메뉴 건너뛰기




Volumn 151, Issue 5, 2006, Pages 933-946

A phylogenetic survey of recombination frequency in plant RNA viruses

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 33645972304     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0675-x     Document Type: Review
Times cited : (194)

References (48)
  • 1
    • 0032977607 scopus 로고    scopus 로고
    • Recombination in RNA viruses and in virus-resistant transgenic plants
    • R Aaziz M Tepfer 1999 Recombination in RNA viruses and in virus-resistant transgenic plants J Gen Virol 80 1339 1346
    • (1999) J Gen Virol , vol.80 , pp. 1339-1346
    • Aaziz, R.1    Tepfer, M.2
  • 2
    • 0030434465 scopus 로고    scopus 로고
    • Recombination in plants expressing viral transgenes
    • RF Allison WL Schneider AE Greene 1996 Recombination in plants expressing viral transgenes Semin Virol 7 417 422
    • (1996) Semin Virol , vol.7 , pp. 417-422
    • Allison, R.F.1    Schneider, W.L.2    Greene, A.E.3
  • 3
    • 2642659238 scopus 로고
    • Molecular systematics of the flaviviruses and their relatives
    • Gibbs AJ, Calisher CH, Garcia-Arenal F (eds), Cambridge University Press, Cambridge
    • Blok J, Gibbs AJ (1995) Molecular systematics of the flaviviruses and their relatives. In: Gibbs AJ, Calisher CH, Garcia-Arenal F (eds), Molecular basis of virus evolution. Cambridge University Press, Cambridge, pp 270-289
    • (1995) Molecular Basis of Virus Evolution , pp. 270-289
    • Blok, J.1    Gibbs, A.J.2
  • 4
    • 12344296268 scopus 로고    scopus 로고
    • Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus
    • J Bonnet A Fraile S Sacristan JM Malpica F Garcia-Arenal 2005 Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus Virology 332 359 368
    • (2005) Virology , vol.332 , pp. 359-368
    • Bonnet, J.1    Fraile, A.2    Sacristan, S.3    Malpica, J.M.4    Garcia-Arenal, F.5
  • 5
    • 0141850272 scopus 로고    scopus 로고
    • Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: An evolutionary history of the Yam mild mosaic virus (YMMV)
    • M Bousalem S Dallot S Fuji KT Natsuaki 2003 Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: an evolutionary history of the Yam mild mosaic virus (YMMV) Infect Genet Evol 3 189 206
    • (2003) Infect Genet Evol , vol.3 , pp. 189-206
    • Bousalem, M.1    Dallot, S.2    Fuji, S.3    Natsuaki, K.T.4
  • 6
    • 0033970716 scopus 로고    scopus 로고
    • High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: A contribution to understanding potyvirus evolution
    • M Bousalem EJP Douzery D Fargette 2000 High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution J Gen Virol 81 243 255
    • (2000) J Gen Virol , vol.81 , pp. 243-255
    • Bousalem, M.1    Douzery, E.J.P.2    Fargette, D.3
  • 7
    • 0022524928 scopus 로고
    • Genetic recombination between RNA components of a multipartite plant virus
    • JJ Bujarski P Kaesberg 1986 Genetic recombination between RNA components of a multipartite plant virus Nature 321 528 531
    • (1986) Nature , vol.321 , pp. 528-531
    • Bujarski, J.J.1    Kaesberg, P.2
  • 8
    • 0142088791 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses
    • ER Chare EA Gould EC Holmes 2003 Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses J Gen Virol 84 2691 2703
    • (2003) J Gen Virol , vol.84 , pp. 2691-2703
    • Chare, E.R.1    Gould, E.A.2    Holmes, E.C.3
  • 10
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations for fitness and survival
    • E Domingo JJ Holland 1997 RNA virus mutations for fitness and survival Annu Rev Microbiol 51 151 178
    • (1997) Annu Rev Microbiol , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 12
    • 0032748221 scopus 로고    scopus 로고
    • Rate of deleterious mutation and the distribution of its effects on fitness in Vesicular stomatitis virus
