메뉴 건너뛰기




Volumn 80, Issue , 2012, Pages 273-279

Docking and QSAR study on the binding interactions between polycyclic aromatic hydrocarbons and estrogen receptor

Author keywords

Applicability domain; Estrogenic activity; Molecular docking; Polycyclic aromatic hydrocarbons (PAHs); Quantitative structure activity relationship (QSAR)

Indexed keywords

ESTROGEN RECEPTOR ALPHA; POLYCYCLIC AROMATIC HYDROCARBON DERIVATIVE;

EID: 84860524710     PISSN: 01476513     EISSN: 10902414     Source Type: Journal    
DOI: 10.1016/j.ecoenv.2012.03.009     Document Type: Article
Times cited : (40)

References (46)
  • 1
    • 61849169468 scopus 로고    scopus 로고
    • Identification of xenoestrogens in food additives by an integrated in silico and in vitro approach
    • Amadasi A., Mozzarelli A., Meda C., Maggi A., Cozzini P. Identification of xenoestrogens in food additives by an integrated in silico and in vitro approach. Chem. Res. Toxicol. 2009, 22:52-63.
    • (2009) Chem. Res. Toxicol. , vol.22 , pp. 52-63
    • Amadasi, A.1    Mozzarelli, A.2    Meda, C.3    Maggi, A.4    Cozzini, P.5
  • 2
    • 10844219583 scopus 로고    scopus 로고
    • Consensus kNN QSAR: A versatile method for predicting the estrogenic activity of organic compounds in silico. A comparative study with five estrogen receptors and a large, diverse set of ligands
    • Asikainen A.H., Ruuskanen J., Tuppurainen K.A. Consensus kNN QSAR: A versatile method for predicting the estrogenic activity of organic compounds in silico. A comparative study with five estrogen receptors and a large, diverse set of ligands. Environ. Sci. Technol. 2004, 38:6724-6729.
    • (2004) Environ. Sci. Technol. , vol.38 , pp. 6724-6729
    • Asikainen, A.H.1    Ruuskanen, J.2    Tuppurainen, K.A.3
  • 4
    • 57449086143 scopus 로고    scopus 로고
    • Exploring interactions of endocrine-disrupting compounds with different conformations of the human estrogen receptor alpha ligand binding domain: a molecular docking study
    • Celik L., Lund J.D.D., Schiott B. Exploring interactions of endocrine-disrupting compounds with different conformations of the human estrogen receptor alpha ligand binding domain: a molecular docking study. Chem. Res. Toxicol. 2008, 21:2195-2206.
    • (2008) Chem. Res. Toxicol. , vol.21 , pp. 2195-2206
    • Celik, L.1    Lund, J.D.D.2    Schiott, B.3
  • 5
    • 0034079918 scopus 로고    scopus 로고
    • Activity of benzo[a]pyrene and its hydroxylated metabolites in an estrogen receptor-alpha reporter gene assay
    • Charles G.D., Bartels M.J., Zacharewski T.R., Gollapudi B.B., Freshour N.L., Carney E.W. Activity of benzo[a]pyrene and its hydroxylated metabolites in an estrogen receptor-alpha reporter gene assay. Toxicol. Sci. 2000, 55:320-326.
    • (2000) Toxicol. Sci. , vol.55 , pp. 320-326
    • Charles, G.D.1    Bartels, M.J.2    Zacharewski, T.R.3    Gollapudi, B.B.4    Freshour, N.L.5    Carney, E.W.6
  • 6
    • 45749140080 scopus 로고    scopus 로고
    • Progress and perspectives of quantitative structure-activity relationships used for ecological risk assessment of toxic organic compounds
    • Chen J.W., Li X.H., Yu H.Y., Wang Y., Qiao X.L. Progress and perspectives of quantitative structure-activity relationships used for ecological risk assessment of toxic organic compounds. Sci. China Series B-Chem. 2008, 51:593-606.
