-
1
-
-
52049098967
-
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
-
Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ (2008) A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 31: 785-799
-
(2008)
Mol Cell
, vol.31
, pp. 785-799
-
-
Aravin, A.A.1
Sachidanandam, R.2
Bourc'his, D.3
Schaefer, C.4
Pezic, D.5
Toth, K.F.6
Bestor, T.7
Hannon, G.J.8
-
2
-
-
0031818471
-
Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe
-
DOI 10.1002/(SICI)1097-0061(199807)14:10<943::AID-YEA292>3.0.CO;2-Y
-
Bahler J, Wu JQ, Longtine MS, Shah NG, McKenzie 3rd A, Steever AB, Wach A, Philippsen P, Pringle JR (1998) Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951 (Pubitemid 28328000)
-
(1998)
Yeast
, vol.14
, Issue.10
, pp. 943-951
-
-
Bahler, J.1
Wu, J.-Q.2
Longtine, M.S.3
Shah, N.G.4
McKenzie III, A.5
Steever, A.B.6
Wach, A.7
Philippsen, P.8
Pringle, J.R.9
-
3
-
-
77649105301
-
Stc1: A critical link between RNAi and chromatin modification required for heterochromatin integrity
-
Bayne EH, White SA, Kagansky A, Bijos DA, Sanchez-Pulido L, Hoe KL, Kim DU, Park HO, Ponting CP, Rappsilber J, Allshire RC (2010) Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity. Cell 140: 666-677
-
(2010)
Cell
, vol.140
, pp. 666-677
-
-
Bayne, E.H.1
White, S.A.2
Kagansky, A.3
Bijos, D.A.4
Sanchez-Pulido, L.5
Hoe, K.L.6
Kim, D.U.7
Park, H.O.8
Ponting, C.P.9
Rappsilber, J.10
Allshire, R.C.11
-
4
-
-
84862833611
-
Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in Spombe
-
Bitton DA, Grallert A, Scutt PJ, Yates T, Li Y, Bradford JR, Hey Y, Pepper SD, Hagan IM, Miller CJ (2011) Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe. Mol Syst Biol 7: 559
-
(2011)
Mol Syst Biol
, vol.7
, pp. 559
-
-
Bitton, D.A.1
Grallert, A.2
Scutt, P.J.3
Yates, T.4
Li, Y.5
Bradford, J.R.6
Hey, Y.7
Pepper, S.D.8
Hagan, I.M.9
Miller, C.J.10
-
5
-
-
78049354472
-
A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
-
Bourc'his D, Voinnet O (2010) A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 330(6004): 617-622
-
(2010)
Science
, vol.330
, Issue.6004
, pp. 617-622
-
-
Bourc'his, D.1
Voinnet, O.2
-
6
-
-
35848962284
-
Transcription and RNAi in heterochromatic gene silencing
-
DOI 10.1038/nsmb1315, PII NSMB1315
-
Buhler M, Moazed D (2007) Transcription and RNAi in heterochromatic gene silencing. Nat Struct Mol Biol 14: 1041-1048 (Pubitemid 350060336)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.11
, pp. 1041-1048
-
-
Buhler, M.1
Moazed, D.2
-
7
-
-
80052328708
-
A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation
-
Burkhart KB, Guang S, Buckley BA, Wong L, Bochner AF, Kennedy S (2011) A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation. PLoS Genet 7: e1002249
-
(2011)
PLoS Genet
, vol.7
-
-
Burkhart, K.B.1
Guang, S.2
Buckley, B.A.3
Wong, L.4
Bochner, A.F.5
Kennedy, S.6
-
8
-
-
23044498502
-
Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome
-
DOI 10.1038/ng1602
-
Cam HP, Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SI (2005) Comprehensive analysis of heterochromatin- and RNAimediated epigenetic control of the fission yeast genome. Nat Genet 37: 809-819 (Pubitemid 41077106)
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 809-819
-
-
Cam, H.P.1
Sugiyama, T.2