    • SF Elena A Moya 1999 Rate of deleterious mutation and the distribution of its effects on fitness in Vesicular stomatitis virus J Evol Biol 12 1078 1088
    • (1999) J Evol Biol , vol.12 , pp. 1078-1088
    • Elena, S.F.1    Moya, A.2
  • 13
    • 0031015206 scopus 로고    scopus 로고
    • Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus
    • A Fraile JL Alonso-Prados MA Aranda JJ Bernal JM Malpica F Garcia-Arenal 1997 Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus J Virol 71 934 940
    • (1997) J Virol , vol.71 , pp. 934-940
    • Fraile, A.1    Alonso-Prados, J.L.2    Aranda, M.A.3    Bernal, J.J.4    Malpica, J.M.5    Garcia-Arenal, F.6
  • 14
    • 18044386958 scopus 로고    scopus 로고
    • Recombination every day: Abundant recombination in a virus during a single multi-cellular host infection
    • R Froissart D Rose M Uzest L Galibert S Blanc Y Michalakis 2005 Recombination every day: Abundant recombination in a virus during a single multi-cellular host infection PloS Biol 3 e89
    • (2005) PloS Biol , vol.3 , pp. 89
    • Froissart, R.1    Rose, D.2    Uzest, M.3    Galibert, L.4    Blanc, S.5    Michalakis, Y.6
  • 15
    • 0026580846 scopus 로고
    • Agroinfection of transgenic plants leads to viable Cauliflower mosaic virus by intermolecular recombination
    • S Gal B Pisan T Hohn N Grimsley B Hohn 1992 Agroinfection of transgenic plants leads to viable Cauliflower mosaic virus by intermolecular recombination Virology 187 525 533
    • (1992) Virology , vol.187 , pp. 525-533
    • Gal, S.1    Pisan, B.2    Hohn, T.3    Grimsley, N.4    Hohn, B.5
  • 16
    • 0002590141 scopus 로고
    • The luteovirus supergroup: Rampant recombination and persistent partnerships
    • Gibbs AJ, Calisher CH, Garcia-Arenal F (eds), Cambridge University Press, Cambridge
    • Gibbs M (1995) The luteovirus supergroup: rampant recombination and persistent partnerships. In: Gibbs AJ, Calisher CH, Garcia-Arenal F (eds), Molecular basis of virus evolution. Cambridge University Press, Cambridge, pp 351-368
    • (1995) Molecular Basis of Virus Evolution , pp. 351-368
    • Gibbs, M.1
  • 17
    • 0028278710 scopus 로고
    • Recombination between viral RNA and transgenic plant transcripts
    • AE Greene RF Allison 1994 Recombination between viral RNA and transgenic plant transcripts Science 263 1423 1425
    • (1994) Science , vol.263 , pp. 1423-1425
    • Greene, A.E.1    Allison, R.F.2
  • 18
    • 0030296835 scopus 로고    scopus 로고
    • Deletions in the 3′ untranslated region of Cowpea chlorotic mottle virus transgene reduce recovery of recombinant viruses in transgenic plants
    • AE Greene RF Allison 1996 Deletions in the 3′ untranslated region of Cowpea chlorotic mottle virus transgene reduce recovery of recombinant viruses in transgenic plants Virology 225 231 234
    • (1996) Virology , vol.225 , pp. 231-234
    • Greene, A.E.1    Allison, R.F.2
  • 20
    • 0025635705 scopus 로고
    • Retroviral recombination and reverse transcription
    • WS Hu HM Temin 1990 Retroviral recombination and reverse transcription Science 250 1227 1233
    • (1990) Science , vol.250 , pp. 1227-1233
    • Hu, W.S.1    Temin, H.M.2
  • 22
    • 0026602984 scopus 로고
    • RNA recombination in animal and plant viruses
    • MMC Lai 1992 RNA recombination in animal and plant viruses Microbiol Rev 56 61 79
    • (1992) Microbiol Rev , vol.56 , pp. 61-79
    • Lai, M.M.C.1
  • 23
    • 0024425153 scopus 로고
    • Homologous potyvirus and flavivirus proteins belonging to a superfamily of helicase-like proteins
    • S Lain JL Riechmann MT Martin JA Garcia 1989 Homologous potyvirus and flavivirus proteins belonging to a superfamily of helicase-like proteins Gene 82 357 362
    • (1989) Gene , vol.82 , pp. 357-362
