-
1
-
-
67649984595
-
A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human
-
Hatanaka Y., Nagasaki M., Yamaguchi R., Obayashi T., Numata K., Fujita A., Shimamura T., Tamada Y., Imoto S., Kinoshita K., Nakai K., Miyano S. A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. Genome Inform. 2008, 20:212-221.
-
(2008)
Genome Inform.
, vol.20
, pp. 212-221
-
-
Hatanaka, Y.1
Nagasaki, M.2
Yamaguchi, R.3
Obayashi, T.4
Numata, K.5
Fujita, A.6
Shimamura, T.7
Tamada, Y.8
Imoto, S.9
Kinoshita, K.10
Nakai, K.11
Miyano, S.12
-
2
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee H.K., Hsu A.K., Sajdak J., Qin J., Pavlidis P. Coexpression analysis of human genes across many microarray data sets. Genome Res. 2004, 14:1085-1094.
-
(2004)
Genome Res.
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
Hsu, A.K.2
Sajdak, J.3
Qin, J.4
Pavlidis, P.5
-
3
-
-
73249114746
-
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression
-
Obayashi T., Kinoshita K. Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res. 2009, 16:249-260.
-
(2009)
DNA Res.
, vol.16
, pp. 249-260
-
-
Obayashi, T.1
Kinoshita, K.2
-
4
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart J.M., Segal E., Koller D., Kim S.K. A gene-coexpression network for global discovery of conserved genetic modules. Science 2003, 302:249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
5
-
-
78651280402
-
COXPRESdb: a database to compare gene coexpression in seven model animals
-
Obayashi T., Kinoshita K. COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. 2011, 39:D1016-D1022.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Obayashi, T.1
Kinoshita, K.2
-
6
-
-
58049141153
-
Microarray-based gene set analysis: a comparison of current methods
-
Song S., Black M.A. Microarray-based gene set analysis: a comparison of current methods. BMC Bioinformatics 2008, 9:502.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 502
-
-
Song, S.1
Black, M.A.2
-
7
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
Huang D.W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
8
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The gene ontology consortium
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G. Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat. Genet. 2000, 25:25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
9
-
-
76949085818
-
ConceptGen: a gene set enrichment and gene set relation mapping tool
-
Sartor M.A., Mahavisno V., Keshamouni V.G., Cavalcoli J., Wright Z., Karnovsky A., Kuick R., Jagadish H.V., Mirel B., Weymouth T., Athey B., Omenn G.S. ConceptGen: a gene set enrichment and gene set relation mapping tool. Bioinformatics 2010, 26:456-463.
-
(2010)
Bioinformatics
, vol.26
, pp. 456-463
-
-
Sartor, M.A.1
Mahavisno, V.2
Keshamouni, V.G.3
Cavalcoli, J.4
Wright, Z.5
Karnovsky, A.6
Kuick, R.7
Jagadish, H.V.8
Mirel, B.9
Weymouth, T.10
Athey, B.11
Omenn, G.S.12
-
10
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
-
Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
11
-
-
33751384465
-
GATHER: a systems approach to interpreting genomic signatures
-
Chang J.T., Nevins J.R. GATHER: a systems approach to interpreting genomic signatures. Bioinformatics 2006, 22:2926-2933.
-
(2006)
Bioinformatics
, vol.22
, pp. 2926-2933
-
-
Chang, J.T.1
Nevins, J.R.2
-
12
-
-
75549084555
-
GeneSigDB - a curated database of gene expression signatures
-
Culhane A.C., Schwarzl T., Sultana R., Picard K.C., Picard S.C., Lu T.H., Franklin K.R., French S.J., Papenhausen G., Correll M., Quackenbush J. GeneSigDB - a curated database of gene expression signatures. Nucleic Acids Res. 2010, 38:D716-D725.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Culhane, A.C.1
Schwarzl, T.2
Sultana, R.3
Picard, K.C.4
Picard, S.C.5
Lu, T.H.6
Franklin, K.R.7
French, S.J.8
Papenhausen, G.9
Correll, M.10
Quackenbush, J.11
-
13
-
-
79958135926
-
Molecular Signatures Database (MSigDB) 3.0
-
Liberzon A., Subramanian A., Pinchback R., Thorvaldsdóttir H., Tamayo P., Mesirov J.P. Molecular Signatures Database (MSigDB) 3.0. Bioinformatics 2011, 27:1739-1740.