Chen, E.S.3
Chen, X.4
FitzGerald, P.C.5
Grewal, S.I.S.6
-
9
-
-
1442305898
-
RNA Silencing Genes Control de Novo DNA Methylation
-
DOI 10.1126/science.1095989
-
Chan SW, Zilberman D, Xie Z, Johansen LK, Carrington JC, Jacobsen SE (2004) RNA silencing genes control de novo DNA methylation. Science 303: 1336 (Pubitemid 38269419)
-
(2004)
Science
, vol.303
, Issue.5662
, pp. 1336
-
-
Chan, S.W.-L.1
Zilberman, D.2
Xie, Z.3
Johansen, L.K.4
Carrington, J.C.5
Jacobsen, S.E.6
-
10
-
-
37349038984
-
Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
-
DOI 10.1016/j.cell.2007.10.056, PII S0092867407014766
-
Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA (2007) Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 131: 1340-1353 (Pubitemid 350297418)
-
(2007)
Cell
, vol.131
, Issue.7
, pp. 1340-1353
-
-
Chekanova, J.A.1
Gregory, B.D.2
Reverdatto, S.V.3
Chen, H.4
Kumar, R.5
Hooker, T.6
Yazaki, J.7
Li, P.8
Skiba, N.9
Peng, Q.10
Alonso, J.11
Brukhin, V.12
Grossniklaus, U.13
Ecker, J.R.14
Belostotsky, D.A.15
-
11
-
-
80055028381
-
The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover
-
Chen HM, Futcher B, Leatherwood J (2011) The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover. PLoS ONE 6: e26804
-
(2011)
PLoS ONE
, vol.6
-
-
Chen, H.M.1
Futcher, B.2
Leatherwood, J.3
-
12
-
-
84855417071
-
Repression of meiotic genes by antisense transcription and by Fkh2 transcription factor in Schizosaccharomyces pombe
-
Chen HM, Rosebrock AP, Khan SR, Futcher B, Leatherwood JK (2012) Repression of meiotic genes by antisense transcription and by Fkh2 transcription factor in Schizosaccharomyces pombe. PLoS ONE 7: e29917
-
(2012)
PLoS ONE
, vol.7
-
-
Chen, H.M.1
Rosebrock, A.P.2
Khan, S.R.3
Futcher, B.4
Leatherwood, J.K.5
-
13
-
-
70349459257
-
The Argonaute CSR-1 and its 22GRNA cofactors are required for holocentric chromosome segregation
-
Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte Jr. D, Mello CC (2009) The Argonaute CSR-1 and its 22GRNA cofactors are required for holocentric chromosome segregation. Cell 139: 123-134
-
(2009)
Cell
, vol.139
, pp. 123-134
-
-
Claycomb, J.M.1
Batista, P.J.2
Pang, K.M.3
Gu, W.4
Vasale, J.J.5
Van Wolfswinkel, J.C.6
Chaves, D.A.7
Shirayama, M.8
Mitani, S.9
Ketting, R.F.10
Conte Jr., D.11
Mello, C.C.12
-
14
-
-
78651102330
-
A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
-
Cremona N, Potter K, Wise JA (2011) A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts. Mol Biol Cell 22: 66-77
-
(2011)
Mol Biol Cell
, vol.22
, pp. 66-77
-
-
Cremona, N.1
Potter, K.2
Wise, J.A.3
-
15
-
-
25844480848
-
RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing
-
DOI 10.1101/gad.344205
-
Djupedal I, Portoso M, Spahr H, Bonilla C, Gustafsson CM, Allshire RC, Ekwall K (2005) RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing. Genes Dev 19: 2301-2306 (Pubitemid 41396907)
-
(2005)
Genes and Development
, vol.19
, Issue.19
, pp. 2301-2306
-
-
Djupedal, I.1
Portoso, M.2
Spahr, H.3
Bonilla, C.4
Gustafsson, C.M.5
Allshire, R.C.6
Ekwall, K.7
-
16
-
-
75849124607
-
The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila
-
Fagegaltier D, Bouge AL, Berry B, Poisot E, Sismeiro O, Coppee JY, Theodore L, Voinnet O, Antoniewski C (2009) The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila. Proc Natl Acad Sci U S A 106: 21258-21263
