-
1
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
N. L. Anderson N. G. Anderson The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteomics 2002 1 11 845 867
-
(2002)
Mol. Cell. Proteomics
, vol.1
, Issue.11
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
3
-
-
0025889001
-
Regulation of enzyme activity in the cell: Effect of enzyme concentration
-
J. J. Aragón A. Sols Regulation of enzyme activity in the cell: effect of enzyme concentration FASEB J. 1991 5 14 2945 2950
-
(1991)
FASEB J.
, vol.5
, Issue.14
, pp. 2945-2950
-
-
Aragón, J.J.1
Sols, A.2
-
5
-
-
51849086743
-
Flux distribution of metabolic networks close to optimal biomass production
-
G. Bianconi Flux distribution of metabolic networks close to optimal biomass production Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 2008 78 035101
-
(2008)
Phys. Rev. e Stat. Nonlin. Soft Matter Phys.
, vol.78
, pp. 035101
-
-
Bianconi, G.1
-
7
-
-
33646570847
-
Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections
-
P. K. Chong C. S. Gan T. K. Pham P. C. Wright Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections J. Proteome Res. 2006 5 5 1232 1240
-
(2006)
J. Proteome Res.
, vol.5
, Issue.5
, pp. 1232-1240
-
-
Chong, P.K.1
Gan, C.S.2
Pham, T.K.3
Wright, P.C.4
-
8
-
-
30344456708
-
Inferring meaningful pathways in weighted metabolic networks
-
D. Croes F. Couche S. J. Wodak J. van Helden Inferring meaningful pathways in weighted metabolic networks J. Mol. Biol. 2006 356 1 222 236
-
(2006)
J. Mol. Biol.
, vol.356
, Issue.1
, pp. 222-236
-
-
Croes, D.1
Couche, F.2
Wodak, S.J.3
Van Helden, J.4
-
9
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
M. B. Elowitz S. Leibler A synthetic oscillatory network of transcriptional regulators Nature 2000 403 6767 335 338
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
12
-
-
33847340190
-
Technical experimental and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ)
-
C. S. Gan P. K. Chong T. K. Pham P. C. Wright Technical experimental and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ) J. Proteome Res. 2007 6 2 821 827
-
(2007)
J. Proteome Res.
, vol.6
, Issue.2
, pp. 821-827
-
-
Gan, C.S.1
Chong, P.K.2
Pham, T.K.3
Wright, P.C.4
-
13
-
-
0025923478
-
Mathematical analysis of enzymic reaction systems using optimization principles
-
R. Heinrich S. Schuster H. G. Holzhütter Mathematical analysis of enzymic reaction systems using optimization principles Eur. J. Biochem. 1991 201 1 1 21
-
(1991)
Eur. J. Biochem.
, vol.201
, Issue.1
, pp. 1-21
-
-
Heinrich, R.1
Schuster, S.2
Holzhütter, H.G.3
-
14
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
M. Kanehisa M. Araki S. Goto M. Hattori M. Hirakawa M. Itoh T. Katayama S. Kawashima S. Okuda T. Tokimatsu Y. Yamanishi KEGG for linking genomes to life and the environment Nucleic Acids Res. 2008 36 D480 484
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 480-484
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
15
-
-
0344845100
-
Proteomic analysis of the benzoate degradation pathway in Acinetobacter sp. KS-1
-
S.-I. Kim S.-Y. Song K.-W. Kim E.-M. Ho K.-H. Oh Proteomic analysis of the benzoate degradation pathway in Acinetobacter sp. KS-1 Res. Microbiol. 2003 154 10 687 703
-
(2003)
Res. Microbiol.
, vol.154
, Issue.10
, pp. 687-703
-
-
Kim, S.-I.1
Song, S.-Y.2
Kim, K.-W.3
Ho, E.-M.4
Oh, K.-H.5
-
16
-
-
67651030513
-
Biosynthesis of plant isoprenoids: Perspectives for microbial engineering
-
J. Kirby J. D. Keasling Biosynthesis of plant isoprenoids: perspectives for microbial engineering Annu. Rev. Plant. Biol. 2009 60 335 355
-
(2009)
Annu. Rev. Plant. Biol.
, vol.60
, pp. 335-355
-
-
Kirby, J.1
Keasling, J.D.2
-
17
-
-
37249034083
-
Coupling and coordination in gene: Expression processes a systems biology view
-
S. Komili P. A. Silver Coupling and coordination in gene: expression processes a systems biology view Nat. Rev. Genet. 2008 9 1 38 48
-
(2008)
Nat. Rev. Genet.
