메뉴 건너뛰기




Volumn 870, Issue , 2012, Pages 187-207

Polymer translocation through an electrically tunable nanopore in a multilayered semiconductor membrane

Author keywords

Brownian dynamics; DNA sequencing; Multilayered semiconductor membrane; Poisson equation; Solid state nanopore

Indexed keywords

POLYMER; SILICON DIOXIDE; SINGLE STRANDED DNA;

EID: 84860515209     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-773-6_11     Document Type: Article
Times cited : (3)

References (49)
  • 2
    • 84871282614 scopus 로고    scopus 로고
    • URL: http://www.genome.gov/12513210
  • 5
    • 25844474523 scopus 로고    scopus 로고
    • Slowing DNA translocation in a solid-state nanopore
    • DOI 10.1021/nl051063o
    • Fologea D, Uplinger J, Thomas B, McNabb D, Li J (2005) Slowing DNA translocation in a solid-state nanopore. Nano Lett 5:1734-1737 (Pubitemid 41396156)
    • (2005) Nano Letters , vol.5 , Issue.9 , pp. 1734-1737
    • Fologea, D.1    Uplinger, J.2    Thomas, B.3    McNabb, D.S.4    Li, J.5
  • 7
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson M, Branton D, Kasianowicz J, Brandin E, Deamer D (1999) Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys J 77:3227-3233
    • (1999) Biophys J , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.3    Brandin, E.4    Deamer, D.5
  • 8
    • 16244372752 scopus 로고    scopus 로고
    • Single protein pores containing molecular adapters at high temperatures
    • DOI 10.1002/anie.200461885
    • Kang X, Gu L, Cheley S, Bayley H (2005) Single protein pores containing molecular adapters at high temperatures. Angew Chem Int Ed Engl 44:1495-1499 (Pubitemid 40460041)
    • (2005) Angewandte Chemie - International Edition , vol.44 , Issue.10 , pp. 1495-1499
    • Kang, X.-F.1    Gu, L.-Q.2    Cheley, S.3    Bayley, H.4
  • 10
    • 0141955818 scopus 로고    scopus 로고
    • DNA molecules and confi gurations in a solid-state nanopore microscope
    • Li J, Gershow M, Stein D, Brandin E, Golovchenko J (2003) DNA molecules and confi gurations in a solid-state nanopore microscope. Nat Mater 2:611-615
    • (2003) Nat Mater , vol.2 , pp. 611-615
    • Li, J.1    Gershow, M.2    Stein, D.3    Brandin, E.4    Golovchenko, J.5
  • 12
    • 0042285088 scopus 로고    scopus 로고
    • Fabrication of solid-state nanopores with single-nanometre precision
    • Storm A, Chen J, Ling X, Zandbergen H, Dekker C (2008) Fabrication of solid-state nanopores with single-nanometre precision. Nat Mater 2:537-540
    • (2008) Nat Mater , vol.2 , pp. 537-540
    • Storm, A.1    Chen, J.2    Ling, X.3    Zandbergen, H.4    Dekker, C.5
  • 13
    • 31044443423 scopus 로고    scopus 로고
    • Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor
    • DOI 10.1088/0957-4484/17/3/002, PII S0957448406104869
    • Gracheva ME, Xiong A, Aksimentiev A, Schulten K, Timp G, Leburton J-P (2006) Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor. Nanotechnology 17:622-633 (Pubitemid 43121666)
    • (2006) Nanotechnology , vol.17 , Issue.3 , pp. 622-633
    • Gracheva, M.E.1    Xiong, A.2    Aksimentiev, A.3    Schulten, K.4    Timp, G.5    Leburton, J.-P.6
  • 14
    • 33947110955 scopus 로고    scopus 로고
    • Electrolytic charge inversion at the liquid-solid interface in a nanopore in a doped semiconductor membrane
    • Gracheva ME, Leburton J-P (2007) Electrolytic charge inversion at the liquid-solid interface in a nanopore in a doped semiconductor membrane. Nanotechnology 18:145704-145710