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 21258-21263
-
-
Fagegaltier, D.1
Bouge, A.L.2
Berry, B.3
Poisot, E.4
Sismeiro, O.5
Coppee, J.Y.6
Theodore, L.7
Voinnet, O.8
Antoniewski, C.9
-
17
-
-
77955502831
-
The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation
-
Gerace EL, Halic M, Moazed D (2010) The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation. Mol Cell 39: 360-372
-
(2010)
Mol Cell
, vol.39
, pp. 360-372
-
-
Gerace, E.L.1
Halic, M.2
Moazed, D.3
-
18
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal M, Zamore PD (2009) Small silencing RNAs: an expanding universe. Nat Rev Genet 10: 94-108
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
19
-
-
80053976182
-
HuR-dependent loading of miRNA RISC to the mRNA encoding the Ras-related small GTPase RhoB controls its translation during UV-induced apoptosis
-
Glorian V, Maillot G, Poles S, Iacovoni JS, Favre G, Vagner S (2011) HuR-dependent loading of miRNA RISC to the mRNA encoding the Ras-related small GTPase RhoB controls its translation during UV-induced apoptosis. Cell Death Differ 18: 1692-1701
-
(2011)
Cell Death Differ
, vol.18
, pp. 1692-1701
-
-
Glorian, V.1
Maillot, G.2
Poles, S.3
Iacovoni, J.S.4
Favre, G.5
Vagner, S.6
-
20
-
-
33845755946
-
Heterochromatin revisited
-
DOI 10.1038/nrg2008, PII NRG2008
-
Grewal SI, Jia S (2007) Heterochromatin revisited. Nat Rev Genet 8: 35-46 (Pubitemid 46006048)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.1
, pp. 35-46
-
-
Grewal, S.I.S.1
Jia, S.2
-
21
-
-
40749094018
-
Cohesin Complex Promotes Transcriptional Termination between Convergent Genes in S. pombe
-
DOI 10.1016/j.cell.2008.02.040, PII S0092867408003292
-
Gullerova M, Proudfoot NJ (2008) Cohesin complex promotes transcriptional termination between convergent genes in S. pombe. Cell 132: 983-995 (Pubitemid 351381746)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 983-995
-
-
Gullerova, M.1
Proudfoot, N.J.2
-
23
-
-
33746005932
-
Selective elimination of messenger RNA prevents an incidence of untimely meiosis
-
DOI 10.1038/nature04881, PII NATURE04881
-
Harigaya Y, Tanaka H, Yamanaka S, Tanaka K, Watanabe Y, Tsutsumi C, Chikashige Y, Hiraoka Y, Yamashita A, Yamamoto M (2006) Selective elimination of messenger RNA prevents an incidence of untimely meiosis. Nature 442: 45-50 (Pubitemid 44064204)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 45-50
-
-
Harigaya, Y.1
Tanaka, H.2
Yamanaka, S.3
Tanaka, K.4
Watanabe, Y.5
Tsutsumi, C.6
Chikashige, Y.7
Hiraoka, Y.8
Yamashita, A.9
Yamamoto, M.10
-
24
-
-
65249093731
-
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNAbinding protein
-
He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK (2009) An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNAbinding protein. Cell 137: 498-508
-
(2009)
Cell
, vol.137
, pp. 498-508
-
-
He, X.J.1
Hsu, Y.F.2
Zhu, S.3
Wierzbicki, A.T.4
Pontes, O.5
Pikaard, C.S.6
Liu, H.L.7
Wang, C.S.8
Jin, H.9
Zhu, J.K.10
-
25
-
-
0031954630
-
+ gene encodes a meiosis-specific transcription factor containing a forkhead DNA-binding domain
-
