Identifying differentiation stage of individual primary hematopoietic cells from mouse bone marrow by multivariate analysis of TOF-secondary ion mass spectrometry data

Analytical Chemistry

Volumn 84, Issue 10, 2012, Pages 4307-4313

  Frisz, Jessica F ^a   Choi, Ji Sun ^a   Wilson, Robert L ^a   Harley, Brendan A C ^a   Kraft, Mary L ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

B CELLS; BONE MARROW; CELL DIFFERENTIATION; CLINICAL TREATMENTS; CULTURE SYSTEMS; EXPERIMENTAL APPROACHES; HEMATOPOIETIC CELL; HEMATOPOIETIC STEM CELLS; IMMUNE CELLS; ION MASS SPECTROMETRY; LATERAL VARIATIONS; MASS SPECTROMETRY DATA; MOLECULAR CHANGES; MULTI VARIATE ANALYSIS; PARTIAL LEAST SQUARES; PROGENITOR CELL; SINGLE-CELL LEVEL; SPECTRAL VARIATION; STEM CELL DIFFERENTIATION; TEST SETS; TIME OF FLIGHT SECONDARY ION MASS SPECTROMETRY; TISSUE ENGINEERING APPLICATIONS;

BIOLOGICAL MATERIALS; BIOMATERIALS; BIOMECHANICS; BONE; CALIBRATION; CELL CULTURE; DISCRIMINANT ANALYSIS; MAMMALS; MECHANICAL PROPERTIES; MULTIVARIANT ANALYSIS; SECONDARY ION MASS SPECTROMETRY; TISSUE ENGINEERING;

STEM CELLS;

ANIMAL; ARTICLE; BONE MARROW CELL; C57BL MOUSE; CELL DIFFERENTIATION; CYTOLOGY; DISCRIMINANT ANALYSIS; FEMALE; HEMATOPOIETIC STEM CELL; MASS SPECTROMETRY; MOUSE; REGRESSION ANALYSIS;

ANIMALS; BONE MARROW CELLS; CELL DIFFERENTIATION; DISCRIMINANT ANALYSIS; FEMALE; HEMATOPOIETIC STEM CELLS; LEAST-SQUARES ANALYSIS; MICE; MICE, INBRED C57BL; SPECTROMETRY, MASS, SECONDARY ION;

EID: 84861157349     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac203329j     Document Type: Article

References (53)