-
(2011)
Bioinformatics
, vol.27
, pp. 1739-1740
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdóttir, H.4
Tamayo, P.5
Mesirov, J.P.6
-
14
-
-
67849099281
-
WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis
-
Glez-Peña D., Gómez-López G., Pisano D.G., Fdez-Riverola F. WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. Nucleic Acids Res. 2007, 37:W329-W334.
-
(2007)
Nucleic Acids Res.
, vol.37
-
-
Glez-Peña, D.1
Gómez-López, G.2
Pisano, D.G.3
Fdez-Riverola, F.4
-
15
-
-
34548860112
-
The Edinburgh human metabolic network reconstruction and its functional analysis
-
Ma H., Sorokin A., Mazein A., Selkov A., Selkov E., Demin O., Goryanin I. The Edinburgh human metabolic network reconstruction and its functional analysis. Mol. Syst. Biol. 2007, 3:135.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 135
-
-
Ma, H.1
Sorokin, A.2
Mazein, A.3
Selkov, A.4
Selkov, E.5
Demin, O.6
Goryanin, I.7
-
16
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
Romero P., Wagg J., Green M.L., Kaiser D., Krummenacker M., Karp P.D. Computational prediction of human metabolic pathways from the complete human genome. Genome Biol. 2005, 6:R2.
-
(2005)
Genome Biol.
, vol.6
-
-
Romero, P.1
Wagg, J.2
Green, M.L.3
Kaiser, D.4
Krummenacker, M.5
Karp, P.D.6
-
17
-
-
33947159380
-
Event ontology: a pathway-centric ontology for biological processes
-
Kushida T., Takagi T., Fukuda K.I. Event ontology: a pathway-centric ontology for biological processes. Pac. Symp. Biocomput. 2006, 11:152-163.
-
(2006)
Pac. Symp. Biocomput.
, vol.11
, pp. 152-163
-
-
Kushida, T.1
Takagi, T.2
Fukuda, K.I.3
-
18
-
-
77349091815
-
NetPath: a public resource of curated signal transduction pathways
-
Kandasamy K., Mohan S.S., Raju R., Keerthikumar S., Kumar G.S., Venugopal A.K., Telikicherla D., Navarro J.D., Mathivanan S., Pecquet C., Gollapudi S.K., Tattikota S.G., Mohan S., Padhukasahasram H., Subbannayya Y., Goel R., Jacob H.K., Zhong J., Sekhar R., Nanjappa V., Balakrishnan L., Subbaiah R., Ramachandra Y.L., Rahiman B.A., Prasad T.S., Lin J.X., Houtman J.C., Desiderio S., Renauld J.C., Constantinescu S.N., Ohara O., Hirano T., Kubo M., Singh S., Khatri P., Draghici S., Bader G.D., Sander C., Leonard W.J., Pandey A. NetPath: a public resource of curated signal transduction pathways. Genome Biol. 2010, 11:R3.
-
(2010)
Genome Biol.
