-
1
-
-
0032400828
-
+-dependent glutamate uptake
-
Levy, L. M.; Warr, O.; Attwell, D. Stoichiometry of the glial glutamate transporter GLT-1 expressed inducibly in a Chinese hamster ovary cell line selected for low endogenous Na+-dependent glutamate uptake J. Neurosci. 1998, 18 (23) 9620-9628 (Pubitemid 28543743)
-
(1998)
Journal of Neuroscience
, vol.18
, Issue.23
, pp. 9620-9628
-
-
Levy, L.M.1
Warr, O.2
Attwell, D.3
-
2
-
-
0029860263
-
Flux coupling in a neuronal glutamate transporter
-
DOI 10.1038/383634a0
-
Zerangue, N.; Kavanaugh, M. P. Flux coupling in a neuronal glutamate transporter Nature 1996, 383 (6601) 634-637 (Pubitemid 26347587)
-
(1996)
Nature
, vol.383
, Issue.6601
, pp. 634-637
-
-
Zerangue, N.1
Kavanaugh, M.P.2
-
3
-
-
0029076899
-
An excitatory amino-acid transporter with properties of a ligand-gated chloride channel
-
Fairman, W. A.; Vandenberg, R. J.; Arriza, J. L.; Kavanaugh, M. P.; Amara, S. G. An excitatory amino-acid transporter with properties of a ligand-gated chloride channel Nature 1995, 375 (6532) 599-603
-
(1995)
Nature
, vol.375
, Issue.6532
, pp. 599-603
-
-
Fairman, W.A.1
Vandenberg, R.J.2
Arriza, J.L.3
Kavanaugh, M.P.4
Amara, S.G.5
-
4
-
-
34247635193
-
A leak in the EAATs
-
DOI 10.1038/nsmb0507-356, PII NSMB0507356
-
Miller, C. A leak in the EAATs Nat. Struct. Mol. Biol. 2007, 14 (5) 356-357 (Pubitemid 46685871)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.5
, pp. 356-357
-
-
Miller, C.1
-
5
-
-
2442693929
-
The chloride permeation pathway of a glutamate transporter and its proximity to the glutamate translocation pathway
-
DOI 10.1074/jbc.M304433200
-
Ryan, R. M.; Mitrovic, A. D.; Vandenberg, R. J. The chloride permeation pathway of a glutamate transporter and its proximity to the glutamate translocation pathway J. Biol. Chem. 2004, 279 (20) 20742-20751 (Pubitemid 38656471)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.20
, pp. 20742-20751
-
-
Ryan, R.M.1
Mitrovic, A.D.2
Vandenberg, R.J.3
-
6
-
-
0032912771
-
The glutamate receptor ion channels
-
Dingledine, R.; Borges, K.; Bowie, D.; Traynelis, S. F. The glutamate receptor ion channels Pharmacol. Rev. 1999, 51 (1) 7-61 (Pubitemid 29113865)
-
(1999)
Pharmacological Reviews
, vol.51
, Issue.1
, pp. 7-61
-
-
Dingledine, R.1
Borges, K.2
Bowie, D.3
Traynelis, S.F.4
-
7
-
-
1842524064
-
Glutamate transporters: Animal models to neurologic disease
-
DOI 10.1016/j.nbd.2003.12.007, PII S0969996103002729
-
Maragakis, N. J.; Rothstein, J. D. Glutamate transporters: animal models to neurologic disease Neurobiol. Dis. 2004, 15 (3) 461-473 (Pubitemid 38429961)
-
(2004)
Neurobiology of Disease
, vol.15
, Issue.3
, pp. 461-473
-
-
Maragakis, N.J.1
Rothstein, J.D.2
-
8
-
-
78650940469
-
Loss-of-function mutations in the glutamate transporter SLC1A1 cause human dicarboxylic aminoaciduria
-
Bailey, C. G.; Ryan, R. M.; Thoeng, A. D.; Ng, C.; King, K.; Vanslambrouck, J. M.; Auray-Blais, C.; Vandenberg, R. J.; Br̈er, S.; Rasko, J. E. J. Loss-of-function mutations in the glutamate transporter SLC1A1 cause human dicarboxylic aminoaciduria J. Clin. Invest. 2011, 121 (1) 446-453
-
(2011)