    • (2008) Sci. China Series B-Chem. , vol.51 , pp. 593-606
    • Chen, J.W.1    Li, X.H.2    Yu, H.Y.3    Wang, Y.4    Qiao, X.L.5
  • 7
    • 33645456147 scopus 로고    scopus 로고
    • Quantitative structure-activity relationship based quantification of the impacts of enzyme-substrate binding on rates of peroxidase-mediated reactions of estrogenic phenolic chemicals
    • Colosi L.M., Huang Q.G., Weber W.J. Quantitative structure-activity relationship based quantification of the impacts of enzyme-substrate binding on rates of peroxidase-mediated reactions of estrogenic phenolic chemicals. J. Am. Chem. Soc. 2006, 128:4041-4047.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 4041-4047
    • Colosi, L.M.1    Huang, Q.G.2    Weber, W.J.3
  • 8
    • 79957878735 scopus 로고    scopus 로고
    • Ubiquitous net volatilization of polycyclic aromatic hydrocarbons from soils and parameters influencing their soil-air partitioning
    • Dachs J., Cabrerizo A., Moeckel C., Ojeda M.J., Caballero G., Barcelo D., Jones K.C. Ubiquitous net volatilization of polycyclic aromatic hydrocarbons from soils and parameters influencing their soil-air partitioning. Environ. Sci. Technol. 2011, 45:4740-4747.
    • (2011) Environ. Sci. Technol. , vol.45 , pp. 4740-4747
    • Dachs, J.1    Cabrerizo, A.2    Moeckel, C.3    Ojeda, M.J.4    Caballero, G.5    Barcelo, D.6    Jones, K.C.7
  • 9
    • 52049099370 scopus 로고    scopus 로고
    • 3D-QSAR and molecular docking studies of selective agonists for the thyroid hormone receptor beta
    • Du J., Qin J., Liu H.X., Yao X.J. 3D-QSAR and molecular docking studies of selective agonists for the thyroid hormone receptor beta. J. Mol. Graph. Model. 2008, 27:95-104.
    • (2008) J. Mol. Graph. Model. , vol.27 , pp. 95-104
    • Du, J.1    Qin, J.2    Liu, H.X.3    Yao, X.J.4
  • 11
    • 0043132440 scopus 로고    scopus 로고
    • Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs
    • Eriksson L., Jaworska J., Worth A.P., Cronin M.T.D., McDowell R.M., Gramatica P. Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs. Environ. Health Perspect. 2003, 111:1361-1375.
    • (2003) Environ. Health Perspect. , vol.111 , pp. 1361-1375
    • Eriksson, L.1    Jaworska, J.2    Worth, A.P.3    Cronin, M.T.D.4    McDowell, R.M.5    Gramatica, P.6
  • 12
    • 62549113413 scopus 로고    scopus 로고
    • QSAR model for predicting radical scavenging activity of di(hetero)arylamines derivatives of benzo[b]thiophenes
    • Ferreira I.C.F.R., Abreu R.M.V., Queiroz M.J.R.P. QSAR model for predicting radical scavenging activity of di(hetero)arylamines derivatives of benzo[b]thiophenes. Eur. J. Med. Chem. 2009, 44:1952-1958.
    • (2009) Eur. J. Med. Chem. , vol.44 , pp. 1952-1958
    • Ferreira, I.C.F.R.1    Abreu, R.M.V.2    Queiroz, M.J.R.P.3
  • 15
    • 61349150217 scopus 로고    scopus 로고
    • Optimization and validation of the MCF-7 focus assay for estrogen modulators
    • Gierthy J.F., Arcaro K.F., Li A., Silber P., Lloyd S., Yang Y. Optimization and validation of the MCF-7 focus assay for estrogen modulators. Toxicol. Sci. 2003, 72:154-155.