, vol.11
-
-
Kandasamy, K.1
Mohan, S.S.2
Raju, R.3
Keerthikumar, S.4
Kumar, G.S.5
Venugopal, A.K.6
Telikicherla, D.7
Navarro, J.D.8
Mathivanan, S.9
Pecquet, C.10
Gollapudi, S.K.11
Tattikota, S.G.12
Mohan, S.13
Padhukasahasram, H.14
Subbannayya, Y.15
Goel, R.16
Jacob, H.K.17
Zhong, J.18
Sekhar, R.19
Nanjappa, V.20
Balakrishnan, L.21
Subbaiah, R.22
Ramachandra, Y.L.23
Rahiman, B.A.24
Prasad, T.S.25
Lin, J.X.26
Houtman, J.C.27
Desiderio, S.28
Renauld, J.C.29
Constantinescu, S.N.30
Ohara, O.31
Hirano, T.32
Kubo, M.33
Singh, S.34
Khatri, P.35
Draghici, S.36
Bader, G.D.37
Sander, C.38
Leonard, W.J.39
Pandey, A.40
more..
-
19
-
-
58149186477
-
PID: the Pathway Interaction Database
-
Schaefer C.F., Anthony K., Krupa S., Buchoff J., Day M., Hannay T., Buetow K.H. PID: the Pathway Interaction Database. Nucleic Acids Res. 2009, 37:D674-D679.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
Hannay, T.6
Buetow, K.H.7
-
20
-
-
78651275182
-
Reactome: a database of reactions, pathways and biological processes
-
Croft D., O'Kelly G., Wu G., Haw R., Gillespie M., Matthews L., Caudy M., Garapati P., Gopinath G., Jassal B., Jupe S., Kalatskaya I., Mahajan S., May B., Ndegwa N., Schmidt E., Shamovsky V., Yung C., Birney E., Hermjakob H., D'Eustachio P., Stein L. Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res. 2011, 39:D691-D697.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
Jupe, S.11
Kalatskaya, I.12
Mahajan, S.13
May, B.14
Ndegwa, N.15
Schmidt, E.16
Shamovsky, V.17
Yung, C.18
Birney, E.19
Hermjakob, H.20
D'Eustachio, P.21
Stein, L.22
more..
-
21
-
-
75549091977
-
SMPDB: the Small Molecule Pathway Database
-
Frolkis A., Knox C., Lim E., Jewison T., Law V., Hau D.D., Liu P., Gautam B., Ly S., Guo A.C., Xia J., Liang Y., Shrivastava S., Wishart D.S. SMPDB: the Small Molecule Pathway Database. Nucleic Acids Res. 2010, 38:D480-D487.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Frolkis, A.1
Knox, C.2
Lim, E.3
Jewison, T.4
Law, V.5
Hau, D.D.6
Liu, P.7
Gautam, B.8
Ly, S.9
Guo, A.C.10
Xia, J.11
Liang, Y.12
Shrivastava, S.13
Wishart, D.S.14
-
22
-
-
48349105261
-
WikiPathways: pathway editing for the people
-
Pico A.R., Kelder T., van Iersel M.P., Hanspers K., Conklin B.R., Evelo C. WikiPathways: pathway editing for the people. PLoS Biol. 2008, 6:e184.
-
(2008)
PLoS Biol.
, vol.6
-
-
Pico, A.R.1
Kelder, T.2
van Iersel, M.P.3
Hanspers, K.4
Conklin, B.R.5
Evelo, C.6
-
23
-
-
33846115005
-
CancerGenes: a gene selection resource for cancer genome projects
-
Higgins M.E., Claremont M., Major J.E., Sander C., Lash A.E. CancerGenes: a gene selection resource for cancer genome projects. Nucleic Acids Res. 2007, 35:D721-D726.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Higgins, M.E.1
Claremont, M.2
Major, J.E.3
Sander, C.4
Lash, A.E.5
-
24
-
-
84954358609
-
The human phenotype ontology: a tool for annotating and analyzing human hereditary disease
-
Robinson P.N., Köhler S., Bauer S., Seelow D., Horn D., Mundlos S. The human phenotype ontology: a tool for annotating and analyzing human hereditary disease. Am. J. Hum. Genet. 2008, 83:610-615.
-
(2008)
Am. J. Hum. Genet.
