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Volumn 48, Issue 11, 2008, Pages 2140-2145

External validation and prediction employing the predictive squared correlation coefficient - Test set activity mean vs training set activity mean

Author keywords

[No Author keywords available]

Indexed keywords

FORECASTING; REGRESSION ANALYSIS;

EID: 57549095014     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci800253u     Document Type: Article
Times cited : (484)

References (31)
  • 1
    • 0001363692 scopus 로고
    • BC(DEF) Parameters. 2. An Empirical Structure-Based Scheme for the Prediction of Some Physical Properties
    • Cramer, R. D., III. BC(DEF) Parameters. 2. An Empirical Structure-Based Scheme for the Prediction of Some Physical Properties. J. Am. Chem. Soc. 1980, 102, 1849-1859.
    • (1980) J. Am. Chem. Soc , vol.102 , pp. 1849-1859
    • Cramer III, R.D.1
  • 2
    • 84987100711 scopus 로고
    • Crossvalidation, Bootstrapping, and Partial Least Squares Compared with Multiple Linear Regression in Conventional QSAR Studies
    • Cramer, R. D., III; Bunce, J. D.; Patterson, D. E.; Frank, I. E. Crossvalidation, Bootstrapping, and Partial Least Squares Compared with Multiple Linear Regression in Conventional QSAR Studies. Quant. Struct.-Act. Relat. 1988, 7, 18-25.
    • (1988) Quant. Struct.-Act. Relat , vol.7 , pp. 18-25
    • Cramer III, R.D.1    Bunce, J.D.2    Patterson, D.E.3    Frank, I.E.4
  • 3
    • 84950461478 scopus 로고
    • Estimating the error rate of a prediction rule: Improvement on cross-validation
    • Efron, B. Estimating the error rate of a prediction rule: Improvement on cross-validation. J. Am. Statist. Assoc. 1983, 78, 316-331.
    • (1983) J. Am. Statist. Assoc , vol.78 , pp. 316-331
    • Efron, B.1
  • 4
    • 84923818429 scopus 로고
    • Better bootstrap confidence intervals
    • Efron, B. Better bootstrap confidence intervals. J. Am. Statist. Assoc. 1987, 82, 171-200.
    • (1987) J. Am. Statist. Assoc , vol.82 , pp. 171-200
    • Efron, B.1
  • 5
    • 84988120965 scopus 로고
    • Causality in Structure-Activity Studies
    • Klopman, G.; Kalos, A. N. Causality in Structure-Activity Studies. J. Comput. Chem. 1985, 6, 429-506.
    • (1985) J. Comput. Chem , vol.6 , pp. 429-506
    • Klopman, G.1    Kalos, A.N.2
  • 6
    • 84987083710 scopus 로고
    • Validation of QSAR's
    • Wold, S. Validation of QSAR's. Quant. Struct.-Act. Relat. 1991, 10, 191-193.
    • (1991) Quant. Struct.-Act. Relat , vol.10 , pp. 191-193
    • Wold, S.1
  • 8
    • 33847060108 scopus 로고    scopus 로고
    • The quality of QSAR models: Problems and solutions
    • Kolossov, E.; Stanforth, R. The quality of QSAR models: problems and solutions. SAR QSAR Environ. Res. 2007, 18, 89-100.
    • (2007) SAR QSAR Environ. Res , vol.18 , pp. 89-100
    • Kolossov, E.1    Stanforth, R.2
  • 9
    • 10044263240 scopus 로고    scopus 로고
    • Similarity to molecules in the training set is a good discriminator for prediction accuracy in QSAR
    • Sheridan, R.; Feuston, R. P.; Maiorov, V. N.; Kearsley, S. Similarity to molecules in the training set is a good discriminator for prediction accuracy in QSAR. J. Chem. Inf. Comput. Sci. 2004, 44, 1912-1928.
    • (2004) J. Chem. Inf. Comput. Sci , vol.44 , pp. 1912-1928
    • Sheridan, R.1    Feuston, R.P.2    Maiorov, V.N.3    Kearsley, S.4
  • 10
    • 85192674015 scopus 로고    scopus 로고