    • (2003) Toxicol. Sci. , vol.72 , pp. 154-155
    • Gierthy, J.F.1    Arcaro, K.F.2    Li, A.3    Silber, P.4    Lloyd, S.5    Yang, Y.6
  • 17
    • 35148815288 scopus 로고    scopus 로고
    • Estrogenic/Antiestrogenic activities of polycyclic aromatic hydrocarbons and their monohydroxylated derivatives by yeast two-hybrid assay
    • Hayakawa K., Onoda Y., Tachikawa C., Hosoi S., Yoshita M., Chung S.W., Kizu R., Toriba A., Kameda T., Tang N. Estrogenic/Antiestrogenic activities of polycyclic aromatic hydrocarbons and their monohydroxylated derivatives by yeast two-hybrid assay. J. Health Sci. 2007, 53:562-570.
    • (2007) J. Health Sci. , vol.53 , pp. 562-570
    • Hayakawa, K.1    Onoda, Y.2    Tachikawa, C.3    Hosoi, S.4    Yoshita, M.5    Chung, S.W.6    Kizu, R.7    Toriba, A.8    Kameda, T.9    Tang, N.10
  • 18
    • 0034811778 scopus 로고    scopus 로고
    • The OECD program to validate the rat uterotrophic bioassay to screen compounds for in vivo estrogenic responses: Phase 1
    • Kanno J., Onyon L., Haseman J., Fenner-Crisp P., Ashby J., Owens W. The OECD program to validate the rat uterotrophic bioassay to screen compounds for in vivo estrogenic responses: Phase 1. Environ. Health Perspect. 2001, 109:785-794.
    • (2001) Environ. Health Perspect. , vol.109 , pp. 785-794
    • Kanno, J.1    Onyon, L.2    Haseman, J.3    Fenner-Crisp, P.4    Ashby, J.5    Owens, W.6
  • 19
    • 9544252937 scopus 로고    scopus 로고
    • Research needs for the risk assessment of health and environmental effects of endocrine disruptors: A report of the US EPA-sponsored workshop
    • Kavlock R.J., Daston G.P., DeRosa C., FennerCrisp P., Gray L.E., Kaattari S. Research needs for the risk assessment of health and environmental effects of endocrine disruptors: A report of the US EPA-sponsored workshop. Environ. Health Perspect. 1996, 104:715-740.
    • (1996) Environ. Health Perspect. , vol.104 , pp. 715-740
    • Kavlock, R.J.1    Daston, G.P.2    DeRosa, C.3    FennerCrisp, P.4    Gray, L.E.5    Kaattari, S.6
  • 20
    • 61349184332 scopus 로고    scopus 로고
    • Determination and prediction of xenoestrogens by recombinant yeast-based assay and QSAR
    • Li F., Chen J.W., Wang Z., Li J., Qiao X.L. Determination and prediction of xenoestrogens by recombinant yeast-based assay and QSAR. Chemosphere 2009, 74:1152-1157.
    • (2009) Chemosphere , vol.74 , pp. 1152-1157
    • Li, F.1    Chen, J.W.2    Wang, Z.3    Li, J.4    Qiao, X.L.5
  • 21
    • 77955685634 scopus 로고    scopus 로고
    • Estrogenic activity of anthraquinone derivatives: in vitro and in silico studies
    • Li F., Li X.H., Shao J.P., Chi P., Chen J.W., Wang Z.J. Estrogenic activity of anthraquinone derivatives: in vitro and in silico studies. Chem. Res. Toxicol. 2010, 23:1349-1355.
    • (2010) Chem. Res. Toxicol. , vol.23 , pp. 1349-1355
    • Li, F.1    Li, X.H.2    Shao, J.P.3    Chi, P.4    Chen, J.W.5    Wang, Z.J.6
  • 22
    • 77951758435 scopus 로고    scopus 로고
    • Hormone activity of hydroxylated polybrominated diphenyl ethers on human thyroid receptor-beta: in vitro and in silico investigations
    • Li F., Xie Q., Li X.H., Li N., Chi P., Chen J.W., Wang Z.J., Hao C. Hormone activity of hydroxylated polybrominated diphenyl ethers on human thyroid receptor-beta: in vitro and in silico investigations. Environ. Health Perspect. 2010, 118:602-606.