, vol.83
, pp. 610-615
-
-
Robinson, P.N.1
Köhler, S.2
Bauer, S.3
Seelow, D.4
Horn, D.5
Mundlos, S.6
-
25
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M., Goto S., Furumichi M., Tanabe M., Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 2010, 38:D355-D360.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
26
-
-
39449095146
-
MethCancerDB - aberrant DNA methylation in human cancer
-
Lauss M., Visne I., Weinhaeusel A., Vierlinger K., Noehammer C., Kriegner A. MethCancerDB - aberrant DNA methylation in human cancer. Br. J. Cancer 2008, 98:816-817.
-
(2008)
Br. J. Cancer
, vol.98
, pp. 816-817
-
-
Lauss, M.1
Visne, I.2
Weinhaeusel, A.3
Vierlinger, K.4
Noehammer, C.5
Kriegner, A.6
-
27
-
-
38549129812
-
MethyCancer: the database of human DNA methylation and cancer
-
He X., Chang S., Zhang J., Zhao Q., Xiang H., Kusonmano K., Yang L., Sun Z.S., Yang H., Wang J. MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res. 2008, 36:D836-D841.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
He, X.1
Chang, S.2
Zhang, J.3
Zhao, Q.4
Xiang, H.5
Kusonmano, K.6
Yang, L.7
Sun, Z.S.8
Yang, H.9
Wang, J.10
-
28
-
-
78249235739
-
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
-
Smith C.L., Eppig J.T. The mammalian phenotype ontology: enabling robust annotation and comparative analysis. Wiley Interdiscip. Rev. Syst. Biol. Med. 2009, 1:390-399.
-
(2009)
Wiley Interdiscip. Rev. Syst. Biol. Med.
, vol.1
, pp. 390-399
-
-
Smith, C.L.1
Eppig, J.T.2
-
29
-
-
76149120425
-
A side effect resource to capture phenotypic effects of drugs
-
Kuhn M., Campillos M., Letunic I., Jensen L.J., Bork P. A side effect resource to capture phenotypic effects of drugs. Mol. Syst. Biol. 2010, 6:343.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 343
-
-
Kuhn, M.1
Campillos, M.2
Letunic, I.3
Jensen, L.J.4
Bork, P.5
-
30
-
-
78651317084
-
The comparative toxicogenomics database: update 2011
-
Davis A.P., King B.L., Mockus S., Murphy C.G., Saraceni-Richards C., Rosenstein M., Wiegers T., Mattingly C.J. The comparative toxicogenomics database: update 2011. Nucleic Acids Res. 2011, 39:D1067-D1072.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Davis, A.P.1
King, B.L.2
Mockus, S.3
Murphy, C.G.4
Saraceni-Richards, C.5
Rosenstein, M.6
Wiegers, T.7
Mattingly, C.J.8
-
31
-
-
78651287426
-
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs
-
Knox C., Law V., Jewison T., Liu P., Ly S., Frolkis A., Pon A., Banco K., Mak C., Neveu V., Djoumbou Y., Eisner R., Guo A.C., Wishart D.S. DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res. 2011, 39:D1035-D1041.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Knox, C.1
Law, V.2
Jewison, T.3
Liu, P.4
Ly, S.5
Frolkis, A.6
Pon, A.7
Banco, K.8
Mak, C.9
Neveu, V.10
Djoumbou, Y.11
Eisner, R.12
Guo, A.C.13
Wishart, D.S.14
-
32
-
-
38549182474
-
SuperTarget and Matador: resources for exploring drug-target relationships
-
Günther S., Kuhn M., Dunkel M., Campillos M., Senger C., Petsalaki E., Ahmed J., Urdiales E.G., Gewiess A., Jensen L.J., Schneider R., Skoblo R., Russell R.B., Bourne P.E., Bork P., Preissner R. SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res. 2008, 36:D919-D922.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Günther, S.1
Kuhn, M.2
Dunkel, M.3
Campillos, M.4
Senger, C.5
Petsalaki, E.6
Ahmed, J.7
Urdiales, E.G.8
Gewiess, A.9
Jensen, L.J.10
Schneider, R.11
Skoblo, R.12
Russell, R.B.13
Bourne, P.E.14