J. Clin. Invest.
, vol.121
, Issue.1
, pp. 446-453
-
-
Bailey, C.G.1
Ryan, R.M.2
Thoeng, A.D.3
Ng, C.4
King, K.5
Vanslambrouck, J.M.6
Auray-Blais, C.7
Vandenberg, R.J.8
Br̈er, S.9
Rasko, J.E.J.10
-
9
-
-
33846505059
-
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter
-
DOI 10.1038/nature05455, PII NATURE05455
-
Boudker, O.; Ryan, R. M.; Yernool, D.; Shimamoto, K.; Gouaux, E. Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter Nature 2007, 445 (7126) 387-393 (Pubitemid 46160902)
-
(2007)
Nature
, vol.445
, Issue.7126
, pp. 387-393
-
-
Boudker, O.1
Ryan, R.M.2
Yernool, D.3
Shimamoto, K.4
Gouaux, E.5
-
10
-
-
72449164409
-
Transport mechanism of a bacterial homologue of glutamate transporters
-
Reyes, N.; Ginter, C.; Boudker, O. Transport mechanism of a bacterial homologue of glutamate transporters Nature 2009, 462 (7275) 880-885
-
(2009)
Nature
, vol.462
, Issue.7275
, pp. 880-885
-
-
Reyes, N.1
Ginter, C.2
Boudker, O.3
-
11
-
-
7244254186
-
Structure of a glutamate transporter homologue from Pyrococcus horikoshii
-
DOI 10.1038/nature03018
-
Yernool, D.; Boudker, O.; Jin, Y.; Gouaux, E. Structure of a glutamate transporter homologue from Pyrococcus horikoshii Nature 2004, 431 (7010) 811-818 (Pubitemid 39434071)
-
(2004)
Nature
, vol.431
, Issue.7010
, pp. 811-818
-
-
Yernool, D.1
Boudker, O.2
Jin, Y.3
Gouaux, E.4
-
12
-
-
77951680965
-
Na+:Aspartate Coupling Stoichiometry in the Glutamate Transporter Homologue GltPh
-
Groeneveld, M.; Slotboom, D.-J. Na+:Aspartate Coupling Stoichiometry in the Glutamate Transporter Homologue GltPh Biochemistry 2010, 49 (17) 3511-3513
-
(2010)
Biochemistry
, vol.49
, Issue.17
, pp. 3511-3513
-
-
Groeneveld, M.1
Slotboom, D.-J.2
-
13
-
-
4544326747
-
A trimeric quaternary structure is conserved in bacterial and human glutamate transporters
-
DOI 10.1074/jbc.M408038200
-
Gendreau, S.; Voswinkel, S.; Torres-Salazar, D.; Lang, N.; Heidtmann, H.; Detro-Dassen, S.; Schmalzing, G.; Hidalgo, P.; Fahlke, C. A trimeric quaternary structure is conserved in bacterial and human glutamate transporters J. Biol. Chem. 2004, 279 (38) 39505-39512 (Pubitemid 39258217)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.38
, pp. 39505-39512
-
-
Gendreau, S.1
Voswinkel, S.2
Torres-Salazar, D.3
Lang, N.4
Heidtmann, H.5
Detro-Dassent, S.6
Schmalzing, G.7
Hidalgo, P.8
Fahlke, C.9
-
14
-
-
0242424106
-
Trimeric Subunit Stoichiometry of the Glutamate Transporters from Bacillus caldotenax and Bacillus stearothermophilus
-
DOI 10.1021/bi030161q
-
Yernool, D.; Boudker, O.; Folta-Stogniew, E.; Gouaux, E. Trimeric subunit stoichiometry of the glutamate transporters from Bacillus caldotenax and Bacillus stearothermophilus Biochemistry 2003, 42 (44) 12981-12988 (Pubitemid 37385830)
-
(2003)
Biochemistry
, vol.42
, Issue.44
, pp. 12981-12988
-
-
Yernool, D.1
Boudker, O.2
Folta-Stogniew, E.3
Gouaux, E.4
-
15
-
-
24344507684
-
Individual subunits of the glutamate transporter EAAC1 homotrimer function independently of each other
-
DOI 10.1021/bi050987n
-
Grewer, C.; Balani, P.; Weidenfeller, C.; Bartusel, T.; Tao, Z.; Rauen, T. Individual subunits of the glutamate transporter EAAC1 homotrimer function independently of each other Biochemistry 2005, 44 (35) 11913-11923 (Pubitemid 41262726)
-
(2005)
Biochemistry
, vol.44
, Issue.35
, pp. 11913-11923
-
-
Grewer, C.1
Balani, P.2
Weidenfeller, C.3
Bartusel, T.4
Tao, Z.5
Rauen, T.6
-
16
-
-
33947318986