    • (2010) Environ. Health Perspect. , vol.118 , pp. 602-606
    • Li, F.1    Xie, Q.2    Li, X.H.3    Li, N.4    Chi, P.5    Chen, J.W.6    Wang, Z.J.7    Hao, C.8
  • 23
    • 33845277149 scopus 로고    scopus 로고
    • QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles
    • Liu H.X., Papa E., Gramatica P. QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles. Chem. Res. Toxicol. 2006, 19:1540-1548.
    • (2006) Chem. Res. Toxicol. , vol.19 , pp. 1540-1548
    • Liu, H.X.1    Papa, E.2    Gramatica, P.3
  • 24
    • 28944454142 scopus 로고    scopus 로고
    • Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders
    • Marini F., Roncaglioni A., Novic M. Variable selection and interpretation in structure-affinity correlation modeling of estrogen receptor binders. J. Chem. Inf. Model. 2005, 45:1507-1519.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 1507-1519
    • Marini, F.1    Roncaglioni, A.2    Novic, M.3
  • 25
    • 51849109110 scopus 로고    scopus 로고
    • Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: Simulations using a novel multipoint steered molecular dynamics approach
    • Martinez L., Polikarpov I., Skaf M.S. Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: Simulations using a novel multipoint steered molecular dynamics approach. J. Phy. Chem. B 2008, 112:10741-10751.
    • (2008) J. Phy. Chem. B , vol.112 , pp. 10741-10751
    • Martinez, L.1    Polikarpov, I.2    Skaf, M.S.3
  • 29
    • 0031026046 scopus 로고    scopus 로고
    • Structural features of alkylphenolic chemicals associated with estrogenic activity
    • Routledge E.J., Sumpter J.P. Structural features of alkylphenolic chemicals associated with estrogenic activity. J. Biol. Chem. 1997, 272:3280-3288.
    • (1997) J. Biol. Chem. , vol.272 , pp. 3280-3288
    • Routledge, E.J.1    Sumpter, J.P.2
  • 30
    • 33747364217 scopus 로고    scopus 로고
    • Cluster analysis and two-dimensional quantitative structure-activity relationship (2D-QSAR) of Pseudomonas aeruginosa deacetylase LpxC inhibitors
    • Roy N., Kadam R.U. Cluster analysis and two-dimensional quantitative structure-activity relationship (2D-QSAR) of Pseudomonas aeruginosa deacetylase LpxC inhibitors. Bioorg. Med. Chem. Lett. 2006, 16:5136-5143.
    • (2006) Bioorg. Med. Chem. Lett. , vol.16 , pp. 5136-5143
    • Roy, N.1    Kadam, R.U.2
  • 31
    • 57549095014 scopus 로고    scopus 로고
    • External validation and prediction employing the predictive squared correlation coefficient-test set activity mean vs training set activity mean
    • Schüürmann G., Ebert R.U., Chen J.W., Wang B., Kuhne R. External validation and prediction employing the predictive squared correlation coefficient-test set activity mean vs training set activity mean. J. Chem. Inf. Model. 2008, 48:2140-2145.
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 2140-2145
    • Schüürmann, G.1    Ebert, R.U.2    Chen, J.W.3    Wang, B.4    Kuhne, R.5
  • 32
    • 3543032770 scopus 로고    scopus 로고
    • Estrogenicity of selected biphenyls evaluated using a recombinant yeast assay
    • Schultz T.W., Kraut D.H., Sayler G.S., Layton A.C. Estrogenicity of selected biphenyls evaluated using a recombinant yeast assay. Environ. Toxicol. Chem. 1998, 17:1727-1729.
    • (1998) Environ. Toxicol. Chem. , vol.17 , pp. 1727-1729
    • Schultz, T.W.1    Kraut, D.H.2    Sayler, G.S.3    Layton, A.C.4
  • 33
    • 0036525966 scopus 로고    scopus 로고
    • Xenoestrogenic gene exression: Structural features of active polycyclic aromatic hydrocarbons
    • Schultz T.W., Sinks G.D. Xenoestrogenic gene exression: Structural features of active polycyclic aromatic hydrocarbons. Environ. Toxicol. Chem. 2002, 21:783-786.
