메뉴 건너뛰기




Volumn 12, Issue 8, 2012, Pages 1289-1299

Application of targeted proteomics to metabolically engineered Escherichia coli

Author keywords

Cell biology; E. coli; Metabolic engineering; Mevalonate pathway; Targeted proteomics; Tyrosine production

Indexed keywords

BACTERIAL PROTEIN; MEVALONIC ACID; RED FLUORESCENT PROTEIN; TYROSINE;

EID: 84860855750     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100482     Document Type: Article
Times cited : (23)

References (41)
  • 1
    • 38749148516 scopus 로고    scopus 로고
    • Synthetic biology for synthetic chemistry
    • Keasling, J. D., Synthetic biology for synthetic chemistry. ACS Chem. Biol. 2008, 3, 64-76.
    • (2008) ACS Chem. Biol , vol.3 , pp. 64-76
    • Keasling, J.D.1
  • 2
    • 62649122977 scopus 로고    scopus 로고
    • Synthetic metabolism: engineering biology at the protein and pathway scales
    • Martin, C. H., Nielsen, D. R., Solomon, K. V., Prather, K. L. J., Synthetic metabolism: engineering biology at the protein and pathway scales. Chem. Biol. 2009, 16, 277-286.
    • (2009) Chem. Biol , vol.16 , pp. 277-286
    • Martin, C.H.1    Nielsen, D.R.2    Solomon, K.V.3    Prather, K.L.J.4
  • 3
    • 45049086849 scopus 로고    scopus 로고
    • Biofuel alternatives to ethanol: pumping the microbial well
    • Fortman, J. L., Chhabra, S., Mukhopadhyay, A., Chou, H. et al., Biofuel alternatives to ethanol: pumping the microbial well. Trends Biotechnol. 2008, 26, 375-381.
    • (2008) Trends Biotechnol , vol.26 , pp. 375-381
    • Fortman, J.L.1    Chhabra, S.2    Mukhopadhyay, A.3    Chou, H.4
  • 4
    • 66349139329 scopus 로고    scopus 로고
    • New microbial fuels: a biotech perspective
    • Rude, M. A., Schirmer, A., New microbial fuels: a biotech perspective. Curr. Opin. Microbiol. 2009, 12, 274-281.
    • (2009) Curr. Opin. Microbiol , vol.12 , pp. 274-281
    • Rude, M.A.1    Schirmer, A.2
  • 5
    • 44949252217 scopus 로고    scopus 로고
    • Strategies for systems-level metabolic engineering
    • Kim, T. Y., Sohn, S. B., Kim, H. U., Lee, S. Y., Strategies for systems-level metabolic engineering. Biotechnol. J. 2008, 3, 612-623.
    • (2008) Biotechnol. J , vol.3 , pp. 612-623
    • Kim, T.Y.1    Sohn, S.B.2    Kim, H.U.3    Lee, S.Y.4
  • 6
    • 79959252381 scopus 로고    scopus 로고
    • Constructing de novo biosynthetic pathways for chemical synthesis inside living cells
    • Weeks, A. M., Chang, M. C. Y., Constructing de novo biosynthetic pathways for chemical synthesis inside living cells. Biochemistry 2011, 50, 5404-5418.
    • (2011) Biochemistry , vol.50 , pp. 5404-5418
    • Weeks, A.M.1    Chang, M.C.Y.2
  • 7
    • 70349199628 scopus 로고    scopus 로고
    • Design parameters to control synthetic gene expression in Escherichia coli
    • Welch, M., Govindarajan, S., Ness, J. E., Villalobos, A. et al., Design parameters to control synthetic gene expression in Escherichia coli. PLoS One 2009, 4, e7002.
    • (2009) PLoS One , vol.4
    • Welch, M.1    Govindarajan, S.2    Ness, J.E.3    Villalobos, A.4
  • 9
    • 79955710914 scopus 로고    scopus 로고
    • Eugene - a domain specific language for specifying and constraining synthetic biological parts, devices, and systems
    • Bilitchenko, L., Liu, A., Cheung, S., Weeding, E. et al., Eugene - a domain specific language for specifying and constraining synthetic biological parts, devices, and systems. PLoS One 2011, 6, e18882.
    • (2011) PLoS One , vol.6
    • Bilitchenko, L.1    Liu, A.2    Cheung, S.3    Weeding, E.4
  • 10
    • 56949108549 scopus 로고    scopus 로고
    • Toward scalable parts families for predictable design of biological circuits
    • Lucks, J. B., Qi, L., Whitaker, W. R., Arkin, A. P., Toward scalable parts families for predictable design of biological circuits. Curr. Opin. Microbiol. 2008, 11, 567-573.
