-
2
-
-
34250757252
-
An exact nonparametric method for inferring mosaic structure in sequence triplets
-
[Epub ahead of print]
-
Boni MF, Posada D, Feldman MW (2007) An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics [Epub ahead of print]
-
(2007)
Genetics
-
-
Boni, M.F.1
Posada, D.2
Feldman, M.W.3
-
3
-
-
0036232594
-
Biological and sequence comparison of Potato virus Y isolates associated with potato tuber necrotic ringspot disease
-
Boonham N, Walsh K, Hims M, Preston S, North J, Barker I (2002) Biological and sequence comparison of Potato virus Y isolates associated with potato tuber necrotic ringspot disease. Plant Pathol 51:117-126
-
(2002)
Plant Pathol
, vol.51
, pp. 117-126
-
-
Boonham, N.1
Walsh, K.2
Hims, M.3
Preston, S.4
North, J.5
Barker, I.6
-
4
-
-
34249925527
-
New isolates of the necrotic strain of potato virus Y (PVYN) found recently in Poland
-
Chrzanowska M (1991) New isolates of the necrotic strain of potato virus Y (PVYN) found recently in Poland. Potato Res 34:179-182
-
(1991)
Potato Res
, vol.34
, pp. 179-182
-
-
Chrzanowska, M.1
-
6
-
-
0036286694
-
Factors influencing PVY development and disease expression in three potato cultivars
-
Draper MD, Pasche JS, Gudmestad NC (2002) Factors influencing PVY development and disease expression in three potato cultivars. Am J Potato Res 79:155-165
-
(2002)
Am J Potato Res
, vol.79
, pp. 155-165
-
-
Draper, M.D.1
Pasche, J.S.2
Gudmestad, N.C.3
-
7
-
-
17644409447
-
Characterization of Potato virus Y nnp strain inducing veinal necrosis in pepper: A naturally occuring recombinant strain of PVY
-
Fanigliulo A, Comes S, Pacella R, Harrach B, Martin DP, Crescenzi A (2004) Characterization of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occuring recombinant strain of PVY. Arch Virol 150:709-720
-
(2004)
Arch Virol
, vol.150
, pp. 709-720
-
-
Fanigliulo, A.1
Comes, S.2
Pacella, R.3
Harrach, B.4
Martin, D.P.5
Crescenzi, A.6
-
8
-
-
0033753825
-
Sister-scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
-
Gibbs MJ, Armstrong JS, Gibbs AJ (2000) Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16:573-582
-
(2000)
Bioinformatics
, vol.16
, pp. 573-582
-
-
Gibbs, M.J.1
Armstrong, J.S.2
Gibbs, A.J.3
-
10
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
11
-
-
0036297144
-
Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products
-
Guyader S, Ducray DG (2002) Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products. J Gen Virol 83:1799-1807
-
(2002)
J Gen Virol
, vol.83
, pp. 1799-1807
-
-
Guyader, S.1
Ducray, D.G.2
-
12
-
-
0030771635
-
Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y
-
Jakab G, Droz E, Brigneti G, Baulcombe D, Malnoe P (1997) Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605, a Swiss necrotic isolate of potato virus Y. J Gen Virol 78:3141-3145
-
(1997)
J Gen Virol
, vol.78
, pp. 3141-3145
-
-
Jakab, G.1
Droz, E.2
Brigneti, G.3
Baulcombe, D.4
Malnoe, P.5
-
13
-
-
0028076485
-
Biological characterization of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers
-
LeRomancer M, Kerlan C, Nedellec M (1994) Biological characterization of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol 43:138-144
-
(1994)
Plant Pathol
, vol.43
, pp. 138-144
-
-
Leromancer, M.1
Kerlan, C.2