-
The glutamate-activated anion conductance in excitatory amino acid transporters is gated independently by the individual subunits
-
DOI 10.1523/JNEUROSCI.0118-07.2007
-
Koch, H. P.; Brown, R. L.; Larsson, H. P. The glutamate-activated anion conductance in excitatory amino acid transporters is gated independently by the individual subunits J. Neurosci. 2007, 27 (11) 2943-2947 (Pubitemid 46438962)
-
(2007)
Journal of Neuroscience
, vol.27
, Issue.11
, pp. 2943-2947
-
-
Koch, H.P.1
Brown, R.L.2
Larsson, H.P.3
-
17
-
-
33947308773
-
The glutamate and chloride permeation pathways are colocalized in individual neuronal glutamate transporter subunits
-
DOI 10.1523/JNEUROSCI.4851-06.2007
-
Leary, G. P.; Stone, E. F.; Holley, D. C.; Kavanaugh, M. P. The glutamate and chloride permeation pathways are colocalized in individual neuronal glutamate transporter subunits J. Neurosci. 2007, 27 (11) 2938-2942 (Pubitemid 46438969)
-
(2007)
Journal of Neuroscience
, vol.27
, Issue.11
, pp. 2938-2942
-
-
Leary, G.P.1
Stone, E.F.2
Holley, D.C.3
Kavanaugh, M.P.4
-
18
-
-
80053084303
-
Large collective motions regulate the functional properties of glutamate transporter trimers
-
Jiang, J.; Shrivastava, I. H.; Watts, S. D.; Bahar, I.; Amara, S. G. Large collective motions regulate the functional properties of glutamate transporter trimers Proc. Natl. Acad. Sci. U.S.A. 2011, 108 (37) 15141-15146
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, Issue.37
, pp. 15141-15146
-
-
Jiang, J.1
Shrivastava, I.H.2
Watts, S.D.3
Bahar, I.4
Amara, S.G.5
-
19
-
-
77956527543
-
Identification of the third Na+ site and the sequence of extracellular binding events in the glutamate transporter
-
Huang, Z.; Tajkhorshid, E. Identification of the third Na+ site and the sequence of extracellular binding events in the glutamate transporter Biophys. J. 2010, 99 (5) 1416-1425
-
(2010)
Biophys. J.
, vol.99
, Issue.5
, pp. 1416-1425
-
-
Huang, Z.1
Tajkhorshid, E.2
-
20
-
-
0020448447
-
Binding order of substrates to the sodium and potassium ion coupled L-glutamic acid transporter from rat brain
-
Kanner, B. I.; Bendahan, A. Binding order of substrates to the sodium and potassium ion coupled L-glutamic acid transporter from rat brain Biochemistry 1982, 21 (24) 6327-6330 (Pubitemid 13141637)
-
(1982)
Biochemistry
, vol.21
, Issue.24
, pp. 6327-6330
-
-
Kanner, B.I.1
Bendahan, A.2
-
21
-
-
77956362466
-
Evidence for a third sodium-binding site in glutamate transporters suggests an ion/substrate coupling model
-
Larsson, H. P.; Wang, X.; Lev, B.; Baconguis, I.; Caplan, D. A.; Vyleta, N. P.; Koch, H. P.; Diez-Sampedro, A.; Noskov, S. Y. Evidence for a third sodium-binding site in glutamate transporters suggests an ion/substrate coupling model Proc. Natl. Acad. Sci. U.S.A. 2010, 107 (31) 13912-13917
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, Issue.31
, pp. 13912-13917
-
-
Larsson, H.P.1
Wang, X.2
Lev, B.3
Baconguis, I.4
Caplan, D.A.5
Vyleta, N.P.6
Koch, H.P.7
Diez-Sampedro, A.8
Noskov, S.Y.9
-
22
-
-
77952907248
-
Mechanism of cation binding to the glutamate transporter EAAC1 probed with mutation of the conserved amino acid residue Thr101
-
Tao, Z.; Rosental, N.; Kanner, B. I.; Gameiro, A.; Mwaura, J.; Grewer, C. Mechanism of cation binding to the glutamate transporter EAAC1 probed with mutation of the conserved amino acid residue Thr101 J. Biol. Chem. 2010, 285 (23) 17725-17733
-
(2010)