    • (2008) Curr. Opin. Microbiol , vol.11 , pp. 567-573
    • Lucks, J.B.1    Qi, L.2    Whitaker, W.R.3    Arkin, A.P.4
  • 11
    • 77949314199 scopus 로고    scopus 로고
    • Toward engineering synthetic microbial metabolism
    • McArthur, G. H., Fong, S. S., Toward engineering synthetic microbial metabolism. J. Biomed. Biotechnol. 2010, 459760.
    • (2010) J. Biomed. Biotechnol , pp. 459760
    • McArthur, G.H.1    Fong, S.S.2
  • 12
    • 78651406505 scopus 로고    scopus 로고
    • Distributed biological computation with multicellular engineered networks
    • Regot, S., Macia, J., Conde, N., Furukawa, K. et al., Distributed biological computation with multicellular engineered networks. Nature 2011, 469, 207-211.
    • (2011) Nature , vol.469 , pp. 207-211
    • Regot, S.1    Macia, J.2    Conde, N.3    Furukawa, K.4
  • 13
    • 66149143984 scopus 로고    scopus 로고
    • Measuring the activity of BioBrick promoters using an in vivo reference standard
    • Kelly, J., Rubin, A., Davis, J., Ajo-Franklin, C. et al., Measuring the activity of BioBrick promoters using an in vivo reference standard. J. Biol. Eng. 2009, 3, 4.
    • (2009) J. Biol. Eng , vol.3 , pp. 4
    • Kelly, J.1    Rubin, A.2    Davis, J.3    Ajo-Franklin, C.4
  • 14
    • 46949091517 scopus 로고    scopus 로고
    • Refinement and standardization of synthetic biological parts and devices
    • Canton, B., Labno, A., Endy, D., Refinement and standardization of synthetic biological parts and devices. Nat. Biotechnol. 2008, 26, 787-793.
    • (2008) Nat. Biotechnol , vol.26 , pp. 787-793
    • Canton, B.1    Labno, A.2    Endy, D.3
  • 15
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis, H. M., Mirsky, E. A., Voigt, C. A., Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 2009, 27, 946-950.
    • (2009) Nat. Biotechnol , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 16
    • 77649305316 scopus 로고    scopus 로고
    • BglBricks: a flexible standard for biological part assembly
    • Anderson, J. C., Dueber, J., Leguia, M., Wu, G. et al., BglBricks: a flexible standard for biological part assembly. J. Biol. Eng. 2010, 4, 1.
    • (2010) J. Biol. Eng , vol.4 , pp. 1
    • Anderson, J.C.1    Dueber, J.2    Leguia, M.3    Wu, G.4
  • 17
    • 79960029354 scopus 로고    scopus 로고
    • GLAMM: genome-linked application for metabolic maps
    • Bates, J. T., Chivian, D., Arkin, A. P., GLAMM: genome-linked application for metabolic maps. Nucleic Acids Res. 2011, 39, W400-W405.
    • (2011) Nucleic Acids Res , vol.39
    • Bates, J.T.1    Chivian, D.2    Arkin, A.P.3
  • 18
    • 79952580842 scopus 로고    scopus 로고
    • Improving N-glycosylation efficiency in Escherichia coli using shotgun proteomics, metabolic network analysis, and selective reaction monitoring
    • Pandhal, J., Ow, S. Y., Noirel, J., Wright, P. C., Improving N-glycosylation efficiency in Escherichia coli using shotgun proteomics, metabolic network analysis, and selective reaction monitoring. Biotechnol. Bioeng. 2011, 108, 902-912.
    • (2011) Biotechnol. Bioeng , vol.108 , pp. 902-912
    • Pandhal, J.1    Ow, S.Y.2    Noirel, J.3    Wright, P.C.4
  • 19
    • 70349318190 scopus 로고    scopus 로고
    • Systems biology meets synthetic biology: a case study of the metabolic effects of synthetic rewiring
    • Noirel, J., Ow, S. Y., Sanguinetti, G., Wright, P. C., Systems biology meets synthetic biology: a case study of the metabolic effects of synthetic rewiring. Mol. BioSys. 2009, 5, 1214-1223.
    • (2009) Mol. BioSys , vol.5 , pp. 1214-1223
    • Noirel, J.1    Ow, S.Y.2    Sanguinetti, G.3    Wright, P.C.4
  • 20
    • 68749094119 scopus 로고    scopus 로고
    • Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
    • Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B. et al., Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138, 795-806.