Nedellec, M.3
-
14
-
-
33744498350
-
Whole genome characterization of Potato Virus Y isolates collected in the western USA and their comparison to isolates from Europe and Canada
-
Lorenzen JH, Meacham T, Berger PH, Shiel PJ, Crosslin JM, Hamm PB, Kopp H (2006a) Whole genome characterization of Potato Virus Y isolates collected in the western USA and their comparison to isolates from Europe and Canada. Arch Virolog 151:1055-1074
-
(2006)
Arch Virolog
, vol.151
, pp. 1055-1074
-
-
Lorenzen, J.H.1
Meacham, T.2
Berger, P.H.3
Shiel, P.J.4
Crosslin, J.M.5
Hamm, P.B.6
Kopp, H.7
-
15
-
-
33745184011
-
A multiplex PCR assay to characterize Potato virus Y isolates and identify strain mixtures
-
Lorenzen JH, Piche LM, Gudmestad NC, Meacham T, Shiel P (2006b) A multiplex PCR assay to characterize Potato virus Y isolates and identify strain mixtures. Plant Dis 90:935-940
-
(2006)
Plant Dis
, vol.90
, pp. 935-940
-
-
Lorenzen, J.H.1
Piche, L.M.2
Gudmestad, N.C.3
Meacham, T.4
Shiel, P.5
-
16
-
-
0033824415
-
RDP: Detection of recombination amongst aligned sequences
-
Martin D, Rybicki E (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
17
-
-
13144283628
-
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
-
Martin DP, Posada D, Crandall KA, Williamson C (2005a) A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21:98-102
-
(2005)
AIDS Res Hum Retroviruses
, vol.21
, pp. 98-102
-
-
Martin, D.P.1
Posada, D.2
Crandall, K.A.3
Williamson, C.4
-
18
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin DP, Posada D, Williamson C (2005b) RDP2: Recombination detection and analysis from sequence alignments. Bioinformatics 21:260-262
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Posada, D.2
Williamson, C.3
-
19
-
-
0026708873
-
Analyzing the mosaic structure of genes
-
Maynard Smith J (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129
-
(1992)
J Mol Evol
, vol.34
, pp. 126-129
-
-
Maynard Smith, J.1
-
20
-
-
0001877694
-
Properties of strains of potato virus PVYN in North America
-
McDonald JG, Kristjansson GT (1993) Properties of strains of potato virus PVYN in North America. Plant Dis 77:87-89
-
(1993)
Plant Dis
, vol.77
, pp. 87-89
-
-
McDonald, J.G.1
Kristjansson, G.T.2
-
21
-
-
0036093833
-
A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR
-
Nie X, Singh RP (2002) A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR. J Virol Meth 104:41-54
-
(2002)
J Virol Meth
, vol.104
, pp. 41-54
-
-
Nie, X.1
Singh, R.P.2
-
22
-
-
0037232028
-
NTN strain Tu 660 by mutation rather than recombination
-
NTN strain Tu 660 by mutation rather than recombination. Virus Genes 26:39-47
-
(2003)
Virus Genes
, vol.26
, pp. 39-47
-
-
Nie, X.1
Singh, R.P.2
-
23
-
-
0141671903
-
NTN isolates by multiplex RT-PCR
-
NTN isolates by multiplex RT-PCR. J Virol Meth 113:69-77
-
(2003)
J Virol Meth
, vol.113
, pp. 69-77
-
-
Nie, X.1
Singh, R.P.2
-
24
-
-
17044424260
-
Molecular and pathological characterization of N:O isolates of the Potato virus Y from Manitoba, Canada
-
Nie X, Singh RP, Singh M (2004) Molecular and pathological characterization of N:O isolates of the Potato virus Y from Manitoba, Canada. Can J Plant Pathol 26:573-583
-
(2004)
Can J Plant Pathol
, vol.26
, pp. 573-583
-
-
Nie, X.1
Singh, R.P.2
Singh, M.3