    • (2007) Nanotechnology , vol.18 , pp. 145704-145710
    • Gracheva, M.E.1    Leburton, J.-P.2
  • 15
    • 34547371450 scopus 로고    scopus 로고
    • P-n semiconductor membrane for electrically tunable ion current rectification and filtering
    • DOI 10.1021/nl0707104
    • Gracheva ME, Vidal J, Leburton J-P (2007) p-n semiconductor membrane for electrically tunable ion current rectifi cation and fi ltering. Nano Lett 7:1717-1722 (Pubitemid 47140451)
    • (2007) Nano Letters , vol.7 , Issue.6 , pp. 1717-1722
    • Gracheva, M.E.1    Vidal, J.2    Leburton, J.-P.3
  • 16
    • 31044442252 scopus 로고    scopus 로고
    • Protein transport through gold-coated, charged nanopores: Effects of applied voltage
    • DOI 10.1016/j.cplett.2005.11.029, PII S000926140501746X
    • Chun K-Y, Mafe S, Ramirez P, Stroeve P (2006) Protein transport through gold-coated, charged nanopores: effects of applied voltage. Chem Phys Lett 418:561-564 (Pubitemid 43121317)
    • (2006) Chemical Physics Letters , vol.418 , Issue.4-6 , pp. 561-564
    • Chun, K.-Y.1    Mafe, S.2    Ramirez, P.3    Stroeve, P.4
  • 17
    • 33645513029 scopus 로고    scopus 로고
    • Fieldeffect control of protein transport in a nanofl uidic transistor circuit
    • Karnik R, Castelino K, Majumdar A (2006) Fieldeffect control of protein transport in a nanofl uidic transistor circuit. Appl Phys Lett 88:1-3
    • (2006) Appl Phys Lett , vol.88 , pp. 1-3
    • Karnik, R.1    Castelino, K.2    Majumdar, A.3
  • 19
    • 0034177819 scopus 로고    scopus 로고
    • Nanopores and nucleic acids: Prospects for ultrarapid sequencing
    • DOI 10.1016/S0167-7799(00)01426-8, PII S0167779900014268
    • Deamer D, Akeson M (2000) Nanopores and nucleic acids: prospects for ultrarapid sequencing. Trends Biotechnol 18:147-151 (Pubitemid 30171332)
    • (2000) Trends in Biotechnology , vol.18 , Issue.4 , pp. 147-151
    • Deamer, D.W.1    Akeson, M.2
  • 20
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • DOI 10.1038/85696
    • Vercoutere W, Winters-Hilt S, Olsen H, Deamer D, Haussler D, Akeson M (2001) Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat Biotechnol 19:248-252 (Pubitemid 32220566)
    • (2001) Nature Biotechnology , vol.19 , Issue.3 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 21
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • DOI 10.1103/PhysRevLett.86.3435
    • Meller A, Nivon L, Branton D (2001) Voltagedriven DNA translocations through a nanopore. Phys Rev Lett 86:3435-3438 (Pubitemid 32380654)
    • (2001) Physical Review Letters , vol.86 , Issue.15 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 22
    • 0036674122 scopus 로고    scopus 로고
    • Single molecule measurements of DNA transport through a nanopore
    • DOI 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H
    • Meller A, Branton D (2002) Single molecule measurements of DNA transport through a nanopore. Electrophoresis 23:2583-2591 (Pubitemid 35023698)
    • (2002) Electrophoresis , vol.23 , Issue.16 , pp. 2583-2591
    • Meller, A.1    Branton, D.2
  • 23
    • 0036797062 scopus 로고    scopus 로고
    • Characterization of nucleic acids by nanopore analysis
    • Deamer D, Branton D (2002) Characterization of nucleic acids by nanopore analysis. Acc Chem Res 35:817-825
    • (2002) Acc Chem Res , vol.35 , pp. 817-825
    • Deamer, D.1    Branton, D.2
  • 24
    • 16244377077 scopus 로고    scopus 로고