J. Biol. Chem.
, vol.285
, Issue.23
, pp. 17725-17733
-
-
Tao, Z.1
Rosental, N.2
Kanner, B.I.3
Gameiro, A.4
Mwaura, J.5
Grewer, C.6
-
23
-
-
57649119782
-
Time-resolved mechanism of extracellular gate opening and substrate binding in a glutamate transporter
-
Shrivastava, I. H.; Jiang, J.; Amara, S. G.; Bahar, I. Time-resolved mechanism of extracellular gate opening and substrate binding in a glutamate transporter J. Biol. Chem. 2008, 283 (42) 28680-28690
-
(2008)
J. Biol. Chem.
, vol.283
, Issue.42
, pp. 28680-28690
-
-
Shrivastava, I.H.1
Jiang, J.2
Amara, S.G.3
Bahar, I.4
-
24
-
-
79951619800
-
The mechanism of substrate release by the aspartate transporter Glt(Ph): Insights from simulations
-
Dechancie, J.; Shrivastava, I. H.; Bahar, I. The mechanism of substrate release by the aspartate transporter Glt(Ph): insights from simulations Mol. Biosyst. 2011, 7 (3) 832-842
-
(2011)
Mol. Biosyst.
, vol.7
, Issue.3
, pp. 832-842
-
-
Dechancie, J.1
Shrivastava, I.H.2
Bahar, I.3
-
25
-
-
0003896351
-
-
Kluwer Academic Publishers: Norwell, MA.
-
Latombe, J.-C. Robot Motion Planning; Kluwer Academic Publishers: Norwell, MA, 1991.
-
(1991)
Robot Motion Planning
-
-
Latombe, J.-C.1
-
26
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion, M. M. Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis Phys. Rev. Lett. 1996, 77 (9) 1905-1908 (Pubitemid 126625816)
-
(1996)
Physical Review Letters
, vol.77
, Issue.9
, pp. 1905-1908
-
-
Tirion, M.M.1
-
27
-
-
61449189835
-
Rapid sampling of molecular motions with prior information constraints
-
Raveh, B.; Enosh, A.; Schueler-Furman, O.; Halperin, D. Rapid sampling of molecular motions with prior information constraints PLoS Comput Biol 2009, 5 (2) e1000295
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.2
, pp. 1000295
-
-
Raveh, B.1
Enosh, A.2
Schueler-Furman, O.3
Halperin, D.4
-
28
-
-
1642464839
-
Protein Structure Prediction Using Rosetta
-
DOI 10.1016/S0076-6879(04)83004-0
-
Rohl, C. A.; Strauss, C. E. M.; Misura, K. M. S.; Baker, D. Protein structure prediction using Rosetta Methods Enzymol. 2004, 383, 66-93 (Pubitemid 38401787)
-
(2004)
Methods in Enzymology
, vol.383
, pp. 66-93
-
-
Rohl, C.A.1
Strauss, C.E.M.2
Misura, K.M.S.3
Baker, D.4
-
29
-
-
34250820338
-
-
Kluwer Academic Publishers: Norwell, MA, Chapter 1.
-
Lavalle, S. M.; Kuffner, J. J., Jr. Rapidly-Exploring Random Trees: Progress and Prospects of Algorithmic and Computational Robotics: New Directions; Kluwer Academic Publishers: Norwell, MA, 2000; Chapter 1, 293-308.
