메뉴 건너뛰기




Volumn 42, Issue 6, 2012, Pages 697-705

Computational identification of novel histone deacetylase inhibitors by docking based QSAR

Author keywords

3D QSAR; Anti cancer; Benzimidazole and imidazole inhibitors; Docking; HDAC; Pharmacophore; Virtual screening

Indexed keywords

3D-QSAR; ANTI-CANCER; BENZIMIDAZOLES; HDAC; PHARMACOPHORES; VIRTUAL SCREENING;

EID: 84861225735     PISSN: 00104825     EISSN: 18790534     Source Type: Journal    
DOI: 10.1016/j.compbiomed.2012.04.001     Document Type: Article
Times cited : (42)

References (28)
  • 1
    • 78649706802 scopus 로고    scopus 로고
    • HDAC1, A novel marker for benign teratomas
    • Simboeck E., Di Croce L. HDAC1, A novel marker for benign teratomas. EMBO J. 2010, 29(23):3893-3895.
    • (2010) EMBO J. , vol.29 , Issue.23 , pp. 3893-3895
    • Simboeck, E.1    Di Croce, L.2
  • 2
    • 0030916336 scopus 로고    scopus 로고
    • What's up and down with histone deacetylation and transcription
    • Pazin M.J., Kadonaga J.T. What's up and down with histone deacetylation and transcription. Cell 1997, 89(3):325-328.
    • (1997) Cell , vol.89 , Issue.3 , pp. 325-328
    • Pazin, M.J.1    Kadonaga, J.T.2
  • 4
    • 0036906832 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors: from target to clinical trials
    • Kelly W.K., O'Connor O.A., Marks P.A. Histone deacetylase inhibitors: from target to clinical trials. Expert Opin. Investig. Drugs 2002, 11(12):1695-1713.
    • (2002) Expert Opin. Investig. Drugs , vol.11 , Issue.12 , pp. 1695-1713
    • Kelly, W.K.1    O'Connor, O.A.2    Marks, P.A.3
  • 6
    • 0034908978 scopus 로고    scopus 로고
    • Inhibitors of Histone Deacetylase Are Potentially Effective Anticancer Agents
    • Marks P.A., Rifkind R.A., Richon V.M., Breslow R. Inhibitors of Histone Deacetylase Are Potentially Effective Anticancer Agents. Clin. Cancer Res. 2001, 7(4):759-760.
    • (2001) Clin. Cancer Res. , vol.7 , Issue.4 , pp. 759-760
    • Marks, P.A.1    Rifkind, R.A.2    Richon, V.M.3    Breslow, R.4
  • 7
    • 0035965343 scopus 로고    scopus 로고
    • Histone Deacetylase is a Direct Target of Valproic Acid a potent anticonvulsant, mood stabilizer, and teratogen
    • Phiel C.J., Zhang F., Huang E.Y., Guenther M.G., Lazar M.A., Klein P.S. Histone Deacetylase is a Direct Target of Valproic Acid a potent anticonvulsant, mood stabilizer, and teratogen. J. Biol. Chem. 2001, 276(390):6734-6741.
    • (2001) J. Biol. Chem. , vol.276 , Issue.390 , pp. 6734-6741
    • Phiel, C.J.1    Zhang, F.2    Huang, E.Y.3    Guenther, M.G.4    Lazar, M.A.5    Klein, P.S.6
  • 8
    • 0035024737 scopus 로고    scopus 로고
    • Histone deacetylase: a target for antiproliferative and antiprotozoal agents
    • Meinke P.T., Liberator P. Histone deacetylase: a target for antiproliferative and antiprotozoal agents. Curr. Med. Chem. 2001, 8(2):11-235.
    • (2001) Curr. Med. Chem. , vol.8 , Issue.2 , pp. 11-235
    • Meinke, P.T.1    Liberator, P.2
  • 9
    • 28044471827 scopus 로고    scopus 로고
    • Acetylation and deacetylation of non-histone proteins
    • Glozak M.A., Sengupta N., Zhang X., Seto E. Acetylation and deacetylation of non-histone proteins. Gene 2005, 363:15-23.
    • (2005) Gene , vol.363 , pp. 15-23