1. Weissman, I. L. Cell 2000, 100, 157-168
2. Wilson, A.; Trumpp, A. Nature Rev. Immunol. 2006, 6, 93-106
3. Yin, T.; Li, L. J. Clin. Invest. 2006, 116, 1195-1201
4. Calvi, L. M.; Adams, G. B.; Weibrecht, K. W.; Weber, J. M.; Olson, D. P.; Knight, M. C.; Martin, R. P.; Schipani, E.; Divieti, P.; Bringhurst, F. R.; Milner, L. A.; Kronenberg, H. M.; Scadden, D. T. Nature 2003, 425, 841-846
5. Cariappa, A.; Pillai, S. Curr. Opin. Immunol. 2002, 14, 241-249
6. Hardy, R. R.; Hayakawa, K. Annu. Rev. Immunol. 2001, 19, 595-621
7. Yang, L.; Bryder, D.; Adolfsson, J.; Nygren, J.; Mansson, R.; Sigvardsson, M.; Jacobsen, S. E. Blood 2005, 105, 2717-2723
8. Adolfsson, J.; Borge, O. J.; Bryder, D.; Theilgaard-Monch, K.; Astrand-Grundstrom, I.; Sitnicka, E.; Sasaki, Y.; Jacobsen, S. E. Immunity 2001, 15, 659-669
9. Adolfsson, J.; Mansson, R.; Buza-Vidas, N.; Hultquist, A.; Liuba, K.; Jensen, C. T.; Bryder, D.; Yang, L.; Borge, O. J.; Thoren, L. A.; Anderson, K.; Sitnicka, E.; Sasaki, Y.; Sigvardsson, M.; Jacobsen, S. E. Cell 2005, 121, 295-306
10. Daley, G. Q.; Scadden, D. T. Cell 2008, 132, 544-548
11. Martin, T. A.; Caliari, S. R.; Williford, P. D.; Harley, B. A.; Bailey, R. C. Biomaterials 2011, 32, 3949-3957
12. Mei, Y.; Saha, K.; Bogatyrev, S. R.; Yang, J.; Hook, A. L.; Kalcioglu, Z. I.; Cho, S.-W.; Mitalipova, M.; Pyzocha, N.; Rojas, F.; Van Vliet, K. J.; Davies, M. C.; Alexander, M. R.; Langer, R.; Jaenisch, R.; Anderson, D. G. Nat. Mater. 2010, 9, 768-778
13. Luo, W.; Yousaf, M. N. J. Am. Chem. Soc. 2011, 133, 10780-10783
14. Iwasaki, H.; Akashi, K. Oncogene 2007, 26, 6687-6696
15. Kiel, M. J.; Yilmaz, O. H.; Iwashita, T.; Yilmaz, O. H.; Terhorst, C.; Morrison, S. J. Cell 2005, 121, 1109-1121
16. Kulp, K. S.; Berman, E. S. F.; Kinze, M. G.; Shattuck, D. L.; Nelson, E. J.; Wu, L.; Montgomery, J. L.; Felton, J. S.; Wu, K. J. Anal. Chem. 2006, 78, 3651-3658
17. Kurczy, M. E.; Piehowski, P. D.; Van Bell, C. T.; Heien, M. L.; Winograd, N.; Ewing, A. G. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 2751-2756
18. Ostrowski, S. G.; Van Bell, C. T.; Winograd, N.; Ewing, A. G. Science 2004, 305, 71-73
19. Graham, D. J.; Wagner, M. S.; Castner, D. G. Appl. Surf. Sci. 2006, 252, 6860-6868
20. Berman, E. S. F.; Wu, L.; Fortson, S. L.; Kulp, K. S.; Nelson, D. O.; Wu, K. J. Surf. Interface Anal. 2009, 41, 97-104
21. Magnusson, Y. K.; Friberg, P.; Sjovall, P.; Malm, J.; Chen, Y. Obesity 2008, 16, 2745-2753
22. Anderton, C. R.; Vaezian, B.; Lou, K.; Frisz, J. F.; Kraft, M. L. Surf. Interface Anal. 2012, 44, 322-333
23. Vaezian, B.; Anderton, C. R.; Kraft, M. L. Anal. Chem. 2010, 82, 10006-10014
24. Berman, E. S. F.; Kulp, K. S.; Knize, M. G.; Wu, L.; Nelson, E. J.; Nelson, D. O.; Wu, K. J. Anal. Chem. 2006, 78, 6497-6503
25. Baker, M. J.; Brown, M. D.; Gazi, E.; Clarke, N. W.; Vickerman, J. C.; Lockyer, N. P. Analyst 2008, 113, 175-179
26. Jungnickel, H.; Jones, E. A.; Lockyer, N. P.; Oliver, S. G.; Stephens, G. M.; Vickerman, J. C. Anal. Chem. 2005, 77, 1740-1745