-
(2000)
Rapidly-Exploring Random Trees: Progress and Prospects of Algorithmic and Computational Robotics: New Directions
, pp. 293-308
-
-
Lavalle, S.M.1
Kuffner Jr., J.J.2
-
30
-
-
34548148634
-
Rigidity of the Subunit Interfaces of the Trimeric Glutamate Transporter GltT During Translocation
-
DOI 10.1016/j.jmb.2007.06.067, PII S0022283607008741
-
Groeneveld, M.; Slotboom, D.-J. Rigidity of the subunit interfaces of the trimeric glutamate transporter GltT during translocation J. Mol. Biol. 2007, 372 (3) 565-570 (Pubitemid 47313480)
-
(2007)
Journal of Molecular Biology
, vol.372
, Issue.3
, pp. 565-570
-
-
Groeneveld, M.1
Slotboom, D.-J.2
-
31
-
-
0033012333
-
A self-consistent, microenvironment modulated screened Coulomb potential approximation to calculate pH-dependent electrostatic effects in proteins
-
Mehler, E. L.; Guarnieri, F. A self-consistent, microenvironment modulated screened coulomb potential approximation to calculate pH-dependent electrostatic effects in proteins Biophys. J. 1999, 77 (1) 3-22 (Pubitemid 29305207)
-
(1999)
Biophysical Journal
, vol.77
, Issue.1
, pp. 3-22
-
-
Mehler, E.L.1
Guarnieri, F.2
-
32
-
-
33747863016
-
ArchPRED: A template based loop structure prediction server
-
Fernandez-Fuentes, N.; Zhai, J.; Fiser, A. s. ArchPRED: a template based loop structure prediction server Nucleic Acids Res. 2006, 34 (Web Server issue) W173-W176
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.WEB SERVER ISSUE
-
-
Fernandez-Fuentes, N.1
Zhai, J.2
Fiser, A.S.3
-
33
-
-
0035967880
-
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
DOI 10.1006/jmbi.2001.4762
-
Shi, J.; Blundell, T. L.; Mizuguchi, K. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties J. Mol. Biol. 2001, 310 (1) 243-257 (Pubitemid 32619966)
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.1
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
34
-
-
70350738240
-
Regulation of the protein-conducting channel by a bound ribosome
-
Gumbart, J.; Trabuco, L. G.; Schreiner, E.; Villa, E.; Schulten, K. Regulation of the protein-conducting channel by a bound ribosome Structure 2009, 17 (11) 1453-1464
-
(2009)
Structure
, vol.17
, Issue.11
, pp. 1453-1464
-
-
Gumbart, J.1
Trabuco, L.G.2
Schreiner, E.3
Villa, E.4
Schulten, K.5
-
35
-
-
0029937870
-
Hydrophilicity of cavities in proteins
-
DOI 10.1002/(SICI)1097-0134(199604)24:4<433::AID-PROT3>3.0.CO;2-F
-
Zhang, L.; Hermans, J. Hydrophilicity of cavities in proteins Proteins: Struct, Funct, Genet 1996, 24 (4) 433-438 (Pubitemid 26122057)
-
(1996)
Proteins: Structure, Function and Genetics
, vol.24
, Issue.4
, pp. 433-438
-
-
Zhang, L.1
Hermans, J.2
-
36
-
-
84988080188
-
Generic solvent sites in a crystal
-
Mezei, M.; Beveridge, D. L. Generic solvent sites in a crystal J. Comput. Chem. 1984, 5 (6) 523-527
-
(1984)