    • Mekenyan, O.; Nikolova, N.; Schmieder, P.; Veith, G. COREPA-M: A multidimensional formulation of COREPA. QSAR Comb. Sci. 2004, 23, 5-18.
    • Mekenyan, O.; Nikolova, N.; Schmieder, P.; Veith, G. COREPA-M: A multidimensional formulation of COREPA. QSAR Comb. Sci. 2004, 23, 5-18.
  • 11
    • 27744590591 scopus 로고    scopus 로고
    • QSAR Applicability Domain Estimation by Projection of the Training Set in Descriptor Space: A Review
    • Jaworska, J.; Nikolova-Jeliazkova, N.; Aldenberg, T. QSAR Applicability Domain Estimation by Projection of the Training Set in Descriptor Space: A Review. ATLA 2005, 33, 445-459.
    • (2005) ATLA , vol.33 , pp. 445-459
    • Jaworska, J.1    Nikolova-Jeliazkova, N.2    Aldenberg, T.3
  • 12
    • 13844321935 scopus 로고    scopus 로고
    • Determining the Validity of a QSAR Model - A Classification Approach
    • Guha, R.; Jurs, P. C. Determining the Validity of a QSAR Model - A Classification Approach. J. Chem. Inf. Comput. Sci. 2005, 45, 65-73.
    • (2005) J. Chem. Inf. Comput. Sci , vol.45 , pp. 65-73
    • Guha, R.1    Jurs, P.C.2
  • 13
    • 57549104497 scopus 로고    scopus 로고
    • Kühne, R.; Kleint, F.; Ebert, R.-U.; Schüürmann, G. Calculation of Compound Properties Using Experimental Data From Sufficiently Similar Chemicals. In Software Development in Chemistry 10, Proceedings of the 10th workshop Computer in Chemistry, Hochfilzen, Austria, 1995; Gasteiger, J., Ed.; PROserv Springer Produktionsgesellschaft: Berlin, Germany, 1996; pp 125-134.
    • Kühne, R.; Kleint, F.; Ebert, R.-U.; Schüürmann, G. Calculation of Compound Properties Using Experimental Data From Sufficiently Similar Chemicals. In Software Development in Chemistry 10, Proceedings of the 10th workshop "Computer in Chemistry", Hochfilzen, Austria, 1995; Gasteiger, J., Ed.; PROserv Springer Produktionsgesellschaft: Berlin, Germany, 1996; pp 125-134.
  • 15
    • 33646271333 scopus 로고    scopus 로고
    • Model selection based on structural similarity - Method description and application to water solubility prediction
    • Kühne, R.; Ebert, R.-U.; Schüürmann, G. Model selection based on structural similarity - Method description and application to water solubility prediction. J. Chem. Inf. Model. 2006, 46, 636-641.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 636-641
    • Kühne, R.1    Ebert, R.-U.2    Schüürmann, G.3
  • 16
    • 34250674562 scopus 로고    scopus 로고
    • Estimation of compartmental half-lives of organic compounds - structural similarity vs. EPI-suite
    • Kühne, R.; Ebert, R.-U.; Schüürmann, G. Estimation of compartmental half-lives of organic compounds - structural similarity vs. EPI-suite. QSAR Comb. Sci. 2007, 26, 542-549.
    • (2007) QSAR Comb. Sci , vol.26 , pp. 542-549
    • Kühne, R.1    Ebert, R.-U.2    Schüürmann, G.3
  • 17
    • 57549111820 scopus 로고    scopus 로고
    • Regulation (EC) No 1907/2006 of the European Parliament and of the Council of December 18, 2006 concerning the Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH), establishing an European Chemicals Agency, amending Directive 1999/45/EC and repealing Council Regulation (EEC) No 793/93 and Commission Regulation (EC) No 1488/94 as well as Council Directive 76/769/EEC and Commission Directives 91/155/EEC, 93/67/EEC, 93/105/EC and 2000/21/EC. Official J. Eur. Union, L 306, 2006, 49 (December 30), 1-849.