Bork, P.15
Preissner, R.16
-
33
-
-
75549087827
-
STITCH 2: an interaction network database for small molecules and proteins
-
Kuhn M., Szklarczyk D., Franceschini A., Campillos M., von Mering C., Jensen L.J., Beyer A., Bork P. STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res. 2010, 38:D552-D556.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kuhn, M.1
Szklarczyk, D.2
Franceschini, A.3
Campillos, M.4
von Mering, C.5
Jensen, L.J.6
Beyer, A.7
Bork, P.8
-
34
-
-
75549085747
-
T3DB: a comprehensively annotated database of common toxins and their targets
-
Lim E., Pon A., Djoumbou Y., Knox C., Shrivastava S., Guo A.C., Neveu V., Wishart D.S. T3DB: a comprehensively annotated database of common toxins and their targets. Nucleic Acids Res. 2010, 38:D781-D786.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Lim, E.1
Pon, A.2
Djoumbou, Y.3
Knox, C.4
Shrivastava, S.5
Guo, A.C.6
Neveu, V.7
Wishart, D.S.8
-
35
-
-
78651293534
-
MiRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A., Griffiths-Jones S. MiRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39:D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
36
-
-
78651266827
-
MiRTarBase: a database curates experimentally validated microRNA-target interactions
-
Hsu S.D., Lin F.M., Wu W.Y., Liang C., Huang W.C., Chan W.L., Tsai W.T., Chen G.Z., Lee C.J., Chiu C.M., Chien C.H., Wu M.C., Huang C.Y., Tsou A.P., Huang H.D. MiRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res. 2011, 39:D163-D169.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Hsu, S.D.1
Lin, F.M.2
Wu, W.Y.3
Liang, C.4
Huang, W.C.5
Chan, W.L.6
Tsai, W.T.7
Chen, G.Z.8
Lee, C.J.9
Chiu, C.M.10
Chien, C.H.11
Wu, M.C.12
Huang, C.Y.13
Tsou, A.P.14
Huang, H.D.15
-
37
-
-
77954364953
-
Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data
-
Essaghir A., Toffalini F., Knoops L., Kallin A., van Helden J., Demoulin J.B. Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data. Nucleic Acids Res. 2010, 38:e120.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Essaghir, A.1
Toffalini, F.2
Knoops, L.3
Kallin, A.4
van Helden, J.5
Demoulin, J.B.6
-
38
-
-
24044522270
-
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
-
Durinck S., Moreau Y., Kasprzyk A., Davis S., De Moor B., Brazma A., Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 2005, 21:3439-3440.
-
(2005)
Bioinformatics
, vol.21
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
Davis, S.4
De Moor, B.5
Brazma, A.6
Huber, W.7
-
39
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. Ser. B 1995, 57:289-300.
-
(1995)
J. Roy. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
40
-
-
30044451191
-
The Gene Set Builder: collation, curation, and distribution of sets of genes
-
Yusuf D., Lim J.S., Wasserman W.W. The Gene Set Builder: collation, curation, and distribution of sets of genes. BMC Bioinformatics 2005, 6:305.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 305
-
-
Yusuf, D.1
Lim, J.S.2
Wasserman, W.W.3
-
42
-
-
34648823219
-
Leukocyte gene expression signatures in antineutrophil cytoplasmic autoantibody and lupus glomerulonephritis
-
Alcorta D.A., Barnes D.A., Dooley M.A., Sullivan P., Jonas B., Liu Y., Lionaki S., Reddy C.B., Chin H., Dempsey A.A., Jennette J.C., Falk R.J. Leukocyte gene expression signatures in antineutrophil cytoplasmic autoantibody and lupus glomerulonephritis. Kidney Int. 2007, 72:853-864.
-
(2007)
Kidney Int.