J. Comput. Chem.
, vol.5
, Issue.6
, pp. 523-527
-
-
Mezei, M.1
Beveridge, D.L.2
-
37
-
-
16344362822
-
TMDET: Web server for detecting transmembrane regions of proteins by using their 3D coordinates
-
DOI 10.1093/bioinformatics/bti121
-
Tusnady, G. E.; Dosztanyi, Z.; Simon, I. TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates Bioinformatics 2005, 21 (7) 1276-1277 (Pubitemid 40467959)
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1276-1277
-
-
Tusnady, G.E.1
Dosztanyi, Z.2
Simon, I.3
-
38
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD: Visual molecular dynamics J. Mol. Graphics 1996, 14 (1) 33-38 (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
39
-
-
67650500988
-
CHARMM: The Biomolecular Simulation Program
-
Brooks, B. R.; Brooks, C. L.; Mackerell, A. D.; Nilsson, L.; Petrella, R. J.; Roux, B.; Won, Y.; Archontis, G.; Bartels, C.; Boresch, S.; Caflisch, A.; Caves, L.; Cui, Q.; Dinner, A. R.; Feig, M.; Fischer, S.; Gao, J.; Hodoscek, M.; Im, W.; Kuczera, K.; Lazaridis, T.; Ma, J.; Ovchinnikov, V.; Paci, E.; Pastor, R. W.; Post, C. B.; Pu, J. Z.; Schaefer, M.; Tidor, B.; Venable, R. M.; Woodcock, H. L.; Wu, X.; Yang, W.; York, D. M.; Karplus, M. CHARMM: The Biomolecular Simulation Program J. Comput. Chem. 2009, 30 (10) 1545-1614
-
(2009)
J. Comput. Chem.
, vol.30
, Issue.10
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks, C.L.2
MacKerell, A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
40
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. Scalable molecular dynamics with NAMD J. Comput. Chem. 2005, 26 (16) 1781-1802 (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
41
-
-
48749148224
-
Rattle: A velocity version of the shake algorithm for molecular dynamics calculations
-
Andersen, H. C. Rattle: A velocity version of the shake algorithm for molecular dynamics calculations J. Comput. Phys. 1983, 52 (1) 24-34
-
(1983)
J. Comput. Phys.
, vol.52
, Issue.1
, pp. 24-34
-
-
Andersen, H.C.1
-
42
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.-P.; Ciccotti, G.; Berendsen, H. J. C. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes J. Comput. Phys. 1977, 23 (3) 327-341
-
(1977)
J. Comput. Phys.
, vol.23
, Issue.3
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
43
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
DOI 10.1002/prot.340230412
-
Frishman, D.; Argos, P. Knowledge-based protein secondary structure assignment Proteins 1995, 23 (4) 566-579 (Pubitemid 26009520)
-
(1995)
Proteins: Structure, Function and Genetics
, vol.23
, Issue.4
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
44
-
-
33745213575
-
PHASE: A Novel Approach to Pharmacophore Modeling and 3D Database Searching
-
Dixson, S.; Smondyrev, A. M.; Rao, S. N. PHASE: A Novel Approach to Pharmacophore Modeling and 3D Database Searching Chem. Bioline Drug Des. 2006, 67, 370-372
-
(2006)
Chem. Bioline Drug Des.
, vol.67
, pp. 370-372
-
-
Dixson, S.1
Smondyrev, A.M.2
Rao, S.N.3
-
46
-
-
0003742069
-
-
Department of Biochemistry and Molecular Biology, University College: London.
-
Hubbard, S. J.; Thornton, J. M. NACCESS, Computer Program; Department of Biochemistry and Molecular Biology, University College: London, 1993.
-
(1993)
NACCESS, Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
47
-
-
4444382786
-
A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins
-
DOI 10.1093/bioinformatics/bth143
-
Beuming, T.; Weinstein, H. A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins Bioinformatics 2004, 20 (12) 1822-1835 (Pubitemid 39199046)
-
(2004)
Bioinformatics
, vol.20
, Issue.12
, pp. 1822-1835
-
-
Beuming, T.1
Weinstein, H.2
-
48
-
-
52649130704
-
Protein-protein interaction and quaternary structure
-
Janin, J. l.; Bahadur, R. P.; Chakrabarti, P. Protein-protein interaction and quaternary structure Q. Rev. Biophys. 2008, 41 (2) 133-180
-
(2008)
Q. Rev. Biophys.
, vol.41
, Issue.2
, pp. 133-180
-
-
Bahadur, R.P.1
Chakrabarti, P.2
-
49
-
-
34548304871
-
Protein conformational transitions explored by mixed elastic network models
-
DOI 10.1002/prot.21465
-
Zheng, W.; Brooks, B. R.; Hummer, G. Protein conformational transitions explored by mixed elastic network models Proteins 2007, 69 (1) 43-57 (Pubitemid 47339138)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.1
, pp. 43-57
-
-
Zheng, W.1
Brooks, B.R.2
Hummer, G.3
-
50
-
-
69249187438
-
Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion
-
Stember, J. N.; Wriggers, W. Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion J. Chem. Phys. 2009, 131 (7) 074112
-
(2009)