-
25
-
-
0033590220
-
Possible emergence of new geminiviruses by frequent recombination
-
Padidam M, Sawyer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225
-
(1999)
Virology
, vol.265
, pp. 218-225
-
-
Padidam, M.1
Sawyer, S.2
Fauquet, C.M.3
-
26
-
-
9644266511
-
Diversity among PVY field isolates obtained from potatoes grown in the United States
-
Piche LM, Singh RP, Nie X, Gudmestad NC (2004) Diversity among PVY field isolates obtained from potatoes grown in the United States. Phytopath 94:1368-1375
-
(2004)
Phytopath
, vol.94
, pp. 1368-1375
-
-
Piche, L.M.1
Singh, R.P.2
Nie, X.3
Gudmestad, N.C.4
-
27
-
-
0035923699
-
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
-
Posada D, Crandall KA (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci USA 98:13757-13762
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 13757-13762
-
-
Posada, D.1
Crandall, K.A.2
-
28
-
-
0029766559
-
Frequent occurrence of recombinant potyvirus isolates
-
Revers F, Le Gall O, Candresse T, LeRomancer M, Dunez J (1996) Frequent occurrence of recombinant potyvirus isolates. J Gen Virol 77:1953-1965
-
(1996)
J Gen Virol
, vol.77
, pp. 1953-1965
-
-
Revers, F.1
Le Gall, O.2
Candresse, T.3
Leromancer, M.4
Dunez, J.5
-
29
-
-
0024655388
-
Nucleotide sequence of potato virus Y (N Strain) genomic RNA
-
Robaglia C, Durand-Tardif M, Tronchet M, Boudazin G, Astier-Manifacier S, Casse-Delbart F (1989) Nucleotide sequence of potato virus Y (N Strain) genomic RNA. J Gen Virol 70:935-947
-
(1989)
J Gen Virol
, vol.70
, pp. 935-947
-
-
Robaglia, C.1
Durand-Tardif, M.2
Tronchet, M.3
Boudazin, G.4
Astier-Manifacier, S.5
Casse-Delbart, F.6
-
30
-
-
0033793521
-
Consequences of recombination on traditional phylogenetic analysis
-
Schierup MH, Hein J (2000) Consequences of recombination on traditional phylogenetic analysis. Genetics 156:879-891
-
(2000)
Genetics
, vol.156
, pp. 879-891
-
-
Schierup, M.H.1
Hein, J.2
-
31
-
-
33846782928
-
Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers
-
Schubert J, Fomitcheva V, Sztangret-Wisniewska S (2007) Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers. J Virol Meth 140:66-74
-
(2007)
J Virol Meth
, vol.140
, pp. 66-74
-
-
Schubert, J.1
Fomitcheva, V.2
Sztangret-Wisniewska, S.3
-
33
-
-
33744488608
-
Types of potato virus Y necrotic to tobacco: History and recent observation
-
Silberschmidt K (1960) Types of potato virus Y necrotic to tobacco: history and recent observation. Am Potato J 37:151-159
-
(1960)
Am Potato J
, vol.37
, pp. 151-159
-
-
Silberschmidt, K.1
-
34
-
-
0001924802
-
Some notes on a suspected variant of solanum virus 2 (potato virus Y)
-
Smith KM, Dennis RWG (1940) Some notes on a suspected variant of solanum virus 2 (potato virus Y). Ann Appl Biolog 27:65-70
-
(1940)
Ann Appl Biolog
, vol.27
, pp. 65-70
-
-
Smith, K.M.1
Dennis, R.W.G.2
-
35
-
-
0037339624
-
Potato leafroll virus: A classic pathogen shows some new tricks
-
Taliansky M, Mayo MA, Barker H (2003) Potato leafroll virus: a classic pathogen shows some new tricks. Mol Plant Pathol 4:81-89
-
(2003)
Mol Plant Pathol
, vol.4
, pp. 81-89
-
-
Taliansky, M.1
Mayo, M.A.2
Barker, H.3
-
36
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
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