    • Electronic signature of DNA nucleotides via transverse transport
    • DOI 10.1021/nl048289w
    • Zwolak M, Ventra MD (2005) Electronic signature of DNA nucleotides via transverse transport. Nano Lett 5:421-424 (Pubitemid 40449709)
    • (2005) Nano Letters , vol.5 , Issue.3 , pp. 421-424
    • Zwolak, M.1    Di Ventra, M.2
  • 25
    • 33746625243 scopus 로고    scopus 로고
    • Electrical signatures of single-stranded DNA with single base mutations in a nanopore capacitor
    • DOI 10.1088/0957-4484/17/13/014, PII S0957448406208365, 014
    • Gracheva ME, Aksimentiev A, Leburton J-P (2006) Electrical signatures of single-stranded DNA with single base mutations in a nanopore capacitor. Nanotechnology 17:3160-3165 (Pubitemid 44149642)
    • (2006) Nanotechnology , vol.17 , Issue.13 , pp. 3160-3165
    • Gracheva, M.E.1    Aksimentiev, A.2    Leburton, J.-P.3
  • 26
    • 0037855911 scopus 로고    scopus 로고
    • Dynamics of polynucleotide transport through nanometre-scale pores
    • Meller A (2003) Dynamics of polynucleotide transport through nanometre-scale pores. J Phys Condens Matter 15:R581-R607
    • (2003) J Phys Condens Matter , vol.15
    • Meller, A.1
  • 27
    • 34248399955 scopus 로고    scopus 로고
    • Solid-state nanopore channels with DNA selectivity
    • DOI 10.1038/nnano.2007.78, PII NNANO200778
    • Iqbal SM, Akin D, Bashir R (2007) Solid-state nanopore channels with DNA selectivity. Nature 2:243-248 (Pubitemid 46739815)
    • (2007) Nature Nanotechnology , vol.2 , Issue.4 , pp. 243-248
    • Iqbal, S.M.1    Akin, D.2    Bashir, R.3
  • 28
    • 34547190841 scopus 로고    scopus 로고
    • Chemically modifi ed solid-state nanopores
    • Wanunu M, Meller A (2007) Chemically modifi ed solid-state nanopores. Nano Lett 7:1580-1585
    • (2007) Nano Lett , vol.7 , pp. 1580-1585
    • Wanunu, M.1    Meller, A.2
  • 30
    • 33847796142 scopus 로고    scopus 로고
    • Multi-nanopore force spectroscopy for DNA analysis
    • DOI 10.1529/biophysj.106.094060
    • Tropini C, Marziali A (2007) Multi-nanopore force spectroscopy for DNA analysis. Biophys J 92:1632-1637 (Pubitemid 46393474)
    • (2007) Biophysical Journal , vol.92 , Issue.5 , pp. 1632-1637
    • Tropini, C.1    Marziali, A.2
  • 31
    • 58049221304 scopus 로고    scopus 로고
    • Multilayered semiconductor membranes for nanopore ionic conductance modulation
    • Gracheva ME, Melnikov DV, Leburton J-P (2008) Multilayered semiconductor membranes for nanopore ionic conductance modulation. ACS Nano 2:2349-2355
    • (2008) ACS Nano , vol.2 , pp. 2349-2355
    • Gracheva, M.E.1    Melnikov, D.V.2    Leburton, J.-P.3
  • 33
    • 33847269755 scopus 로고    scopus 로고
    • Electrically tunable solid-state silicon nanopore ion filter
    • DOI 10.1007/s11671-006-9031-7
    • Vidal J, Gracheva ME, Leburton J-P (2007) Electrically tunable solid-state silicon nanopore ion fi lter. Nanoscale Res Lett 2:61-68 (Pubitemid 46325967)
    • (2007) Nanoscale Research Letters , vol.2 , Issue.2 , pp. 61-68
    • Vidal, J.1    Gracheva, M.E.2    Leburton, J.-P.3
  • 34
    • 0030777710 scopus 로고    scopus 로고
    • The dielectric properties of water within model transbilayer pores
    • Sansom MS, Smith GR, Adcock C, Biggin PC (1997) The dielectric properties of water within model transbilayer pores. Biophys J 73: 2404-2415 (Pubitemid 27471449)
    • (1997) Biophysical Journal , vol.73 , Issue.5 , pp. 2404-2415