J. Chem. Phys.
, vol.131
, Issue.7
, pp. 074112
-
-
Stember, J.N.1
Wriggers, W.2
-
51
-
-
0034967684
-
Early intermediates in the transport cycle of the neuronal excitatory amino acid carrier EAAC1
-
DOI 10.1085/jgp.117.6.547
-
Watzke, N.; Bamberg, E.; Grewer, C. Early Intermediates in the Transport Cycle of the Neuronal Excitatory Amino Acid Carrier EAAC1 J. Gen. Physiol. 2001, 117 (6) 547-562 (Pubitemid 32552263)
-
(2001)
Journal of General Physiology
, vol.117
, Issue.6
, pp. 547-562
-
-
Watzke, N.1
Bamberg, E.2
Grewer, C.3
-
52
-
-
77955644600
-
The 3-4 loop of an archaeal glutamate transporter homolog experiences ligand-induced structural changes and is essential for transport
-
Compton, E. L. R.; Taylor, E. M.; Mindell, J. A. The 3-4 loop of an archaeal glutamate transporter homolog experiences ligand-induced structural changes and is essential for transport Proc. Natl. Acad. Sci. U.S.A. 2010, 107 (29) 12840-12845
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, Issue.29
, pp. 12840-12845
-
-
Compton, E.L.R.1
Taylor, E.M.2
Mindell, J.A.3
-
53
-
-
72249097775
-
Gating transition of pentameric ligand-gated ion channels
-
Zhu, F.; Hummer, G. Gating transition of pentameric ligand-gated ion channels Biophys. J. 2009, 97 (9) 2456-2463
-
(2009)
Biophys. J.
, vol.97
, Issue.9
, pp. 2456-2463
-
-
Zhu, F.1
Hummer, G.2
-
54
-
-
0033681163
-
A model for the topology of excitatory amino acid transporters determined by the extracellular accessibility of substituted cysteines
-
Seal, R. P.; Leighton, B. H.; Amara, S. G. A model for the topology of excitatory amino acid transporters determined by the extracellular accessibility of substituted cysteines Neuron 2000, 25 (3) 695-706
-
(2000)
Neuron
, vol.25
, Issue.3
, pp. 695-706
-
-
Seal, R.P.1
Leighton, B.H.2
Amara, S.G.3
-
55
-
-
26944479295
-
Sulfhydryl modification of cysteine mutants of a neuronal glutamate transporter reveals an inverse relationship between sodium dependent conformational changes and the glutamate-gated anion conductance
-
DOI 10.1016/j.neuropharm.2005.07.005, PII S0028390805002509, New Perspectives in Neurotransmitter Transporter Biology
-
Shachnai, L.; Shimamoto, K.; Kanner, B. I. Sulfhydryl modification of cysteine mutants of a neuronal glutamate transporter reveals an inverse relationship between sodium dependent conformational changes and the glutamate-gated anion conductance Neuropharmacology 2005, 49 (6) 862-871 (Pubitemid 41483892)
-
(2005)
Neuropharmacology
, vol.49
, Issue.6
, pp. 862-871
-
-
Shachnai, L.1
Shimamoto, K.2
Kanner, B.I.3
-
56
-
-
77953857777
-
The position of an arginine residue influences substrate affinity and K coupling in the human glutamate transporter, EAAT1
-
Ryan, R. M.; Kortt, N. C.; Sirivanta, T.; Vandenberg, R. J. The position of an arginine residue influences substrate affinity and K coupling in the human glutamate transporter, EAAT1 J. Neurochem. 2010, 114 (2) 565-575
-
(2010)
J. Neurochem.
, vol.114
, Issue.2
, pp. 565-575
-
-
Ryan, R.M.1
Kortt, N.C.2
Sirivanta, T.3
Vandenberg, R.J.4
-
57
-
-
79955780433
-
Opposite Movement of the External Gate of a Glutamate Transporter Homolog upon Binding Cotransported Sodium Compared with Substrate
-
Focke, P. J.; Moenne-Loccoz, P.; Larsson, H. P. Opposite Movement of the External Gate of a Glutamate Transporter Homolog upon Binding Cotransported Sodium Compared with Substrate J. Neurosci. 2011, 31 (16) 6255-6262
-
(2011)