    • Glozak, M.A.1    Sengupta, N.2    Zhang, X.3    Seto, E.4
  • 10
    • 30344477367 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer
    • Minucci S., Pelicci P.G. Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer. Nat. Rev. Cancer 2006, 6(1):38-51.
    • (2006) Nat. Rev. Cancer , vol.6 , Issue.1 , pp. 38-51
    • Minucci, S.1    Pelicci, P.G.2
  • 11
  • 12
    • 0024996768 scopus 로고
    • Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A
    • Yoshida M., Kijima M., Akita M., Beppu T. Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A. J. Biol. Chem. 1990 1717, 265(28):4-17179.
    • (1990) J. Biol. Chem. , vol.265 , Issue.28 , pp. 4-17179
    • Yoshida, M.1    Kijima, M.2    Akita, M.3    Beppu, T.4
  • 14
    • 84861225216 scopus 로고    scopus 로고
    • User manual Phase, version 3.0, Schrödinger, LLC. New York. NY.
    • User manual Phase, version 3.0, Schrödinger, LLC. New York. NY. 2008.
    • (2008)
  • 15
    • 52449112167 scopus 로고    scopus 로고
    • Residues in the 11 A channel of histone deacetylase 1 promote catalytic activity: implications for designing isoform-selective histone deacetylase inhibitors
    • Weerasinghe S.V., Estiu G., Wiest O., Pflum M.K. Residues in the 11 A channel of histone deacetylase 1 promote catalytic activity: implications for designing isoform-selective histone deacetylase inhibitors. J. Med. Chem 2008, 51(18):5542-5551.
    • (2008) J. Med. Chem , vol.51 , Issue.18 , pp. 5542-5551
    • Weerasinghe, S.V.1    Estiu, G.2    Wiest, O.3    Pflum, M.K.4
  • 16
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all atom force field on conformational energetic and properties of organic liquids
    • William L.J., David S.M., Julian T.R. Development and testing of the OPLS all atom force field on conformational energetic and properties of organic liquids. J. Am. Chem. Soc 1996, 118(45):11225-11236.
    • (1996) J. Am. Chem. Soc , vol.118 , Issue.45 , pp. 11225-11236
    • William, L.J.1    David, S.M.2    Julian, T.R.3
  • 17
    • 43749108844 scopus 로고    scopus 로고
    • SAR and QSAR study on 2-aminothiazole derivatives, modulators of transcriptional repression in Huntington's disease
    • Leone S., Mutti C., Kazantsev A., Sturlese M., Moro S., Cattaneo E., Rigamonti D., Contini A. SAR and QSAR study on 2-aminothiazole derivatives, modulators of transcriptional repression in Huntington's disease. Med. Chem. 2008, 16(10):5695-5703.
    • (2008) Med. Chem. , vol.16 , Issue.10 , pp. 5695-5703
    • Leone, S.1    Mutti, C.2    Kazantsev, A.3    Sturlese, M.4    Moro, S.5    Cattaneo, E.6    Rigamonti, D.7    Contini, A.8
  • 19
    • 33845868822 scopus 로고    scopus 로고
    • PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results
    • Dixon S.L., Smondyrev A.M., Knoll E., Rao H.S.N., Shaw D.E., Friesner R.A. PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results. J. Comput. Aided Mol. Des. 2006, 20(10):647-671.
    • (2006) J. Comput. Aided Mol. Des. , vol.20 , Issue.10 , pp. 647-671
    • Dixon, S.L.1    Smondyrev, A.M.2    Knoll, E.3    Rao, H.S.N.4    Shaw, D.E.5    Friesner, R.A.6
  • 20
    • 84861225217 scopus 로고    scopus 로고
    • Pharmacophore generation and atom-based 3D-QSAR of novel quinoline-3-carbonitrile derivatives as Tpl2 kinase inhibitors