    • Regulation (EC) No 1907/2006 of the European Parliament and of the Council of December 18, 2006 concerning the Registration, Evaluation, Authorisation and Restriction of Chemicals (REACH), establishing an European Chemicals Agency, amending Directive 1999/45/EC and repealing Council Regulation (EEC) No 793/93 and Commission Regulation (EC) No 1488/94 as well as Council Directive 76/769/EEC and Commission Directives 91/155/EEC, 93/67/EEC, 93/105/EC and 2000/21/EC. Official J. Eur. Union, L 306, 2006, 49 (December 30), 1-849.
  • 18
    • 16844379228 scopus 로고    scopus 로고
    • Practical considerations on the use of predictive models for regulatory purposes
    • Tunkel, J.; Mayo, K.; Austin, C.; Hickerson, A.; Howard, P. Practical considerations on the use of predictive models for regulatory purposes. Environ. Sci. Technol. 2005, 39, 2188-2199.
    • (2005) Environ. Sci. Technol , vol.39 , pp. 2188-2199
    • Tunkel, J.1    Mayo, K.2    Austin, C.3    Hickerson, A.4    Howard, P.5
  • 19
    • 0016029778 scopus 로고
    • The Relationship Between Variable Selection and Data Augmentation and a Method for Prediction
    • Allen, D. M. The Relationship Between Variable Selection and Data Augmentation and a Method for Prediction. Technometrics 1974, 16, 125-127.
    • (1974) Technometrics , vol.16 , pp. 125-127
    • Allen, D.M.1
  • 20
    • 0038724207 scopus 로고    scopus 로고
    • The Importance of Being Earnest: Validation is the Absolute Essential for Successful Application and Interpretation of QSPR Models
    • Tropsha, A.; Gramatica, P; Gombar, V. K. The Importance of Being Earnest: Validation is the Absolute Essential for Successful Application and Interpretation of QSPR Models. QSAR Comb. Sci. 2003, 22, 69-77.
    • (2003) QSAR Comb. Sci , vol.22 , pp. 69-77
    • Tropsha, A.1    Gramatica, P.2    Gombar, V.K.3
  • 21
    • 57549108834 scopus 로고    scopus 로고
    • Organisation for Economic Co-operation and Development. Guidance document on the validation of (quantitative) structure-activity relationship [(Q)SAR] models. OECD Series on Testing and Assessment 69. OECD Document ENV/JM/MONO(2007)2, 2007, pp 55 (paragraph no. 198) and 65 (Table 5.7).
    • Organisation for Economic Co-operation and Development. Guidance document on the validation of (quantitative) structure-activity relationship [(Q)SAR] models. OECD Series on Testing and Assessment 69. OECD Document ENV/JM/MONO(2007)2, 2007, pp 55 (paragraph no. 198) and 65 (Table 5.7).
  • 22
    • 33751088535 scopus 로고    scopus 로고
    • Prediction of the sorption of organic compounds into soil organic matter from molecular structure
    • Schüürmann, G.; Ebert, R.-U.; Kühne, R. Prediction of the sorption of organic compounds into soil organic matter from molecular structure. Environ. Sci. Technol. 2006, 40, 7005-7011.
    • (2006) Environ. Sci. Technol , vol.40 , pp. 7005-7011
    • Schüürmann, G.1    Ebert, R.-U.2    Kühne, R.3
  • 23
    • 0023324373 scopus 로고
    • On the prediction of soil sorption coefficients of organic pollutants from molecular structure: Application of molecular topology model
    • Sabljić, A. On the prediction of soil sorption coefficients of organic pollutants from molecular structure: Application of molecular topology model. Environ. Sci. Technol. 1987, 21, 358-366.
    • (1987) Environ. Sci. Technol , vol.21 , pp. 358-366
    • Sabljić, A.1
  • 24
    • 13844270669 scopus 로고    scopus 로고