J. Neurosci.
, vol.31
, Issue.16
, pp. 6255-6262
-
-
Focke, P.J.1
Moenne-Loccoz, P.2
Larsson, H.P.3
-
58
-
-
56049102616
-
Generation, comparison, and merging of pathways between protein conformations: Gating in K-channels
-
Enosh, A.; Raveh, B.; Furman-Schueler, O.; Halperin, D.; Ben-Tal, N. Generation, comparison, and merging of pathways between protein conformations: gating in K-channels Biophys. J. 2008, 95 (8) 3850-3860
-
(2008)
Biophys. J.
, vol.95
, Issue.8
, pp. 3850-3860
-
-
Enosh, A.1
Raveh, B.2
Furman-Schueler, O.3
Halperin, D.4
Ben-Tal, N.5
-
59
-
-
77955644600
-
The 3-4 loop of an archaeal glutamate transporter homolog experiences ligand-induced structural changes and is essential for transport
-
Compton, E. L. R.; Taylor, E. M.; Mindell, J. A. The 3-4 loop of an archaeal glutamate transporter homolog experiences ligand-induced structural changes and is essential for transport Proc. Natl. Acad. Sci. U.S.A. 2011, 107 (29) 12840-12845
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, Issue.29
, pp. 12840-12845
-
-
Compton, E.L.R.1
Taylor, E.M.2
Mindell, J.A.3
-
61
-
-
17044393884
-
Coarse-grained models for proteins
-
Tozzini, V. Coarse-grained models for proteins Curr. Opin. Struct. Biol. 2005, 15 (2) 144-150
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, Issue.2
, pp. 144-150
-
-
Tozzini, V.1
-
62
-
-
77953553259
-
Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures
-
Zheng, W. Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures Biophys. J. 2010, 98 (12) 3025-3034
-
(2010)
Biophys. J.
, vol.98
, Issue.12
, pp. 3025-3034
-
-
Zheng, W.1
-
63
-
-
84861057484
-
-
John Wiley & Sons, Inc. Hoboken, NJ.
-
Liapakis, G.; Simpson, M. M.; Javitch, J. A. The Substituted-Cysteine Accessibility Method (SCAM) to Elucidate Membrane Protein Structure; John Wiley & Sons, Inc.: Hoboken, NJ, 2001.
-
(2001)
The Substituted-Cysteine Accessibility Method (SCAM) to Elucidate Membrane Protein Structure
-
-
Liapakis, G.1
Simpson, M.M.2
Javitch, J.A.3
-
64
-
-
0035815643
-
Cysteine-scanning Mutagenesis Reveals a Highly Amphipathic, Pore-lining Membrane-spanning Helix in the Glutamate Transporter GltT
-
DOI 10.1074/jbc.M011064200
-
Slotboom, D. J.; Konings, W. N.; Lolkema, J. S. Cysteine-scanning mutagenesis reveals a highly amphipathic, pore-lining membrane-spanning helix in the glutamate transporter GltT J. Biol. Chem. 2001, 276 (14) 10775-10781 (Pubitemid 38089251)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.14
, pp. 10775-10781
-
-
Slotboom, D.J.1
Konings, W.N.2
Lolkema, J.S.3
-
65
-
-
84856096107
-
The Accessibility in the External Part of the TM5 of the Glutamate Transporter EAAT1 Is Conformationally Sensitive during the Transport Cycle
-
Zhang, X.; Qu, S. The Accessibility in the External Part of the TM5 of the Glutamate Transporter EAAT1 Is Conformationally Sensitive during the Transport Cycle PLoS One 2012, 7 (1) e30961
-
(2012)
PLoS One
, vol.7
, Issue.1
, pp. 30961
-
-
Zhang, X.1
Qu, S.2
-
66
-
-
84857992685
-
Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog
-
Verdon, G.; Boudker, O. Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog Nat. Struct. Mol. Biol. 2011, 19 (3) 355-357
-
(2011)
Nat. Struct. Mol. Biol.
, vol.19
, Issue.3
, pp. 355-357
-
-
Verdon, G.1
Boudker, O.2
|