    • Lain, S.1    Riechmann, J.L.2    Martin, M.T.3    Garcia, J.A.4
  • 24
    • 0029064916 scopus 로고
    • The nucleotide sequence of the RNA-2 of an isolate of the English serotype of Tomato black ring virus: RNA recombination in the history of nepoviruses
    • OL Le Gall M Lanneau T Candresse J Dunez 1995 The nucleotide sequence of the RNA-2 of an isolate of the English serotype of Tomato black ring virus: RNA recombination in the history of nepoviruses J Gen Virol 76 1279 1283
    • (1995) J Gen Virol , vol.76 , pp. 1279-1283
    • Le Gall, O.L.1    Lanneau, M.2    Candresse, T.3    Dunez, J.4
  • 25
    • 0037234755 scopus 로고    scopus 로고
    • Genetic diversity and biological variation among California isolates of Cucumber mosaic virus
    • HX Lin L Rubio A Smythe M Jiminez BW Falk 2003 Genetic diversity and biological variation among California isolates of Cucumber mosaic virus J Gen Virol 84 249 258
    • (2003) J Gen Virol , vol.84 , pp. 249-258
    • Lin, H.X.1    Rubio, L.2    Smythe, A.3    Jiminez, M.4    Falk, B.W.5
  • 26
    • 0030862820 scopus 로고    scopus 로고
    • Natural recombination among plant virus genomes: Evidence from tobraviruses
    • S [tmp] MacFarlane 1997 Natural recombination among plant virus genomes: evidence from tobraviruses Semin Virol 8 25 31
    • (1997) Semin Virol , vol.8 , pp. 25-31
    • MacFarlane, S.1
  • 27
  • 28
    • 0030900659 scopus 로고    scopus 로고
    • Engineering of homologous recombination hotspots with AU-rich sequences in Brome mosaic virus
    • PD Nagy JJ Bujarski 1997 Engineering of homologous recombination hotspots with AU-rich sequences in Brome mosaic virus J Virol 71 3799 3810
    • (1997) J Virol , vol.71 , pp. 3799-3810
    • Nagy, P.D.1    Bujarski, J.J.2
  • 30
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • M Padidam S Sawyer CM Fauquet 1999 Possible emergence of new geminiviruses by frequent recombination Virology 265 218 255
    • (1999) Virology , vol.265 , pp. 218-255
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 32
    • 3142735308 scopus 로고    scopus 로고
    • Characterisation of a new potyvirus species infecting meadow saffron (Colchicum autumnale)
    • A Poutaraud C Desbiez O Lemaire H Lecoq E Herrbach 2004 Characterisation of a new potyvirus species infecting meadow saffron (Colchicum autumnale) Arch Virol 149 1267 1277
    • (2004) Arch Virol , vol.149 , pp. 1267-1277
    • Poutaraud, A.1    Desbiez, C.2    Lemaire, O.3    Lecoq, H.4    Herrbach, E.5
  • 33
    • 0030614142 scopus 로고    scopus 로고
    • Mechanisms of plant virus evolution
    • MJ Roossinck 1997 Mechanisms of plant virus evolution Annu Rev Phytopathol 35 191 209
    • (1997) Annu Rev Phytopathol , vol.35 , pp. 191-209
    • Roossinck, M.J.1
  • 34
    • 0034864956 scopus 로고    scopus 로고
    • Genetic variation of Citrus tristeza virus isolates from California and Spain: Evidence for mixed infections and recombination
    • L Rubio MA Ayllon P Kong A Fernandez M Polek J Guerri P Moreno BW Falk 2001 Genetic variation of Citrus tristeza virus isolates from California and Spain: Evidence for mixed infections and recombination J Virol 75 8054 8062
    • (2001) J Virol , vol.75 , pp. 8054-8062
    • Rubio, L.1    Ayllon, M.A.2    Kong, P.3    Fernandez, A.4    Polek, M.5    Guerri, J.6    Moreno, P.7    Falk, B.W.8
  • 35
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • S Sawyer 1989 Statistical tests for detecting gene conversion Mol Biol Evol 6 526 538
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 36
    • 0027142836 scopus 로고
    • Expansion of viral host range through comple- mentation and recombination in transgenic plants
    • JE Schoelz WM Wintermantel 1993 Expansion of viral host range through comple- mentation and recombination in transgenic plants Plant Cell 5 1669 1679
