메뉴 건너뛰기




Volumn 96, Issue 3, 2006, Pages 274-279

Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain

Author keywords

[No Author keywords available]

Indexed keywords

LYCOPERSICON ESCULENTUM; PEPINO MOSAIC VIRUS; SOLANUM; SOLANUM MURICATUM;

EID: 33644920668     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-96-0274     Document Type: Article
Times cited : (93)

References (40)
  • 2
    • 12344296268 scopus 로고    scopus 로고
    • Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus
    • Bonnet, J., Fraile, A., Sacristán, S., Malpica, J. M., and García-Arenal, F. 2005. Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology 332:359-368.
    • (2005) Virology , vol.332 , pp. 359-368
    • Bonnet, J.1    Fraile, A.2    Sacristán, S.3    Malpica, J.M.4    García-Arenal, F.5
  • 3
    • 0036902807 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV)
    • Cotillon, A.-C., Girard, M., and Ducouret, S. 2002. Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV). Arch. Virol. 147:2225-2230.
    • (2002) Arch. Virol. , vol.147 , pp. 2225-2230
    • Cotillon, A.-C.1    Girard, M.2    Ducouret, S.3
  • 4
    • 0034630910 scopus 로고    scopus 로고
    • Viruses at the edge of adaptation
    • Domingo, E. 2000. Viruses at the edge of adaptation. Virology 270:251-253.
    • (2000) Virology , vol.270 , pp. 251-253
    • Domingo, E.1
  • 5
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo, E., and Holland, J. J. 1997. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:151-178.
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 6
    • 0002918460 scopus 로고
    • Problem of discovering most parsimonious tree
    • Fitch, W. M. 1977. Problem of discovering most parsimonious tree. Am. Nat. 111:223-257.
    • (1977) Am. Nat. , vol.111 , pp. 223-257
    • Fitch, W.M.1
  • 7
    • 0030812833 scopus 로고    scopus 로고
    • A century of Tobamovirus evolution in an Australian population of Nicotiana glauca
    • Fraile, A., Escriu, F., Aranda, M. A., Malpica, J. M., Gibbs, A., and García-Arenal, F. 1997.A century of Tobamovirus evolution in an Australian population of Nicotiana glauca. J. Virol. 71:8316-8320.
    • (1997) J. Virol. , vol.71 , pp. 8316-8320
    • Fraile, A.1    Escriu, F.2    Aranda, M.A.3    Malpica, J.M.4    Gibbs, A.5    García-Arenal, F.6
  • 9
    • 0034798786 scopus 로고    scopus 로고
    • Variability and genetic structure of plant virus populations
    • García-Arenal, F., Fraile, A., and Malpica, J. M. 2001. Variability and genetic structure of plant virus populations. Annu. Rev. Phytopathol. 39:157-186.
    • (2001) Annu. Rev. Phytopathol. , vol.39 , pp. 157-186
    • García-Arenal, F.1    Fraile, A.2    Malpica, J.M.3
  • 10
    • 18844479256 scopus 로고    scopus 로고
    • An analysis of the durability of the resistance to plant viruses
    • García-Arenal, F., and McDonald, B. A. 2003. An analysis of the durability of the resistance to plant viruses. Phytopathology 93:941-952.
    • (2003) Phytopathology , vol.93 , pp. 941-952
    • García-Arenal, F.1    McDonald, B.A.2
  • 11
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • Jacobsen, I. B., and Eastel, S. A. 1996. A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput. Appl. Biosci. 12:291-295.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 291-295
    • Jacobsen, I.B.1    Eastel, S.A.2
  • 12
    • 85032069909 scopus 로고
    • Pepino mosaic virus, a new potexvirus from pepino (Solanum muricatum)
    • Jones, R. A. C., Koening, R., and Lesemann, D. E. 1980. Pepino mosaic virus, a new potexvirus from pepino (Solanum muricatum). Ann. Appl. Biol. 94:61-68.
    • (1980) Ann. Appl. Biol. , vol.94 , pp. 61-68
    • Jones, R.A.C.1    Koening, R.2    Lesemann, D.E.3
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K., and Nei, M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5:150-163.
    • (2004) Brief. Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 18
    • 0001678584 scopus 로고    scopus 로고
    • Occurrence of Pepino mosaic virus in European tomato crops: Identification, etiology and epidemiology
    • Berlin-Dahlem
    • Lesemann, D. E., Dalchow, J., Winter, S., and Pfeilstetter, E. 2000. Occurrence of Pepino mosaic virus in European tomato crops: Identification, etiology and epidemiology. Mitt. Biol. Bundesanst. Land Forstwirtsch. Berlin-Dahlem. 376:323.
    • (2000) Mitt. Biol. Bundesanst. Land Forstwirtsch. , vol.376 , pp. 323
    • Lesemann, D.E.1    Dalchow, J.2    Winter, S.3    Pfeilstetter, E.4
  • 19
    • 15244346389 scopus 로고    scopus 로고
    • Comparison of the complete sequences of three different isolates of Pepino mosaic virus: Size variability of TGBp3 protein between tomato and L. peruvianum isolates
    • López, C., Soler, S., and Nuez, F. 2005. Comparison of the complete sequences of three different isolates of Pepino mosaic virus: Size variability of TGBp3 protein between tomato and L. peruvianum isolates. Arch. Virol. 150:619-627.
    • (2005) Arch. Virol. , vol.150 , pp. 619-627
    • López, C.1    Soler, S.2    Nuez, F.3
  • 21
    • 20144376493 scopus 로고    scopus 로고
    • Two unique isolates of Pepino mosaic virus from a limited source of pooled tomato tissue are distinct from a third (European-like) US isolate