, vol.9
, Issue.1
, pp. 38-48
-
-
Komili, S.1
Silver, P.A.2
-
18
-
-
33744986051
-
Proteome changes after metabolic engineering to enhance aerobic mineralization of cis-1,2-dichloroethylene
-
J. Lee L. Cao S. Y. Ow M. E. Barrios-Llerena W. Chen T. K. Wood P. C. Wright Proteome changes after metabolic engineering to enhance aerobic mineralization of cis-1,2-dichloroethylene J. Proteome Res. 2006 5 6 1388 1397
-
(2006)
J. Proteome Res.
, vol.5
, Issue.6
, pp. 1388-1397
-
-
Lee, J.1
Cao, L.2
Ow, S.Y.3
Barrios-Llerena, M.E.4
Chen, W.5
Wood, T.K.6
Wright, P.C.7
-
19
-
-
28544442417
-
Synthetic biology: Engineering Escherichia coli to see light
-
A. Levskaya A. A. Chevalier J. J. Tabor Z. B. Simpson L. A. Lavery M. Levy E. A. Davidson A. Scouras A. D. Ellington E. M. Marcotte C. A. Voigt Synthetic biology: engineering Escherichia coli to see light Nature 2005 438 7067 441 442
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 441-442
-
-
Levskaya, A.1
Chevalier, A.A.2
Tabor, J.J.3
Simpson, Z.B.4
Lavery, L.A.5
Levy, M.6
Davidson, E.A.7
Scouras, A.8
Ellington, A.D.9
Marcotte, E.M.10
Voigt, C.A.11
-
20
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
J. R. Newman S. Ghaemmaghami J. Ihmels D. K. Breslow M. Noble J. L. DeRisi J. S. Weissman Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise Nature 2006 441 7095 840 846
-
(2006)
Nature
, vol.441
, Issue.7095
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
Derisi, J.L.6
Weissman, J.S.7
-
22
-
-
56649116091
-
Identifying differentially expressed subnetworks with MMG
-
J. Noirel G. Sanguinetti P. C. Wright Identifying differentially expressed subnetworks with MMG Bioinformatics 2008 24 23 2792 2793
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2792-2793
-
-
Noirel, J.1
Sanguinetti, G.2
Wright, P.C.3
-
24
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
S. E. Ong M. Mann Mass spectrometry-based proteomics turns quantitative Nat. Chem. Biol. 2005 1 5 252 262
-
(2005)
Nat. Chem. Biol.
, vol.1
, Issue.5
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
25
-
-
60849087991
-
Quantitative overview of N2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics
-
S. Y. Ow J. Noirel T. Cardona A. Taton P. Lindblad K. Stensjö P. C. Wright Quantitative overview of N2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics J. Proteome Res. 2009 8 1 187 198
-
(2009)
J. Proteome Res.
, vol.8
, Issue.1
, pp. 187-198
-
-
Ow, S.Y.1
Noirel, J.2
Cardona, T.3
Taton, A.4
Lindblad, P.5
Stensjö, K.6
Wright, P.C.7
-
26
-
-
67349147419
-
Current trends in high throughput proteomics in cyanobacteria
-
S. Y. Ow P. C. Wright Current trends in high throughput proteomics in cyanobacteria FEBS Lett. 2009 583 11 1744 1752
-
(2009)
FEBS Lett.
, vol.583
, Issue.11
, pp. 1744-1752
-
-
Ow, S.Y.1
Wright, P.C.2
-
28
-
-
14844321287
-
Synthetic modular systems-reverse engineering of signal transduction
-
T. Pawson R. Linding Synthetic modular systems-reverse engineering of signal transduction FEBS Lett. 2005 579 8 1808 1814
-
(2005)
FEBS Lett.