Horie S, Watanabe Y, Tanaka K, Nishiwaki S, Fujioka H, Abe H, Yamamoto M, Shimoda C (1998) The Schizosaccharomyces pombe mei4 gene encodes a meiosis-specific transcription factor containing a forkhead DNA-binding domain. Mol Cell Biol 18: 2118-2129 (Pubitemid 28152661)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.4
, pp. 2118-2129
-
-
Horie, S.1
Watanabe, Y.2
Tanaka, K.3
Nishiwaki, S.4
Fujioka, H.5
Abe, H.6
Yamamoto, M.7
Shimoda, C.8
-
26
-
-
22344434734
-
Molecular Biology: RNA polymerase II is required for RNAi-dependent heterochromatin assembly
-
DOI 10.1126/science.1114955
-
Kato H, Goto DB, Martienssen RA, Urano T, Furukawa K, Murakami Y (2005) RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science 309: 467-469 (Pubitemid 40994685)
-
(2005)
Science
, vol.309
, Issue.5733
, pp. 467-469
-
-
Kato, H.1
Goto, D.B.2
Martienssen, R.A.3
Urano, T.4
Furukawa, K.5
Murakami, Y.6
-
27
-
-
79751485564
-
The many faces of RNAi
-
Ketting RF (2011) The many faces of RNAi. Dev Cell 20: 148-161
-
(2011)
Dev Cell
, vol.20
, pp. 148-161
-
-
Ketting, R.F.1
-
28
-
-
68149165414
-
HuR recruits let-7/RISC to repress c-Myc expression
-
Kim HH, Kuwano Y, Srikantan S, Lee EK, Martindale JL, Gorospe M (2009) HuR recruits let-7/RISC to repress c-Myc expression. Genes Dev 23: 1743-1748
-
(2009)
Genes Dev
, vol.23
, pp. 1743-1748
-
-
Kim, H.H.1
Kuwano, Y.2
Srikantan, S.3
Lee, E.K.4
Martindale, J.L.5
Gorospe, M.6
-
29
-
-
34548784928
-
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
-
DOI 10.1093/nar/gkm576
-
Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, Tuschl T, Gvozdev VA (2007) Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res 35: 5430-5438 (Pubitemid 47423917)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.16
, pp. 5430-5438
-
-
Klenov, M.S.1
Lavrov, S.A.2
Stolyarenko, A.D.3
Ryazansky, S.S.4
Aravin, A.A.5
Tuschl, T.6
Gvozdev, V.A.7
-
30
-
-
33645106895
-
Multiplexing RT-PCR for the detection of multiple miRNA species in small samples
-
Lao K, Xu NL, Yeung V, Chen C, Livak KJ, Straus NA (2006) Multiplexing RT-PCR for the detection of multiple miRNA species in small samples. Biochem Biophys Res Commun 343: 85-89
-
(2006)
Biochem Biophys Res Commun
, vol.343
, pp. 85-89
-
-
Lao, K.1
Xu, N.L.2
Yeung, V.3
Chen, C.4
Livak, K.J.5
Straus, N.A.6
-
31
-
-
77954381767
-
Small RNAs in the animal gonad: Guarding genomes and guiding development
-
Lau NC (2010) Small RNAs in the animal gonad: guarding genomes and guiding development. Int J Biochem Cell Biol 42: 1334-1347
-
(2010)
Int J Biochem Cell Biol
, vol.42
, pp. 1334-1347
-
-
Lau, N.C.1
-
32
-
-
79957844677
-
Common ground: Small RNA programming and chromatin modifications
-
Lejeune E, Allshire RC (2011) Common ground: small RNA programming and chromatin modifications. Curr Opin Cell Biol 23: 258-265
-
(2011)
Curr Opin Cell Biol
, vol.23
, pp. 258-265
-
-
Lejeune, E.1
Allshire, R.C.2
-
33
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone CD, Hannon GJ (2009) Small RNAs as guardians of the genome. Cell 136: 656-668
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
34
-
-
0036729529
-
The transcriptional program of meiosis and sporulation in fission yeast
-
DOI 10.1038/ng951
-