    • (1993) Plant Cell , vol.5 , pp. 1669-1679
    • Schoelz, J.E.1    Wintermantel, W.M.2
  • 37
    • 0000362473 scopus 로고
    • Control of plant virus diseases by pathogen-derived resistance in transgenic plants
    • K Scholthof HB Scholthof AO Jackson 1993 Control of plant virus diseases by pathogen-derived resistance in transgenic plants Plant Physiol 102 7 12
    • (1993) Plant Physiol , vol.102 , pp. 7-12
    • Scholthof, K.1    Scholthof, H.B.2    Jackson, A.O.3
  • 38
    • 1242274560 scopus 로고    scopus 로고
    • The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: Implications for the mechanism of RNA recombination
    • N Shapka PD Nagy 2004 The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: Implications for the mechanism of RNA recombination J Virol 78 2288 2300
    • (2004) J Virol , vol.78 , pp. 2288-2300
    • Shapka, N.1    Nagy, P.D.2
  • 40
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • K Strimmer A von Haesler 1996 Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies Mol Biol Evol 13 964 969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haesler, A.2
  • 41
    • 0037294730 scopus 로고    scopus 로고
    • RNA recombination between cucumoviruses: Possible role of predicted stem-loop structures and an internal subgenomic promoter-like motif
    • M Suzuki T Hibi C Masuta 2003 RNA recombination between cucumoviruses: possible role of predicted stem-loop structures and an internal subgenomic promoter-like motif Virology 306 77 86
    • (2003) Virology , vol.306 , pp. 77-86
    • Suzuki, M.1    Hibi, T.2    Masuta, C.3
  • 43
    • 4544310024 scopus 로고    scopus 로고
    • Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus
    • Z Tan Y Wada J Chen K Ohshima 2004 Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus J Gen Virol 85 2683 2696
    • (2004) J Gen Virol , vol.85 , pp. 2683-2696
    • Tan, Z.1    Wada, Y.2    Chen, J.3    Ohshima, K.4
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignments aided by quality analysis tools
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignments aided by quality analysis tools Nucleic Acids Res 25 4876 4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 11344264156 scopus 로고    scopus 로고
    • Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate
    • MC Vives L Rubio A Sambade TE Mirkov P Moreno J Guerri 2005 Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate Virology 331 232 237
    • (2005) Virology , vol.331 , pp. 232-237
    • Vives, M.C.1    Rubio, L.2    Sambade, A.3    Mirkov, T.E.4    Moreno, P.5    Guerri, J.6
  • 46
    • 0032889340 scopus 로고    scopus 로고
    • Defective and defective interfering RNAs of monopartite plus-strand RNA plant viruses
    • KA White TJ Morris 1999 Defective and defective interfering RNAs of monopartite plus-strand RNA plant viruses Curr Top Microbiol Immunol 239 1 17
    • (1999) Curr Top Microbiol Immunol , vol.239 , pp. 1-17
    • White, K.A.1    Morris, T.J.2
  • 47
    • 0030245736 scopus 로고    scopus 로고
    • Isolation of recombinant virus between Cauliflower mosaic virus and a viral gene in transgenic plants under conditions of moderate selection pressure
    • WM Wintermantel JE Schoelz 1996 Isolation of recombinant virus between Cauliflower mosaic virus and a viral gene in transgenic plants under conditions of moderate selection pressure Virology 223 156 164
    • (1996) Virology , vol.223 , pp. 156-164
    • Wintermantel, W.M.1    Schoelz, J.E.2
  • 48
    • 0032853634 scopus 로고    scopus 로고
    • Evolutionary aspects of recombination in RNA viruses
    • M Worobey EC Holmes 1999 Evolutionary aspects of recombination in RNA viruses J Gen Virol 80 2535 2543
    • (1999) J Gen Virol , vol.80 , pp. 2535-2543
    • Worobey, M.1    Holmes, E.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.