    • Sansom, M.S.P.1    Smith, G.R.2    Adcock, C.3    Biggin, P.C.4
  • 39
    • 62249141027 scopus 로고    scopus 로고
    • Brownian dynamics simulations of single-stranded DNA hairpins
    • Kenward M, Dorfman KD (2009) Brownian dynamics simulations of single-stranded DNA hairpins. J Chem Phys 130:095101
    • (2009) J Chem Phys , vol.130 , pp. 095101
    • Kenward, M.1    Dorfman, K.D.2
  • 40
    • 33645765294 scopus 로고    scopus 로고
    • Simulation of polymer translocation through protein channels
    • Muthukumar M, Kong CY (2006) Simulation of polymer translocation through protein channels. Proc Natl Acad Sci USA 103:5273-5278
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 5273-5278
    • Muthukumar, M.1    Kong, C.Y.2
  • 41
    • 0036672774 scopus 로고    scopus 로고
    • Modeling of polynucleotide translocation through protein pores and nanotubes
    • DOI 10.1002/1522-2683(200208)23:16<2697::AID-ELPS2697>3.0.CO;2-M
    • Kong CY, Muthukumar M (2002) Modeling of polynucleotide translocation through protein pores and nanotubes. Electrophoresis 23:2697-2703 (Pubitemid 35023711)
    • (2002) Electrophoresis , vol.23 , Issue.16 , pp. 2697-2703
    • Kong, C.Y.1    Muthukumar, M.2
  • 43
    • 70449435310 scopus 로고    scopus 로고
    • Numerical simulation of conformational variability in biopolymer translocation through wide nanopores
    • Fyta M, Melchionna S, Bernaschi M, Kaxiras E, Succi S (2009) Numerical simulation of conformational variability in biopolymer translocation through wide nanopores. J Stat Mech 6:06009
    • (2009) J Stat Mech , vol.6 , pp. 06009
    • Fyta, M.1    Melchionna, S.2    Bernaschi, M.3    Kaxiras, E.4    Succi, S.5
  • 44
    • 77951619023 scopus 로고    scopus 로고
    • Out-ofequilibrium characteristics of a forced translocating chain through a nanopore
    • Bhattacharya A, Binder K (2010) Out-ofequilibrium characteristics of a forced translocating chain through a nanopore. Phys Rev E Stat Nonlin Soft Matter Phys 81:041804
    • (2010) Phys Rev e Stat Nonlin Soft Matter Phys , vol.81 , pp. 041804
    • Bhattacharya, A.1    Binder, K.2
  • 45
    • 79952651703 scopus 로고    scopus 로고
    • Simulation of ionic current through the nanopore in a doublelayered semiconductor membrane
    • Nikolaev A, Gracheva M (2011) Simulation of ionic current through the nanopore in a doublelayered semiconductor membrane. Nanotechnology 22:165202
    • (2011) Nanotechnology , vol.22 , pp. 165202
    • Nikolaev, A.1    Gracheva, M.2
  • 48
    • 77955447352 scopus 로고    scopus 로고
    • Theory for polymer analysis using nanopore-based single-molecule mass spectrometry
    • Reiner JE, Kasianowicz JJ, Nablo BJ, Robertson JWF (2010) Theory for polymer analysis using nanopore-based single-molecule mass spectrometry. Proc Natl Acad Sci USA 107:12080-12085
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 12080-12085
    • Reiner, J.E.1    Kasianowicz, J.J.2    Nablo, B.J.3    Jwf, R.4
  • 49
    • 0034033431 scopus 로고    scopus 로고
    • Tests of continuum theories as models of ion channels. II. Poisson- Nernst-Planck theory versus brownian dynamics
    • Corry B, Kuyucak S, Chung S (2000) Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus Brownian dynamics. Biophys J 78:2364-2381 (Pubitemid 30313795)
    • (2000) Biophysical Journal , vol.78 , Issue.5 , pp. 2364-2381
    • Corry, B.1    Kuyucak, S.2    Chung, S.-H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.