Mata J, Lyne R, Burns G, Bahler J (2002) The transcriptional program of meiosis and sporulation in fission yeast. Nat Genet 32: 143-147 (Pubitemid 34977209)
-
(2002)
Nature Genetics
, vol.32
, Issue.1
, pp. 143-147
-
-
Mata, J.1
Lyne, R.2
Burns, G.3
Bahler, J.4
-
35
-
-
39049127908
-
Transcriptional regulatory network for sexual differentiation in fission yeast
-
Mata J, Wilbrey A, Bahler J (2007) Transcriptional regulatory network for sexual differentiation in fission yeast. Genome Biol 8: R217
-
(2007)
Genome Biol
, vol.8
-
-
Mata, J.1
Wilbrey, A.2
Bahler, J.3
-
36
-
-
65249148019
-
RNAmediated chromatin-based silencing in plants
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ (2009) RNAmediated chromatin-based silencing in plants. Curr Opin Cell Biol 21: 367-376
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
37
-
-
0037145031
-
Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena
-
DOI 10.1016/S0092-8674(02)00909-1
-
Mochizuki K, Fine NA, Fujisawa T, Gorovsky MA (2002) Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena. Cell 110: 689-699 (Pubitemid 35283959)
-
(2002)
Cell
, vol.110
, Issue.6
, pp. 689-699
-
-
Mochizuki, K.1
Fine, N.A.2
Fujisawa, T.3
Gorovsky, M.A.4
-
38
-
-
0026025891
-
Molecular genetic analysis of fission yeast Schizosaccharomyces pombe
-
Moreno S, Klar A, Nurse P (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194: 795-823
-
(1991)
Methods Enzymol
, vol.194
, pp. 795-823
-
-
Moreno, S.1
Klar, A.2
Nurse, P.3
-
39
-
-
10944248935
-
Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs
-
DOI 10.1016/j.cell.2004.11.034, PII S009286740401102X
-
Motamedi MR, Verdel A, Colmenares SU, Gerber SA, Gygi SP, Moazed D (2004) Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell 119: 789-802 (Pubitemid 40017686)
-
(2004)
Cell
, vol.119
, Issue.6
, pp. 789-802
-
-
Motamedi, M.R.1
Verdel, A.2
Colmenares, S.U.3
Gerber, S.A.4
Gygi, S.P.5
Moazed, D.6
-
40
-
-
72449182150
-
Ectopic overproduction of a sporulation-specific transcription factor induces assembly of prespore-like membranous compartments in vegetative cells of fission yeast
-
Nakase Y, Hirata A, Shimoda C, Nakamura T (2009) Ectopic overproduction of a sporulation-specific transcription factor induces assembly of prespore-like membranous compartments in vegetative cells of fission yeast. Genetics 183: 1195-1199
-
(2009)
Genetics
, vol.183
, pp. 1195-1199
-
-
Nakase, Y.1
Hirata, A.2
Shimoda, C.3
Nakamura, T.4
-
41
-
-
0035815360
-
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
-
DOI 10.1126/science.1060118
-
Nakayama J, Rice JC, Strahl BD, Allis CD, Grewal SI (2001) Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292: 110-113 (Pubitemid 32289138)
-
(2001)
Science
, vol.292
, Issue.5514
, pp. 110-113
-
-
Nakayama, J.1
Rice, J.C.2
Strahl, B.D.3
Allis, C.D.4
Grewal, S.I.S.5
-
42
-
-
10644221797
-
RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing
-
DOI 10.1038/ng1452
-
Noma K, Sugiyama T, Cam H, Verdel A, Zofall M, Jia S, Moazed D, Grewal SI (2004) RITS acts in cis to promote RNA interferencemediated transcriptional and post-transcriptional silencing. Nat Genet 36: 1174-1180 (Pubitemid 41288966)
-
(2004)
Nature Genetics
, vol.36
, Issue.11
, pp. 1174-1180
-
-
Noma, K.-I.1
Sugiyama, T.2
Cam, H.3
Verdel, A.4
Zofall, M.5
Jia, S.6
Moazed, D.7