    • [Epub ahead of print]
    • Teli M.K., Rajanikant G.K. Pharmacophore generation and atom-based 3D-QSAR of novel quinoline-3-carbonitrile derivatives as Tpl2 kinase inhibitors. J. Enzyme Inhib. Med. Chem. 2011, [Epub ahead of print].
    • (2011) J. Enzyme Inhib. Med. Chem.
    • Teli, M.K.1    Rajanikant, G.K.2
  • 21
    • 78650177876 scopus 로고    scopus 로고
    • Pharmacophore generation and atom-based 3D-QSAR of novel 2-(4-methylsulfonylphenyl) pyrimidines as COX-2 inhibitors
    • Shah U.A., Deokar H.S, Kadam S.S., Kulkarni V.M. Pharmacophore generation and atom-based 3D-QSAR of novel 2-(4-methylsulfonylphenyl) pyrimidines as COX-2 inhibitors. Mol. Divers 2010, 14(3):559-568.
    • (2010) Mol. Divers , vol.14 , Issue.3 , pp. 559-568
    • Shah, U.A.1    Deokar, H.S.2    Kadam, S.S.3    Kulkarni, V.M.4
  • 22
    • 22444434044 scopus 로고    scopus 로고
    • Receiver operating characteristic analysis: a primer
    • Eng J. Receiver operating characteristic analysis: a primer. Acad. Radiol. 2005, 12(7):909-916.
    • (2005) Acad. Radiol. , vol.12 , Issue.7 , pp. 909-916
    • Eng, J.1
  • 23
    • 78650194240 scopus 로고    scopus 로고
    • 3d QSAR of aminophenyl benzamide derivatives as histone deacetylase inhibitors
    • Tanwar O.P.M., Karthikeyan C., Moorthy N.S., Trivedi P. 3d QSAR of aminophenyl benzamide derivatives as histone deacetylase inhibitors. Med. Chem. 2010, 6(5):277-285.
    • (2010) Med. Chem. , vol.6 , Issue.5 , pp. 277-285
    • Tanwar, O.P.M.1    Karthikeyan, C.2    Moorthy, N.S.3    Trivedi, P.4
  • 24
    • 84861223535 scopus 로고    scopus 로고
    • Glide, version 5.5, Schrödinger, LLC, New York, NY
    • Glide, version 5.5, Schrödinger, LLC, New York, NY, 2009.
    • (2009)
  • 25
    • 12144289984 scopus 로고    scopus 로고
    • Mainz DT. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
    • Friesner R.A., Banks J.L., Murphy R.B., Halgren T.A., Klicic J.J. Mainz DT. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J. Med. Chem. 2004, 47(7):1739-1749.
    • (2004) J. Med. Chem. , vol.47 , Issue.7 , pp. 1739-1749
    • Friesner, R.A.1    Banks, J.L.2    Murphy, R.B.3    Halgren, T.A.4    Klicic, J.J.5
  • 26
    • 65249163549 scopus 로고    scopus 로고
    • Novel inhibitors of human histone deacetylase (HDAC) identified by QSAR modeling of known inhibitors, virtual screening, and experimental validation
    • Tang H., Wang X.S., Huang X.P., Roth B.L, Butler K.V., Kozikowski A.P., Jung M., Tropsha.A. Novel inhibitors of human histone deacetylase (HDAC) identified by QSAR modeling of known inhibitors, virtual screening, and experimental validation. J. Chem. Inf. Model. 2009, 49(2):461-476.
    • (2009) J. Chem. Inf. Model. , vol.49 , Issue.2 , pp. 461-476
    • Tang, H.1    Wang, X.S.2    Huang, X.P.3    Roth, B.L.4    Butler, K.V.5    Kozikowski, A.P.6    Jung, M.7    Tropsha, A.8
  • 28
    • 75949090367 scopus 로고    scopus 로고
    • 3D-QSAR study of c-Src kinase inhibitors based on docking
    • Cao R., Mi N., Zhang H. 3D-QSAR study of c-Src kinase inhibitors based on docking. J. Mol. Model 2010, 16(2):361-375.
    • (2010) J. Mol. Model , vol.16 , Issue.2 , pp. 361-375
    • Cao, R.1    Mi, N.2    Zhang, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.