27. Thompson, C. E.; Fletcher, J. S.; Goodacre, R.; Henderson, A.; Lockyer, N. P.; Vickerman, J. C. Appl. Surf. Sci. 2006, 252, 6719-6722
28. Thompson, C. E.; Jungnickel, H.; Lockyer, N. P.; Stephens, G. M.; Vickerman, J. C. Appl. Surf. Sci. 2004, 231-232, 420-423
29. May, C. J.; Canavan, H. E.; Castner, D. G. Anal. Chem. 2004, 76, 1114-1122
30. Wagner, M. S.; Castner, D. G. Langmuir 2001, 17, 4649-4660
31. Barnes, C. A.; Brison, J.; Robinson, M.; Graham, D. J.; Castner, D. G.; Ratner, B. D. Anal. Chem. 2012, 84, 893-900
32. Freshney, R. I. In Culture of Animal Cells: A Manual of Basic Technique and Specialized Applications; 6 th ed.; John Wiley & Sons, Inc.: Hoboken, NJ, 2010; pp 1-10.
33. Tokoyoda, K.; Egawa, T.; Sugiyama, T.; Choi, B. I.; Nagasawa, T. Immunity 2004, 20, 707-718
34. Chambers, S. M.; Shaw, C. A.; Gatza, C.; Fisk, C. J.; Donehower, L. A.; Goodell, M. A. PLoS Biol. 2007, 5, e201
35. Mayack, S. R.; Shadrach, J. L.; Kim, F. S.; Wagers, A. J. Nature 2010, 463, 495-500
36. Warren, L. A.; Rossi, D. J. Mech. Ageing Dev. 2009, 130, 46-53
37. Chen, Y.-W.; Lin, M.-S.; Vora, K. A. Int. Immunol. 1992, 4, 1293-1302
38. Schroeder, T. Cell Stem Cell 2010, 6, 203-207
39. das Neves, R. P.; Jones, N. S.; Andreu, L.; Gupta, R.; Enver, T.; Iborra, F. J. PLoS Biol. 2010, 8, e1000560
40. Oran, U.; Unveren, E.; Wirth, T.; Unger, W. E. S. Appl. Surf. Sci. 2004, 227, 318-324
41. Chong, I.-G.; Jun, C.-H. Chemom. Intell. Lab. Syst. 2005, 78, 103-112
42. Musumarra, G.; Barresi, V.; Condorelli, D. F.; Fortuna, C. G.; Scirè, S. J. Chemom. 2004, 18, 125-132
43. Brown, J.; Greaves, M. F.; Molgaard, H. V. Int. Immunol. 1991, 3, 175-184
44. Tang, C.; Lee, A. S.; Volkmer, J.-P.; Sahoo, D.; Nag, D.; Mosley, A. R.; Inlay, M. A.; Ardehali, R.; Chavez, S. L.; Pera, R. R.; Behr, B.; Wu, J. C.; Weissman, I. L.; Drukker, M. Nat. Biotechnol. 2011, 29, 829-834
45. Holst, J.; Watson, S.; Lord, M. S.; Eamegdool, S. S.; Bax, D. V.; Nivison-Smith, L. B.; Kondyurin, A.; Ma, L.; Oberhauser, A. F.; Weiss, A. S.; Rasko, J. E. J. Nat. Biotechnol. 2010, 28, 1123-1128
46. Lutolf, M. P.; Doyonnas, R.; Havenstrite, K.; Koleckar, K.; Blau, H. M. Integr. Biol. 2009, 1, 59-69
47. Rieger, M. A.; Schroeder, T. Cells Tissues Organs 2008, 188, 139-149
48. Yilmaz, O. H.; Kiel, M. J.; Morrison, S. J. Blood 2006, 107, 924-930
49. Houtkooper, R. H.; Argmann, C.; Houten, S. M.; Canto, C.; Jeninga, E. H.; Andreux, P. A.; Thomas, C.; Doenlen, R.; Schoonjans, K.; Auwerx, J. Sci. Rep. 2011, 1, 134.
50. Basaiawmoit, R. V.; Rattan, S. I. S. In Protein Misfolding and Cellular Stress in Disease and Aging: Concepts and Protocols; Bross, P.; Gregersen, N., Ed.; Humana Press: New York, 2010; pp 107-117.
51. Lhoest, J.-B.; Wagner, M. S.; Tidwell, C. D.; Castner, D. G. J. Biomed. Mater. Res. 2001, 57, 432-440
52. Touboul, D.; Kollmer, F.; Niehuis, E.; Brunelle, A.; Laprévote, O. J. Am. Soc. Mass Spectrom. 2005, 16, 1608-1618
53. Passegue, E.; Jamieson, C. H.; Ailles, L. E.; Weissman, I. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (Suppl. 1) 11842-11849