Grewal, S.I.S.8
-
43
-
-
34547555385
-
Melina II: A web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions
-
Okumura T, Makiguchi H, Makita Y, Yamashita R, Nakai K (2007) Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions. Nucleic Acids Res 35((Web Server issue)): W227-W231
-
(2007)
Nucleic Acids Res
, vol.35 WEB SERVER ISSUE
-
-
Okumura, T.1
Makiguchi, H.2
Makita, Y.3
Yamashita, R.4
Nakai, K.5
-
44
-
-
0942279615
-
Heterochromatic Silencing and HP1 Localization in Drosophila Are Dependent on the RNAi Machinery
-
DOI 10.1126/science.1092653
-
Pal-Bhadra M, Leibovitch BA, Gandhi SG, Rao M, Bhadra U, Birchler JA, Elgin SC (2004) Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303: 669-672 (Pubitemid 38141632)
-
(2004)
Science
, vol.303
, Issue.5658
, pp. 669-672
-
-
Pal-Bhadra, M.1
Leibovitch, B.A.2
Gandhi, S.G.3
Rao, M.4
Bhadra, U.5
Birchler, J.A.6
Elgin, S.C.R.7
-
45
-
-
34248574597
-
Functional Separation of the Requirements for Establishment and Maintenance of Centromeric Heterochromatin
-
DOI 10.1016/j.molcel.2007.05.004, PII S1097276507002845
-
Partridge JF, DeBeauchamp JL, Kosinski AM, Ulrich DL, Hadler MJ, Noffsinger VJ (2007) Functional separation of the requirements for establishment and maintenance of centromeric heterochromatin. Mol Cell 26: 593-602 (Pubitemid 46765188)
-
(2007)
Molecular Cell
, vol.26
, Issue.4
, pp. 593-602
-
-
Partridge, J.F.1
DeBeauchamp, J.L.2
Kosinski, A.M.3
Ulrich, D.L.4
Hadler, M.J.5
Noffsinger, V.J.P.6
-
46
-
-
0036792914
-
Cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site
-
DOI 10.1016/S0960-9822(02)01177-6, PII S0960982202011776
-
Partridge JF, Scott KS, Bannister AJ, Kouzarides T, Allshire RC (2002) cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site. Curr Biol 12: 1652-1660 (Pubitemid 35161918)
-
(2002)
Current Biology
, vol.12
, Issue.19
, pp. 1652-1660
-
-
Partridge, J.F.1
Scott, K.S.C.2
Bannister, A.J.3
Kouzarides, T.4
Allshire, R.C.5
-
47
-
-
78751474118
-
Non-coding RNAs as regulators of embryogenesis
-
Pauli A, Rinn JL, Schier AF (2011) Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet 12: 136-149
-
(2011)
Nat Rev Genet
, vol.12
, pp. 136-149
-
-
Pauli, A.1
Rinn, J.L.2
Schier, A.F.3
-
48
-
-
0037072660
-
Small RNAs correspond to centromere heterochromatic repeats
-
DOI 10.1126/science.1077183
-
Reinhart BJ, Bartel DP (2002) Small RNAs correspond to centromere heterochromatic repeats. Science 297: 1831 (Pubitemid 35024335)
-
(2002)
Science
, vol.297
, Issue.5588
, pp. 1831
-
-
Reinhart, B.J.1
Bartel, D.P.2
-
49
-
-
79959838293
-
Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing
-
Rowley MJ, Avrutsky MI, Sifuentes CJ, Pereira L, Wierzbicki AT (2011) Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing. PLoS Genet 7: e1002120
-
(2011)
PLoS Genet
, vol.7
-
-
Rowley, M.J.1
Avrutsky, M.I.2
Sifuentes, C.J.3
Pereira, L.4
Wierzbicki, A.T.5
-
50
-
-
77956048941
-
Molecular genetics of Schizosaccharomyces pombe
-
Sabatinos SA, Forsburg SL (2010) Molecular genetics of Schizosaccharomyces pombe. Methods Enzymol 470: 759-795
-
(2010)
Methods Enzymol
, vol.470
, pp. 759-795
-
-
Sabatinos, S.A.1
Forsburg, S.L.2
-
51
-
-
79951760007
-
Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales
-