, vol.579
, Issue.8
, pp. 1808-1814
-
-
Pawson, T.1
Linding, R.2
-
29
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
N. D. Price J. L. Reed B. Ø. Palsson Genome-scale models of microbial cells: evaluating the consequences of constraints Nat. Rev. Microbiol. 2004 2 11 886 897
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, Issue.11
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson B.Ø3
-
30
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
D.-K. Ro E. M. Paradise M. Ouellet K. J. Fisher K. L. Newman J. M. Ndungu K. A. Ho R. A. Eachus T. S. Ham J. Kirby M. C. Y. Chang S. T. Withers Y. Shiba R. Sarpong J. D. Keasling Production of the antimalarial drug precursor artemisinic acid in engineered yeast Nature 2006 440 7086 940 943
-
(2006)
Nature
, vol.440
, Issue.7086
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
31
-
-
54949140438
-
DESHARKY: Automatic design of metabolic pathways for optimal cell growth
-
G. Rodrigo J. Carrera K. J. Prather A. Jaramillo DESHARKY: automatic design of metabolic pathways for optimal cell growth Bioinformatics 2008 24 21 2554 2556
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2554-2556
-
-
Rodrigo, G.1
Carrera, J.2
Prather, K.J.3
Jaramillo, A.4
-
32
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
P. L. Ross Y. N. Huang J. N. Marchese B. Williamson K. Parker S. Hattan N. Khainovski S. Pillai S. Dey S. Daniels S. Purkayastha P. Juhasz S. Martin M. Bartlet-Jones F. He A. Jacobson D. J. Pappin Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol. Cell. Proteomics 2004 3 12 1154 1169
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
33
-
-
30644465547
-
The comprehensive updated regulatory network of Escherichia coli K-12
-
H. Salgado A. Santos-Zavaleta S. Gama-Castro M. Peralta-Gil M. I. Peñaloza-Spínola A. Martínez-Antonio P. D. Karp J. Collado-Vides The comprehensive updated regulatory network of Escherichia coli K-12 BMC Bioinformatics 2006 7 5
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 5
-
-
Salgado, H.1
Santos-Zavaleta, A.2
Gama-Castro, S.3
Peralta-Gil, M.4
Peñaloza-Spínola, M.I.5
Martínez-Antonio, A.6
Karp, P.D.7
Collado-Vides, J.8
-
34
-
-
41949107946
-
MMG: A probabilistic tool to identify submodules of metabolic pathways
-
G. Sanguinetti J. Noirel P. C. Wright MMG: a probabilistic tool to identify submodules of metabolic pathways Bioinformatics 2008 24 8 1078 1084
-
(2008)
Bioinformatics
, vol.24
, Issue.8
, pp. 1078-1084
-
-
Sanguinetti, G.1
Noirel, J.2
Wright, P.C.3
-
35
-
-
28544440364
-
Reconstruction of genetic circuits
-
D. Sprinzak M. B. Elowitz Reconstruction of genetic circuits Nature 2005 438 443 448
-
(2005)
Nature
, vol.438
, pp. 443-448
-
-
Sprinzak, D.1
Elowitz, M.B.2
-
36
-
-
4644268555
-
Mathematical models in microbial systems biology
-
J. Stelling Mathematical models in microbial systems biology Curr. Opin. Microbiol. 2004 7 5 513 518
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, Issue.5
, pp. 513-518
-
-
Stelling, J.1
-
38
-
-
46849090495
-
Robust, tunable biological oscillations from interlinked positive and negative feedback loops
-
T. Y.-C. Tsai Y. S. Choi W. Ma J. R. Pomerening C. Tang J. E. Ferrell, Jr Robust, tunable biological oscillations from interlinked positive and negative feedback loops Science 2008 321 5885 126 129
-
(2008)
Science
, vol.321
, Issue.5885
, pp. 126-129
-
-
Tsai, T.Y.-C.1
Choi, Y.S.2
Ma, W.3
Pomerening, J.R.4
Tang, C.5
Ferrell Jr, J.E.6
-
39
-
-
0037453060
-
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
-
M. P. Washburn A. Koller G. Oshiro R. R. Ulaszek D. Plouffe C. Deciu E. Winzeler J. R. Yates Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae Proc. Natl. Acad. Sci. U. S. A. 2003 100 3107 3112
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 3107-3112
-
-
Washburn, M.P.1
Koller, A.2
Oshiro, G.3
Ulaszek, R.R.4
Plouffe, D.5
Deciu, C.6
Winzeler, E.7
Yates, J.R.8
-
40
-
-
58149124123
-
An enzyme-centric approach for modelling non-linear biological complexity
-
C. R. Yang An enzyme-centric approach for modelling non-linear biological complexity BMC Syst. Biol. 2008 2 70
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 70
-
-
Yang, C.R.1
|