, vol.72
, pp. 853-864
-
-
Alcorta, D.A.1
Barnes, D.A.2
Dooley, M.A.3
Sullivan, P.4
Jonas, B.5
Liu, Y.6
Lionaki, S.7
Reddy, C.B.8
Chin, H.9
Dempsey, A.A.10
Jennette, J.C.11
Falk, R.J.12
-
43
-
-
1342332137
-
Endothelial cells preparing to die by apoptosis initiate a program of transcriptome and glycome regulation
-
Johnson N.A., Sengupta S., Saidi S.A., Lessan K., Charnock-Jones S.D., Scott L., Stephens R., Freeman T.C., Tom B.D., Harris M., Denyer G., Sundaram M., Sasisekharan R., Smith S.K., Print C.G. Endothelial cells preparing to die by apoptosis initiate a program of transcriptome and glycome regulation. FASEB J. 2004, 18:188-190.
-
(2004)
FASEB J.
, vol.18
, pp. 188-190
-
-
Johnson, N.A.1
Sengupta, S.2
Saidi, S.A.3
Lessan, K.4
Charnock-Jones, S.D.5
Scott, L.6
Stephens, R.7
Freeman, T.C.8
Tom, B.D.9
Harris, M.10
Denyer, G.11
Sundaram, M.12
Sasisekharan, R.13
Smith, S.K.14
Print, C.G.15
-
44
-
-
0037097595
-
Apoptotic signaling induced by immunomodulatory thalidomide analogs in human multiple myeloma cells: therapeutic implications
-
4525-4530
-
Mitsiades N., Mitsiades C.S., Poulaki V., Chauhan D., Richardson P.G., Hideshima T., Munshi N.C., Treon S.P., Anderson K.C. Apoptotic signaling induced by immunomodulatory thalidomide analogs in human multiple myeloma cells: therapeutic implications. Blood 2002, 99. 4525-4530.
-
(2002)
Blood
, vol.99
-
-
Mitsiades, N.1
Mitsiades, C.S.2
Poulaki, V.3
Chauhan, D.4
Richardson, P.G.5
Hideshima, T.6
Munshi, N.C.7
Treon, S.P.8
Anderson, K.C.9
-
45
-
-
46049114504
-
The effects of vinblastine on endothelial cells
-
Gallagher H., Carroll W.M., Dowd M., Rochev Y. The effects of vinblastine on endothelial cells. Endothelium 2008, 15:9-15.
-
(2008)
Endothelium
, vol.15
, pp. 9-15
-
-
Gallagher, H.1
Carroll, W.M.2
Dowd, M.3
Rochev, Y.4
-
46
-
-
20844438186
-
Bioinformatic analysis of primary endothelial cell gene array data illustrated by the analysis of transcriptome changes in endothelial cells exposed to VEGF-A and PlGF
-
Schoenfeld J., Lessan K., Johnson N.A., Charnock-Jones D.S., Evans A., Vourvouhaki E., Scott L., Stephens R., Freeman T.C., Saidi S.A., Tom B., Weston G.C., Rogers P., Smith S.K., Print C.G. Bioinformatic analysis of primary endothelial cell gene array data illustrated by the analysis of transcriptome changes in endothelial cells exposed to VEGF-A and PlGF. Angiogenesis 2004, 7:143-156.
-
(2004)
Angiogenesis
, vol.7
, pp. 143-156
-
-
Schoenfeld, J.1
Lessan, K.2
Johnson, N.A.3
Charnock-Jones, D.S.4
Evans, A.5
Vourvouhaki, E.6
Scott, L.7
Stephens, R.8
Freeman, T.C.9
Saidi, S.A.10
Tom, B.11
Weston, G.C.12
Rogers, P.13
Smith, S.K.14
Print, C.G.15
-
47
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A., Tamayo P., Mootha V.K., Mukherjee S., Ebert B.L., Gillette M.A., Paulovich A., Pomeroy S.L., Golub T.R., Lander E.S., Mesirov J.P. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 2005, 102:15545-15550.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
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