    • (2009) Cell , vol.138 , pp. 795-806
    • Picotti, P.1    Bodenmiller, B.2    Mueller, L.N.3    Domon, B.4
  • 21
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • Stahl-Zeng, J., Lange, V., Ossola, R., Eckhardt, K. et al., High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol. Cell. Proteomics 2007, 6, 1809-1817.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardt, K.4
  • 22
    • 79952108014 scopus 로고    scopus 로고
    • Targeted proteomics for metabolic pathway optimization: application to terpene production
    • Redding-Johanson, A. M., Batth, T. S., Chan, R., Krupa, R. et al., Targeted proteomics for metabolic pathway optimization: application to terpene production. Metab. Eng. 2011, 13, 194-203.
    • (2011) Metab. Eng , vol.13 , pp. 194-203
    • Redding-Johanson, A.M.1    Batth, T.S.2    Chan, R.3    Krupa, R.4
  • 23
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A., Wanner, B. L., One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 6640.
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 6640
    • Datsenko, K.A.1    Wanner, B.L.2
  • 25
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean, B., Tomazela, D. M., Shulman, N., Chambers, M. et al., Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010, 26, 966-968.
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • MacLean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4
  • 26
    • 0038391517 scopus 로고    scopus 로고
    • Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
    • Martin, V. J. J., Pitera, D. J., Withers, S. T., Newman, J. D. et al., Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat. Biotechnol. 2003, 21, 796-802.
    • (2003) Nat. Biotechnol , vol.21 , pp. 796-802
    • Martin, V.J.J.1    Pitera, D.J.2    Withers, S.T.3    Newman, J.D.4
  • 27
    • 84879142653 scopus 로고    scopus 로고
    • High-level production of Amorpha-4,11-Diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli
    • Tsuruta, H., Paddon, C. J., Eng, D., Lenihan, J. R. et al., High-level production of Amorpha-4, 11-Diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli. PLoS One 2009, 4, e4489.
    • (2009) PLoS One , vol.4
    • Tsuruta, H.1    Paddon, C.J.2    Eng, D.3    Lenihan, J.R.4
  • 28
    • 80555123167 scopus 로고    scopus 로고
    • Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases
    • Ma, S. M., Garcia, D. E., Redding-Johanson, A. M., Friedland, G. D. et al., Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases. Metab. Eng. 2011, 13, 588-597.
    • (2011) Metab. Eng , vol.13 , pp. 588-597
    • Ma, S.M.1    Garcia, D.E.2    Redding-Johanson, A.M.3    Friedland, G.D.4
  • 29
    • 33847309176 scopus 로고    scopus 로고
    • Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli
    • Pitera, D. J., Paddon, C. J., Newman, J. D., Keasling, J. D., Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab. Eng. 2007, 9, 193-207.
    • (2007) Metab. Eng , vol.9 , pp. 193-207
    • Pitera, D.J.1    Paddon, C.J.2    Newman, J.D.3    Keasling, J.D.4
  • 30
    • 55549116661 scopus 로고    scopus 로고
    • Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene
    • Anthony, J. R., Anthony, L. C., Nowroozi, F., Kwon, G. et al., Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4, 11-diene. Metab. Eng. 2009, 11, 13-19.
    • (2009) Metab. Eng , vol.11 , pp. 13-19
    • Anthony, J.R.1    Anthony, L.C.2    Nowroozi, F.3    Kwon, G.4
  • 31
    • 79951565301 scopus 로고    scopus 로고
    • Design, construction and characterization of a set of insulated bacterial promoters
    • Davis, J. H., Rubin, A. J., Sauer, R. T., Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Res. 2011, 39, 1131-1141.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1131-1141
    • Davis, J.H.1    Rubin, A.J.2    Sauer, R.T.3
  • 32
    • 34547435219 scopus 로고    scopus 로고