    • Maroon-Lango, C. J., Guaragna, M. A., Jordan, R. L., Hammond, J., Bandla, M., and Marquardt, S. K. 2005. Two unique isolates of Pepino mosaic virus from a limited source of pooled tomato tissue are distinct from a third (European-like) US isolate. Arch. Virol. 150:1187-1201.
    • (2005) Arch. Virol. , vol.150 , pp. 1187-1201
    • Maroon-Lango, C.J.1    Guaragna, M.A.2    Jordan, R.L.3    Hammond, J.4    Bandla, M.5    Marquardt, S.K.6
  • 22
    • 0036867188 scopus 로고    scopus 로고
    • A RT-PCR assay combined with RFLP analysis for detection and differentiation of isolates of Pepino mosaic virus (PepMV) from tomato
    • Martínez-Culebras, P. V., Lázaro, A., Abad-Campos, P., and Jordá, C. 2002. A RT-PCR assay combined with RFLP analysis for detection and differentiation of isolates of Pepino mosaic virus (PepMV) from tomato. Eur. J. Plant Pathol. 108:887-892.
    • (2002) Eur. J. Plant Pathol. , vol.108 , pp. 887-892
    • Martínez-Culebras, P.V.1    Lázaro, A.2    Abad-Campos, P.3    Jordá, C.4
  • 23
    • 0036017852 scopus 로고    scopus 로고
    • The dialogue between viruses and hosts in compatible interactions
    • Maule, A., Leh, V., and Lederer, C. 2002. The dialogue between viruses and hosts in compatible interactions. Curr. Opin. Plant Biol. 5:279-284.
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 279-284
    • Maule, A.1    Leh, V.2    Lederer, C.3
  • 24
    • 1242342116 scopus 로고    scopus 로고
    • Variability and genetic structure of the population of Watermelon mosaic virus infecting melon in Spain
    • Moreno, I. M., Malpica, J. M., Díaz-Pendón, J. A., Moriones, E., Fraile, A., and García-Arenal, F. 2004. Variability and genetic structure of the population of Watermelon mosaic virus infecting melon in Spain. Virology 318:451-460.
    • (2004) Virology , vol.318 , pp. 451-460
    • Moreno, I.M.1    Malpica, J.M.2    Díaz-Pendón, J.A.3    Moriones, E.4    Fraile, A.5    García-Arenal, F.6
  • 25
    • 2142753891 scopus 로고    scopus 로고
    • The population genetics and evolutionary epidemiology of RNA viruses
    • Moya, A., Holmes, E. C., and González-Candelas, F. 2004. The population genetics and evolutionary epidemiology of RNA viruses. Nat. Rev. Microbiol. 2:279-288.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 279-288
    • Moya, A.1    Holmes, E.C.2    González-Candelas, F.3
  • 26
    • 0035559554 scopus 로고    scopus 로고
    • The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru
    • Mumford, R. A., and Metcalfe, E. J. 2001. The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru. Arch. Virol. 146:2455-2460.
    • (2001) Arch. Virol. , vol.146 , pp. 2455-2460
    • Mumford, R.A.1    Metcalfe, E.J.2
  • 28
    • 0022507362 scopus 로고
    • Simple methods to estimate the number of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and Gojobori, T. 1986. Simple methods to estimate the number of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 29
    • 0030203863 scopus 로고    scopus 로고
    • Treeview - An application to display phylogenetic trees on personal computers
    • Page, R. D. M. 1996. Treeview - An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 124:357-358.
    • (1996) Comput. Appl. Biosci. , vol.124 , pp. 357-358
    • Page, R.D.M.1
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • USA
    • Sanjuán, R., Moya, A., and Elena, S. F. 2004. The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101:8396-8401.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 33
    • 0024356449 scopus 로고
    • Statistical test for detecting gene conversion
    • Sawyer, S. 1989. Statistical test for detecting gene conversion. Mol. Biol. Evol. 6:526-538.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 34
    • 0036123577 scopus 로고    scopus 로고
    • Natural occurrence of Pepino mosaic virus in Lycopersicon species in central and southern Peru
    • Soler, S., Prohens, J., Díez, M. J., and Nuez, F. 2002. Natural occurrence of Pepino mosaic virus in Lycopersicon species in central and southern Peru. J. Phytopathol. 150:49-53.
    • (2002) J. Phytopathol. , vol.150 , pp. 49-53
    • Soler, S.1    Prohens, J.2    Díez, M.J.3    Nuez, F.4
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0037777638 scopus 로고    scopus 로고
    • High similarity between tomato isolates of Pepino mosaic virus suggests a common origin
    • Verhoeven, J. T. J., van der Vlugt, R. A. A., and Roenhorst, J. W. 2003. High similarity between tomato isolates of Pepino mosaic virus suggests a common origin. Eur. J. Plant Pathol. 109:419-425.
    • (2003) Eur. J. Plant Pathol. , vol.109 , pp. 419-425
    • Verhoeven, J.T.J.1    Van Der Vlugt, R.A.A.2    Roenhorst, J.W.3
  • 38
    • 3042761274 scopus 로고    scopus 로고
    • Roles for host factors in plant viral pathogenicity
    • Whitham, S. A., and Wang, Y. Z. 2004. Roles for host factors in plant viral pathogenicity. Curr. Opin. Plant Biol. 7:365-372.
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 365-372
    • Whitham, S.A.1    Wang, Y.Z.2
  • 40
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • Xia, X., and Xie, Z. 2001. DAMBE: Data analysis in molecular biology and evolution. J. Hered. 92:371-373.
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.