    • (2002) Environ. Toxicol. Chem. , vol.21 , pp. 783-786
    • Schultz, T.W.1    Sinks, G.D.2
  • 35
    • 0037837211 scopus 로고    scopus 로고
    • Development of biologically active compounds by combining 3D QSAR and structure-based design methods
    • Sippl W. Development of biologically active compounds by combining 3D QSAR and structure-based design methods. J. Comput. Aid. Mol. Des. 2002, 16:825-830.
    • (2002) J. Comput. Aid. Mol. Des. , vol.16 , pp. 825-830
    • Sippl, W.1
  • 36
    • 13944264638 scopus 로고    scopus 로고
    • Three-dimensional structure-activity relationships of nonsteroidal ligands in complex with androgen receptor ligand-binding domain
    • Soderholm A.A., Lehtovuori P.T., Nyronen T.H. Three-dimensional structure-activity relationships of nonsteroidal ligands in complex with androgen receptor ligand-binding domain. J. Med. Chem. 2005, 48:917-925.
    • (2005) J. Med. Chem. , vol.48 , pp. 917-925
    • Soderholm, A.A.1    Lehtovuori, P.T.2    Nyronen, T.H.3
  • 39
    • 0030569549 scopus 로고    scopus 로고
    • The anti-estrogenic activity of selected polynuclear aromatic hydrocarbons in yeast expressing human estrogen receptor
    • Tran D.Q., Ide C.F., McLachlan J.A., Arnold S.F. The anti-estrogenic activity of selected polynuclear aromatic hydrocarbons in yeast expressing human estrogen receptor. Biochem. Bioph. Res. Co. 1996, 229:102-108.
    • (1996) Biochem. Bioph. Res. Co. , vol.229 , pp. 102-108
    • Tran, D.Q.1    Ide, C.F.2    McLachlan, J.A.3    Arnold, S.F.4
  • 40
    • 0038724207 scopus 로고    scopus 로고
    • The importance of being earnest: Validation is the absolute essential for successful application and interpretation of QSPR models
    • Tropsha A., Gramatica P., Gombar V.K. The importance of being earnest: Validation is the absolute essential for successful application and interpretation of QSPR models. QSAR Comb. Sci. 2003, 22:69-77.
    • (2003) QSAR Comb. Sci. , vol.22 , pp. 69-77
    • Tropsha, A.1    Gramatica, P.2    Gombar, V.K.3
  • 42
    • 0030685054 scopus 로고    scopus 로고
    • Determination of polycyclic aromatic hydrocarbons (PAH) and their metabolites in blood, feces, and urine of rats orally exposed to PAH contaminated soils
    • vanSchooten F.J., Moonen E.J.C., vanderWal L., Levels P., Kleinjans J.C.S. Determination of polycyclic aromatic hydrocarbons (PAH) and their metabolites in blood, feces, and urine of rats orally exposed to PAH contaminated soils. Arch. Environ. Con. Toxicol. 1997, 33:317-322.
    • (1997) Arch. Environ. Con. Toxicol. , vol.33 , pp. 317-322
    • vanSchooten, F.J.1    Moonen, E.J.C.2    vanderWal, L.3    Levels, P.4    Kleinjans, J.C.S.5
  • 43
    • 0042371622 scopus 로고    scopus 로고
    • Monitoring human occupational and environmental exposures to polycyclic aromatic compounds
    • Watson W.P., Brandt H.C.A. Monitoring human occupational and environmental exposures to polycyclic aromatic compounds. Ann. Occup. Hyg. 2003, 47:349-378.
    • (2003) Ann. Occup. Hyg. , vol.47 , pp. 349-378
    • Watson, W.P.1    Brandt, H.C.A.2
  • 45
    • 0041781898 scopus 로고    scopus 로고
    • Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm
    • Wu G.S., Robertson D.H., Brooks C.L., Vieth M. Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm. J. Comput. Chem. 2003, 24:1549-1562.
    • (2003) J. Comput. Chem. , vol.24 , pp. 1549-1562
    • Wu, G.S.1    Robertson, D.H.2    Brooks, C.L.3    Vieth, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.