    • From scratch to value: engineering Escherichia coli wild type cells to the production of L-phenylalanine and other fine chemicals derived from chorismate
    • Sprenger, G., From scratch to value: engineering Escherichia coli wild type cells to the production of L-phenylalanine and other fine chemicals derived from chorismate. Appl. Microbiol. Biotechnol. 2007, 75, 739-749.
    • (2007) Appl. Microbiol. Biotechnol , vol.75 , pp. 739-749
    • Sprenger, G.1
  • 33
    • 70449715238 scopus 로고    scopus 로고
    • Production of aromatic compounds in bacteria
    • Gosset, G., Production of aromatic compounds in bacteria. Curr. Opin. Biotechnol. 2009, 20, 651-658.
    • (2009) Curr. Opin. Biotechnol , vol.20 , pp. 651-658
    • Gosset, G.1
  • 34
    • 32044431846 scopus 로고    scopus 로고
    • Feedback inhibition of chorismate mutase/prephenate dehydrogenase (TyrA) of Escherichia coli: generation and characterization of tyrosine-insensitive mutants
    • Lutke-Eversloh, T., Stephanopoulos, G., Feedback inhibition of chorismate mutase/prephenate dehydrogenase (TyrA) of Escherichia coli: generation and characterization of tyrosine-insensitive mutants. Appl. Environ. Microbiol. 2005, 71, 7224-7228.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7224-7228
    • Lutke-Eversloh, T.1    Stephanopoulos, G.2
  • 35
    • 34247593085 scopus 로고    scopus 로고
    • L-tyrosine production by deregulated strains of Escherichia coli
    • Lutke-Eversloh, T., Stephanopoulos, G., L-tyrosine production by deregulated strains of Escherichia coli. Appl. Microbiol. Biotechnol. 2007, 75, 103-110.
    • (2007) Appl. Microbiol. Biotechnol , vol.75 , pp. 103-110
    • Lutke-Eversloh, T.1    Stephanopoulos, G.2
  • 38
    • 39849084210 scopus 로고    scopus 로고
    • Combinatorial pathway analysis for improved L-tyrosine production in Escherichia coli: identification of enzymatic bottlenecks by systematic gene overexpression
    • Lutke-Eversloh, T., Stephanopoulos, G., Combinatorial pathway analysis for improved L-tyrosine production in Escherichia coli: identification of enzymatic bottlenecks by systematic gene overexpression. Metab. Eng. 2008, 10, 69-77.
    • (2008) Metab. Eng , vol.10 , pp. 69-77
    • Lutke-Eversloh, T.1    Stephanopoulos, G.2
  • 39
    • 33947275439 scopus 로고    scopus 로고
    • Production of tyrosine from sucrose or glucose achieved by rapid genetic changes to phenylalanine-producing Escherichia coli strains
    • Olson, M. M., Templeton, L. J., Suh, W., Youderian, P. et al., Production of tyrosine from sucrose or glucose achieved by rapid genetic changes to phenylalanine-producing Escherichia coli strains. Appl. Microbiol. Biotechnol. 2007, 74, 1031-1040.
    • (2007) Appl. Microbiol. Biotechnol , vol.74 , pp. 1031-1040
    • Olson, M.M.1    Templeton, L.J.2    Suh, W.3    Youderian, P.4
  • 40
    • 21644477408 scopus 로고    scopus 로고
    • RpoS-mediated growth-dependent expression of the Escherichia coli tkt genes encoding transketolases isoenzymes
    • Jung, I. L., Phyo, K. H., Kim, I. G., RpoS-mediated growth-dependent expression of the Escherichia coli tkt genes encoding transketolases isoenzymes. Curr. Microbiol. 2005, 50, 314-318.
    • (2005) Curr. Microbiol , vol.50 , pp. 314-318
    • Jung, I.L.1    Phyo, K.H.2    Kim, I.G.3
  • 41
    • 79953227740 scopus 로고    scopus 로고
    • Increased selectivity, analytical precision, and throughput in targeted proteomics
    • doi:10.1074/mcp.M110.002931.
    • Kiyonami, R., Schoen, A., Prakash, A., Peterman, S. et al., Increased selectivity, analytical precision, and throughput in targeted proteomics. Mol. Cell. Proteomics 2011, 10, doi:10.1074/mcp.M110.002931.
    • (2011) Mol. Cell. Proteomics , vol.10
    • Kiyonami, R.1    Schoen, A.2    Prakash, A.3    Peterman, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.