.2
  • 27
    • 0000970215 scopus 로고
    • Propagation and purification of RNA plant viruses
    • Lane L. C. Propagation and purification of RNA plant viruses. Methods Enzymol. 118:1986;687-696.
    • (1986) Methods Enzymol. , vol.118 , pp. 687-696
    • Lane, L.C.1
  • 28
    • 0029950437 scopus 로고    scopus 로고
    • Tobamovirus evolution: Gene overlaps, recombination, and taxonomic implications
    • Lartey R. T., Voss T. C., Melcher U. Tobamovirus evolution: Gene overlaps, recombination, and taxonomic implications. Mol. Bio. Evol. 13:1996;1327-1338.
    • (1996) Mol. Bio. Evol. , vol.13 , pp. 1327-1338
    • Lartey, R.T.1    Voss, T.C.2    Melcher, U.3
  • 29
    • 0030000952 scopus 로고    scopus 로고
    • Relative apparent synapomorphy analysis (RASA) I: The statistical measurement of phylogenetic signal
    • Lyons-Weiler J., Hoelzer G. A., Tausch R. J. Relative apparent synapomorphy analysis (RASA) I: The statistical measurement of phylogenetic signal. Mol. Bio. Evol. 13:1996;749-757.
    • (1996) Mol. Bio. Evol. , vol.13 , pp. 749-757
    • Lyons-Weiler, J.1    Hoelzer, G.A.2    Tausch, R.J.3
  • 30
    • 0003761045 scopus 로고
    • F.A. Murphy, C.M. Fauquet, D.H.L. Bishop, S.A. Ghabrial, A.W. Jarvis, G.P. Martelli, M.A. Mayo, & M.D. Summers.
    • Murphy F. A., Fauquet C. M., Bishop D. H. L., Ghabrial S. A., Jarvis A. W., Martelli G. P., Mayo M. A., Summers M. D. Virus taxonomy-classification and nomenclature of viruses. 1995;1-11.
    • (1995) Virus Taxonomy-classification and Nomenclature of Viruses , pp. 1-11
  • 32
    • 0003648101 scopus 로고
    • September Genetics Computer Group, 575 Science Drive, Madison, Wisconsin, USA, 53711
    • Program manual for the Wisconsin Package, September 1994, Genetics Computer Group, 575 Science Drive, Madison, Wisconsin, USA, 53711.
    • (1994) Program Manual for the Wisconsin Package
  • 33
    • 0030461942 scopus 로고    scopus 로고
    • Molecular cloning and nucleotide sequence of the partial genomes of Agropyron and Hordeum mosaic viruses, two members of theRymovirusPotyviridae
    • Salm S. N., Rey M. E. C., Robertson N. L., French R., Rabenstein F., Schubert J. Molecular cloning and nucleotide sequence of the partial genomes of Agropyron and Hordeum mosaic viruses, two members of theRymovirusPotyviridae. Arch. Virol. 141:1996a;2115-2127.
    • (1996) Arch. Virol. , vol.141 , pp. 2115-2127
    • Salm, S.N.1    Rey, M.E.C.2    Robertson, N.L.3    French, R.4    Rabenstein, F.5    Schubert, J.6
  • 34
    • 0030469222 scopus 로고    scopus 로고
    • Phylogenetic justification for splitting theRymovirusPotyviridae
    • Salm S. N., Rey M. E. C., Rybicki E. P. Phylogenetic justification for splitting theRymovirusPotyviridae. Arch. Virol. 141:1996b;2237-2242.
    • (1996) Arch. Virol. , vol.141 , pp. 2237-2242
    • Salm, S.N.1    Rey, M.E.C.2    Rybicki, E.P.3
  • 36
    • 0028512129 scopus 로고
    • A stochastic model for the evolution of autocorrelated DNA sequences
    • Schöniger M., von Haeseler A. A stochastic model for the evolution of autocorrelated DNA sequences. Mol. Phyl. Evol. 3:1994;240-247.
    • (1994) Mol. Phyl. Evol. , vol.3 , pp. 240-247
    • Schöniger, M.1    Von Haeseler, A.2
  • 38
    • 0040373312 scopus 로고
    • A note on the role of the eriophyid miteAceria sacchari
    • Sithanantham S., Muthuswamy S., Bhaskaran T. L. A note on the role of the eriophyid miteAceria sacchari. Sci. Culture. 38:1972;248-250.
    • (1972) Sci. Culture , vol.38 , pp. 248-250
    • Sithanantham, S.1    Muthuswamy, S.2    Bhaskaran, T.L.3
  • 39
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructuring tree topologies
    • Strimmer K., von Haeseler A. Quartet puzzling: A quartet maximum likelihood method for reconstructuring tree topologies. Mol. Biol. Evol. 13:1996;964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 41
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:1993;512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 42
    • 0025777178 scopus 로고
    • Taxonomy of Potyviruses: Current problems and some solutions
    • Ward C. W., Shukla D. D. Taxonomy of Potyviruses: Current problems and some solutions. Intervirology. 32:1991;269-296.
    • (1991) Intervirology , vol.32 , pp. 269-296
    • Ward, C.W.1    Shukla, D.D.2
  • 43
    • 0027017712 scopus 로고
    • Sequence data as the major criterion for potyvirus classification
    • Ward C. W., McKern N. M., Frenkel M. J., Shukla D. D. Sequence data as the major criterion for potyvirus classification. Arch. Virol. 1992;283-297.
    • (1992) Arch. Virol. , pp. 283-297
    • Ward, C.W.1    McKern, N.M.2    Frenkel, M.J.3    Shukla, D.D.4
  • 44
    • 0002362616 scopus 로고
    • Molecular systematics of the Potyviridae, the largest plant virus family
    • A. Gibbs, C. Calisher, & F. García-Arenal. Cambridge: Cambridge Univ. Press
    • Ward C. W., Weiller G. F., Shukla D. D., Gibbs A. J. Molecular systematics of the Potyviridae, the largest plant virus family. Gibbs A., Calisher C., García-Arenal F. Molecular Basis of Virus Evolution. 1995;477-500 Cambridge Univ. Press, Cambridge.
    • (1995) Molecular Basis of Virus Evolution , pp. 477-500
    • Ward, C.W.1    Weiller, G.F.2    Shukla, D.D.3    Gibbs, A.J.4
  • 45
    • 0028870982 scopus 로고
    • Biological and molecular characterization of lettuce mosaic potyvirus isolates from the Salinas Valley of California
    • Zerbini F. M., Koike S. T., Gilbertson R. L. Biological and molecular characterization of lettuce mosaic potyvirus isolates from the Salinas Valley of California. Phytopathology. 85:1995;746-752.
    • (1995) Phytopathology , vol.85 , pp. 746-752
    • Zerbini, F.M.1    Koike, S.T.2    Gilbertson, R.L.3
  • 46
    • 0027018114 scopus 로고
    • Designation of potyvirus genera: A question of perspective and timing
    • Zettler F. W. Designation of potyvirus genera: A question of perspective and timing. Arch. Virol. 1992;235-237.
    • (1992) Arch. Virol. , pp. 235-237
    • Zettler, F.W.1


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