Smith MJ, Pascal CE, Grauvogel Z, Habicht C, Seeb JE, Seeb LW (2011) Multiplex preamplification PCR and microsatellite validation enables accurate single nucleotide polymorphism genotyping of historical fish scales. Mol Ecol Resour 11(Suppl 1): 268-277
-
(2011)
Mol Ecol Resour
, vol.11
, Issue.SUPPL. 1
, pp. 268-277
-
-
Smith, M.J.1
Pascal, C.E.2
Grauvogel, Z.3
Habicht, C.4
Seeb, J.E.5
Seeb, L.W.6
-
52
-
-
77956248052
-
Negative regulation of meiotic gene expression by the nuclear poly (a)-binding protein in fission yeast
-
St-Andre O, Lemieux C, Perreault A, Lackner DH, Bahler J, Bachand F (2010) Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast. J Biol Chem 285: 27859-27868
-
(2010)
J Biol Chem
, vol.285
, pp. 27859-27868
-
-
St-Andre, O.1
Lemieux, C.2
Perreault, A.3
Lackner, D.H.4
Bahler, J.5
Bachand, F.6
-
53
-
-
0036805371
-
YTH: A new domain in nuclear proteins
-
DOI 10.1016/S0968-0004(02)02189-8, PII S0968000402021898
-
Stoilov P, Rafalska I, Stamm S (2002) YTH: a new domain in nuclear proteins. Trends Biochem Sci 27: 495-497 (Pubitemid 35279588)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.10
, pp. 495-497
-
-
Stoilov, P.1
Rafalska, I.2
Stamm, S.3
-
54
-
-
79952752659
-
Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast
-
Sugiyama T, Sugioka-Sugiyama R (2011) Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast. Embo J 30: 1027-1039
-
(2011)
Embo J
, vol.30
, pp. 1027-1039
-
-
Sugiyama, T.1
Sugioka-Sugiyama, R.2
-
55
-
-
79955411900
-
Small RNAs in early mammalian development: From gametes to gastrulation
-
Suh N, Blelloch R (2011) Small RNAs in early mammalian development: from gametes to gastrulation. Development 138: 1653-1661
-
(2011)
Development
, vol.138
, pp. 1653-1661
-
-
Suh, N.1
Blelloch, R.2
-
56
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
DOI 10.1006/jmbi.1998.1947
-
van Helden J, Andre B, Collado-Vides J (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Mol Biol 281: 827-842 (Pubitemid 28408432)
-
(1998)
Journal of Molecular Biology
, vol.281
, Issue.5
, pp. 827-842
-
-
Van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
57
-
-
70349442298
-
CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs
-
van Wolfswinkel JC, Claycomb JM, Batista PJ, Mello CC, Berezikov E, Ketting RF (2009) CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs. Cell 139: 135-148
-
(2009)
Cell
, vol.139
, pp. 135-148
-
-
Van Wolfswinkel, J.C.1
Claycomb, J.M.2
Batista, P.J.3
Mello, C.C.4
Berezikov, E.5
Ketting, R.F.6
-
58
-
-
0942279635
-
RNAi-Mediated Targeting of Heterochromatin by the RITS Complex
-
DOI 10.1126/science.1093686
-
Verdel A, Jia S, Gerber S, Sugiyama T, Gygi S, Grewal SI, Moazed D (2004) RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303: 672-676 (Pubitemid 38141633)
-
(2004)
Science
, vol.303
, Issue.5658
, pp. 672-676
-
-
Verdel, A.1
Jia, S.2
Gerber, S.3
Sugiyama, T.4
Gygi, S.5
Grewal, S.I.S.6
Moazed, D.7
-
59
-
-
26944502707
-
RNAi-directed assembly of heterochromatin in fission yeast
-
DOI 10.1016/j.febslet.2005.08.083, PII S0014579305011130, RNAi: Mechanisms, Biology and Applications
-
Verdel A, Moazed D (2005) RNAi-directed assembly of heterochromatin in fission yeast. FEBS Lett 579: 5872-5878 (Pubitemid 41484132)