    • Polyparameter linear free energy relationships for estimating the equilibrium partition of organic compounds between water and the natural organic matter in soils and sediments
    • Nguyen, T. H.; Goss, K. U.; Ball, P. W. Polyparameter linear free energy relationships for estimating the equilibrium partition of organic compounds between water and the natural organic matter in soils and sediments. Environ. Sci. Technol. 2005, 39, 913-924.
    • (2005) Environ. Sci. Technol , vol.39 , pp. 913-924
    • Nguyen, T.H.1    Goss, K.U.2    Ball, P.W.3
  • 25
    • 0028990049 scopus 로고
    • Group contribution methods to estimate water solubility of organic chemicals
    • Kühne, R.; Ebert, R.-U.; Kleint, F.; Schmidt, G.; Schüürmann, G. Group contribution methods to estimate water solubility of organic chemicals. Chemosphere 1995, 30, 2061-2077.
    • (1995) Chemosphere , vol.30 , pp. 2061-2077
    • Kühne, R.1    Ebert, R.-U.2    Kleint, F.3    Schmidt, G.4    Schüürmann, G.5
  • 26
    • 57549089586 scopus 로고    scopus 로고
    • Schüürmann, G., Ebert, R.-U.; Nendza, M.; Dearden, J. C.; Paschke, A.; Kühne, R. Prediction of Fate-Related Compound Properties. In Risk Assessment of Chemicals. An Introduction, 2nd ed.; van Leeuwen, K., Vermeire, T., Eds.; Springer Science: Dordrecht, The Netherlands, 2007; pp 375-426.
    • Schüürmann, G., Ebert, R.-U.; Nendza, M.; Dearden, J. C.; Paschke, A.; Kühne, R. Prediction of Fate-Related Compound Properties. In Risk Assessment of Chemicals. An Introduction, 2nd ed.; van Leeuwen, K., Vermeire, T., Eds.; Springer Science: Dordrecht, The Netherlands, 2007; pp 375-426.
  • 27
    • 0028046665 scopus 로고
    • Variable Selection in QSAR Studies. I. An Evolutionary Algorithm
    • Kubinyi, H. Variable Selection in QSAR Studies. I. An Evolutionary Algorithm. Quant. Struct.-Act. Relat 1994, 13, 285-294.
    • (1994) Quant. Struct.-Act. Relat , vol.13 , pp. 285-294
    • Kubinyi, H.1
  • 28
    • 0029018197 scopus 로고
    • Use of comparative molecular field analysis and cluster analysis in series design
    • Novellino, E.; Fattorusso, C.; Greco, G. Use of comparative molecular field analysis and cluster analysis in series design. Pharm. Acta Helv. 1995, 70, 149-154.
    • (1995) Pharm. Acta Helv , vol.70 , pp. 149-154
    • Novellino, E.1    Fattorusso, C.2    Greco, G.3
  • 29
    • 0001910906 scopus 로고    scopus 로고
    • and domain made variable selection in 3D QSAR applications
    • Norinder, U. Single and domain made variable selection in 3D QSAR applications. J. Chemom. 1996, 10, 95-105.
    • (1996) J. Chemom , vol.10 , pp. 95-105
    • Norinder, U.S.1
  • 30
    • 0032474873 scopus 로고    scopus 로고
    • Three-dimensional quantitative similarity-activity relationships (3D QSAR) from SEAL similarity matrices
    • Kubinyi, H.; Hamprecht, H.; Mietzner, T. Three-dimensional quantitative similarity-activity relationships (3D QSAR) from SEAL similarity matrices. J. Med. Chem. 1998, 41, 2553-2564.
    • (1998) J. Med. Chem , vol.41 , pp. 2553-2564
    • Kubinyi, H.1    Hamprecht, H.2    Mietzner, T.3
  • 31
    • 21144474350 scopus 로고
    • Linear model selection by cross-validation
    • Shao, J. Linear model selection by cross-validation. J. Am. Stat. Assoc. 1993, 88, 486-494.
    • (1993) J. Am. Stat. Assoc , vol.88 , pp. 486-494
    • Shao, J.1


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