Molecular characterization and detection of recombinant isolates of potato virus Y from China

Archives of Virology

Volumn 154, Issue 8, 2009, Pages 1303-1312

  Hu, Xinxi ^a,b   He, Changzheng ^a   Xiao, Ya ^a   Xiong, Xingyao ^a   Nie, Xianzhou ^b  

^a HUNAN AGRICULTURAL UNIVERSITY   (China)

^b FREDERICTON RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

NICOTIANA TABACUM; POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM;

ARTICLE; CHINA; GENETIC RECOMBINATION; GENETICS; ISOLATION AND PURIFICATION; PHYLOGENY; PLANT DISEASE; POTATO; POTYVIRUS; VIROLOGY; VIRUS GENOME;

CHINA; GENOME, VIRAL; PHYLOGENY; PLANT DISEASES; POTYVIRUS; RECOMBINATION, GENETIC; SOLANUM TUBEROSUM;

EID: 70349579112     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-009-0448-z     Document Type: Article

References (34)

1. Blanco-Urgoiti B, Sanchez F, Perez de San Roman C, Dopazo J, Ponz F (1998) Potato virus Y group C isolates are a homogeneous pathotype but two different genetic strains. J Gen Virol 79:2037-2042.
2. Blanco-Urgoiti B, Tribodet M, Leclere S, Ponz F, Pérez de san román C, Legorburu FJ, Kerlan C (1998) Characterization of potato potyvirus Y (PVY) isolates from seed potato batches. Situation NTN, Wilga and Z isolates. Eur J Plant Pathol 104:1-9.
3. NTN. J Phytopathol 155:409-415.
4. N isolates. Arch Virol 147:363-378.
5. Hane DC, Hamm PB (1999) Effects of seedborne potato virus Y infection in two potato cultivars expressing mild disease symptoms. Plant Dis 83:43-45.
6. Jakab G, Droz E, Brigneti G, Baulcombe D, Malnoe P (1997) Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y. J Gen Virol 78:3141-3145.
7. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) ClustalW and ClustalX version 2. Bioinformatics 23:2947-2948.
8. Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152-160.
9. Lorenzen J, Nolte P, Martin D, Pasche JS, Gudmestad NC (2008) NE-11 represents a new strain variant class of Potato virus Y. Arch Virol 153:517-525.
10. Lorenzen JH, Meacham T, Berger PH, Shiel PJ, Crosslin JM, Hamm PB, Kopp H (2006) Whole genome characterization of Potato virus Y isolates collected in the western USA and their comparison to isolates from Europe and Canada. Arch Virol 151:1055-1074.
11. Mohapatra SS, Poole RJ, Dhindsa RS (1987) Changes in protein patterns and translatable messenger RNA populations during cold acclimation of alfalfa. Plant Physiol 84:1172-1176.
12. Nie X, Singh RP (2001) Differential accumulation of Potato virus A and expression of pathogenesis-related genes in resistant potato cv. Shepody upon graft inoculation. Phytopathology 91:197-203.
13. Nie X, Singh RP (2001) A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves, and tubers. J Virol Methods 91:37-49.
14. NTN. J Virol Methods 103:145-156.
15. Nie X, Singh RP (2002) A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR. J Virol Methods 104:41-54.
16. N by mutation rather than recombination. Virus Genes 26:39-47.
17. NTN strains by multiplex RT-PCR. J Virol Methods 113:69-77.
18. Nie X, Singh RP, Singh M (2004) Molecular and pathological characterization of N:O isolates of the Potato virus Y from Manitoba, Canada. Can J Plant Pathol 26:573-583.
19. Nie X, Bai Y, Molen TA, Desjardins DC (2008) Development of universal primers for detection of potato carlaviruses by RT-PCR. J Virol Methods 149:209-216.
20. Nolte P, Whitworth JL, Thornton MK, McIntosh CS (2004) Effect of seedborne Potato virus Y on performance of Russet Burbank, Russet Norkotah, and Shepody potato. Plant Dis 88:248-252.
21. Ogawa T, Tomitaka Y, Nakagawa A, Ohshima K (2008) Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res 131:199-212.
22. Piche LM, Singh RP, Nie X, Gudmestad NC (2004) Diversity among Potato virus Y isolates obtained from potatoes grown in the United States. Phytopathology 94:1368-1375.
23. Riechmann JL, Laín S, García JA (1992) Highlights and prospects of potyvirus molecular biology. J Gen Virol 73:1-16.
24. Romero A, Blanco-Urgoiti B, Soto MJ, Fereres A, Ponz F (2001) Characterization of typical pepper-isolates of PVY reveals multiple pathotypes within a single genetic strain. Virus Res 79:71-80.
25. Schubert J, Fomitcheva V, Sztangret-Wisniewski J (2007) Differentiation of Potato virus Y using improved sets of diagnostic PCR-primers. J Virol Methods 140:66-74.
26. Shukla DD, Ward CW, Brunt AA (1994) The Potyviridae. CAB International, Wallingford.
27. Singh RP, McLaren DL, Nie X, Singh M (2003) Possible escape of a recombinant isolate of Potato virus Y by serological indexing and methods of its detection. Plant Dis 87:679-685.
28. Singh RP, Nie X (2003) Multiple virus and viroid detection and strain separation via multiplex reverse transcription-polymerase chain reaction. Can J Plant Pathol 25:127-134.
29. O). Can J Plant Pathol 18:209-224.
30. Singh RP, Valkonen JPT, Gray SM, Boonham N, Jones RAC, Kerlan C, Schubert J (2008) The naming of Potato virus Y strains infecting potato. Arch Virol 153:1-13.
31. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
32. Thole V, Dalmay T, Burgyan J, Balazs E (1993) Cloning and sequencing of potato virus Y (Hungarian isolate) genomic RNA. Gene 123:149-156.
33. Whitworth JL, Nolte P, McIntosh C, Davidson R (2006) Effect of Potato virus Y on yield of three potato cultivars grown under different nitrogen levels. Plant Dis 90:73-76.
34. Zhang Z, Li Y (2001) Plant viruses in Yunnan. Science Press, Beijing.