-
(2005)
FEBS Letters
, vol.579
, Issue.26
, pp. 5872-5878
-
-
Verdel, A.1
Moazed, D.2
-
61
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
-
DOI 10.1126/science.1074973
-
Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837 (Pubitemid 35024336)
-
(2002)
Science
, vol.297
, Issue.5588
, pp. 1833-1837
-
-
Volpe, T.A.1
Kidner, C.2
Hall, I.M.3
Teng, G.4
Grewal, S.I.S.5
Martienssen, R.A.6
-
62
-
-
78650966598
-
Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe
-
Woolcock KJ, Gaidatzis D, Punga T, Buhler M (2011) Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe. Nat Struct Mol Biol 18: 94-99
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 94-99
-
-
Woolcock, K.J.1
Gaidatzis, D.2
Punga, T.3
Buhler, M.4
-
63
-
-
77954959806
-
Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S pombe cells
-
Yamanaka S, Yamashita A, Harigaya Y, Iwata R, Yamamoto M (2010) Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells. Embo J 29: 2173-2181
-
(2010)
Embo J
, vol.29
, pp. 2173-2181
-
-
Yamanaka, S.1
Yamashita, A.2
Harigaya, Y.3
Iwata, R.4
Yamamoto, M.5
-
64
-
-
84860794279
-
Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes
-
Yamashita A, Shichino Y, Tanaka H, Hiriart E, Touat-Todeschini L, Vavasseur A, Ding DQ, Hiraoka Y, Verdel A, Yamamoto M (2012) Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes. Open Biology 2: 120014
-
(2012)
Open Biology
, vol.2
, pp. 120014
-
-
Yamashita, A.1
Shichino, Y.2
Tanaka, H.3
Hiriart, E.4
Touat-Todeschini, L.5
Vavasseur, A.6
Ding, D.Q.7
Hiraoka, Y.8
Verdel, A.9
Yamamoto, M.10
-
65
-
-
0032476011
-
RNA-assisted nuclear transport of the meiotic regulator Mei2p in fission yeast
-
DOI 10.1016/S0092-8674(00)81787-0
-
Yamashita A, Watanabe Y, Nukina N, Yamamoto M (1998) RNAassisted nuclear transport of the meiotic regulator Mei2p in fission yeast. Cell 95: 115-123 (Pubitemid 28458029)
-
(1998)
Cell
, vol.95
, Issue.1
, pp. 115-123
-
-
Yamashita, A.1
Watanabe, Y.2
Nukina, N.3
Yamamoto, M.4
-
66
-
-
41649092299
-
Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin
-
DOI 10.1038/nsmb.1406, PII NSMB1406
-
Zhang K, Mosch K, Fischle W, Grewal SI (2008) Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin. Nat Struct Mol Biol 15: 381-388 (Pubitemid 351483395)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.4
, pp. 381-388
-
-
Zhang, K.1
Mosch, K.2
Fischle, W.3
Grewal, S.I.S.4
-
67
-
-
77952002827
-
The YTH domain is a novel RNA binding domain
-
Zhang Z, Theler D, Kaminska KH, Hiller M, de la Grange P, Pudimat R, Rafalska I, Heinrich B, Bujnicki JM, Allain FH, Stamm S (2010) The YTH domain is a novel RNA binding domain. J Biol Chem 285: 14701-14710
-
(2010)
J Biol Chem
, vol.285
, pp. 14701-14710
-
-
Zhang, Z.1
Theler, D.2
Kaminska, K.H.3
Hiller, M.4
De La Grange, P.5
Pudimat, R.6
Rafalska, I.7
Heinrich, B.8
Bujnicki, J.M.9
Allain, F.H.10
Stamm, S.11
-
68
-
-
84855476158
-
RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation
-
Zofall M, Yamanaka S, Reyes-Turcu FE, Zhang K, Rubin C, Grewal SI (2012) RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation. Science 335: 96-100
-
(2012)
Science
, vol.335
, pp. 96-100
-
-
Zofall, M.1
Yamanaka, S.2
Reyes-Turcu, F.E.3
Zhang, K.4
Rubin, C.5
Grewal, S.I.6
|