메뉴 건너뛰기




Volumn 78, Issue 5, 2000, Pages 2364-2381

Tests of continuum theories as models of ion channels. II. Poisson- Nernst-Planck theory versus brownian dynamics

Author keywords

[No Author keywords available]

Indexed keywords

ION CHANNEL; POTASSIUM CHANNEL;

EID: 0034033431     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76781-6     Document Type: Article
Times cited : (295)

References (39)
  • 2
    • 0028347833 scopus 로고
    • Brownian dynamics study of a multiply occupied cation channel: Application to understanding permeation in potassium channel
    • Bek, S., and E. Jakobsson. 1994. Brownian dynamics study of a multiply occupied cation channel: application to understanding permeation in potassium channel. Biophys. J. 66:1028-1038.
    • (1994) Biophys. J. , vol.66 , pp. 1028-1038
    • Bek, S.1    Jakobsson, E.2
  • 4
    • 0031030225 scopus 로고    scopus 로고
    • Permeation through an open channel: Poisson-Nernst-Planck theory of a synthetic ionic channel
    • Chen, D., J. Lear, and R. S. Eisenberg. 1997. Permeation through an open channel: Poisson-Nernst-Planck theory of a synthetic ionic channel. Biophys. J. 72:97-116.
    • (1997) Biophys. J. , vol.72 , pp. 97-116
    • Chen, D.1    Lear, J.2    Eisenberg, R.S.3
  • 5
    • 0032981778 scopus 로고    scopus 로고
    • Selectivity and permeation in calcium release channel of cardiac muscle: Alkali metal ions
    • Chen, D. P., L. Xu, A. Tripathy, G. Meissner, and B. Eisenberg. 1999. Selectivity and permeation in calcium release channel of cardiac muscle: alkali metal ions. Biophys. J. 76:1346-1366.
    • (1999) Biophys. J. , vol.76 , pp. 1346-1366
    • Chen, D.P.1    Xu, L.2    Tripathy, A.3    Meissner, G.4    Eisenberg, B.5
  • 6
    • 0032708637 scopus 로고    scopus 로고
    • Permeation of ions across the potassium channel: Brownian dynamics studies
    • Chung, S. H., T. W. Allen, M. Hoyles, and S. Kuyucak. 1999. Permeation of ions across the potassium channel: Brownian dynamics studies. Biophys. J. 77:2517-2533.
    • (1999) Biophys. J. , vol.77 , pp. 2517-2533
    • Chung, S.H.1    Allen, T.W.2    Hoyles, M.3    Kuyucak, S.4
  • 7
    • 0031870447 scopus 로고    scopus 로고
    • Study of ionic currents across a model membrane channel using Brownian dynamics
    • Chung, S.H., M. Hoyles, T. W. Allen, and S. Kuyucak. 1998. Study of ionic currents across a model membrane channel using Brownian dynamics. Biophys. J. 75:793-809.
    • (1998) Biophys. J. , vol.75 , pp. 793-809
    • Chung, S.H.1    Hoyles, M.2    Allen, T.W.3    Kuyucak, S.4
  • 10
    • 0032827130 scopus 로고    scopus 로고
    • Test of Poisson-Nernst-Planck theory in ion channels
    • Corry, B., S. Kuyucak, and S. H. Chung. 1999. Test of Poisson-Nernst-Planck theory in ion channels. J. Gen. Physiol. 114: 597-599.
    • (1999) J. Gen. Physiol. , vol.114 , pp. 597-599
    • Corry, B.1    Kuyucak, S.2    Chung, S.H.3
  • 12
    • 0029876860 scopus 로고    scopus 로고
    • Computing the field in proteins and channels
    • Eisenberg, R. S. 1996. Computing the field in proteins and channels. J. Membr. Biol. 150:1-25.
    • (1996) J. Membr. Biol. , vol.150 , pp. 1-25
    • Eisenberg, R.S.1
  • 13
    • 0033199195 scopus 로고    scopus 로고
    • From structure to function in open ionic channels
    • Eisenberg, R. S. 1999. From structure to function in open ionic channels. J. Membr. Biol. 171:1-24.
    • (1999) J. Membr. Biol. , vol.171 , pp. 1-24
    • Eisenberg, R.S.1
  • 14
    • 0016560160 scopus 로고
    • Access resistance of a small circular pore
    • Hall, J. 1975. Access resistance of a small circular pore. J. Gen. Physiol. 66:531-532.
    • (1975) J. Gen. Physiol. , vol.66 , pp. 531-532
    • Hall, J.1
  • 16
    • 0029862941 scopus 로고    scopus 로고
    • Energy barrier presented to ions by the vestibule of the biological membrane channel
    • Hoyles, M., S. Kuyucak, and S. H. Chung. 1996. Energy barrier presented to ions by the vestibule of the biological membrane channel. Biophys. J. 70:1628-1642.
    • (1996) Biophys. J. , vol.70 , pp. 1628-1642
    • Hoyles, M.1    Kuyucak, S.2    Chung, S.H.3
  • 17
    • 0032158469 scopus 로고    scopus 로고
    • Computer simulation of ion conductance in membrane channels
    • Hoyles, M., S. Kuyucak, and S. H. Chung. 1998a. Computer simulation of ion conductance in membrane channels. Phys. Rev. E. 58:3654-3661.
    • (1998) Phys. Rev. E. , vol.58 , pp. 3654-3661
    • Hoyles, M.1    Kuyucak, S.2    Chung, S.H.3
  • 18
    • 0032297748 scopus 로고    scopus 로고
    • Solutions of Poisson's equation in channel-like geometries
    • Hoyles, M., S. Kuyucak, and S. H. Chung. 1998b. Solutions of Poisson's equation in channel-like geometries. Computer Phys. Commun. 115: 45-68.
    • (1998) Computer Phys. Commun. , vol.115 , pp. 45-68
    • Hoyles, M.1    Kuyucak, S.2    Chung, S.H.3
  • 19
    • 0023371196 scopus 로고
    • Stochastic theory of ion movement in channels with single-ion occupancy
    • Jakobsson, E., and S. W. Chiu. 1987. Stochastic theory of ion movement in channels with single-ion occupancy. Biophys. J. 52:33-45.
    • (1987) Biophys. J. , vol.52 , pp. 33-45
    • Jakobsson, E.1    Chiu, S.W.2
  • 20
    • 0033032906 scopus 로고    scopus 로고
    • A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel
    • Kurnikova, M. G., R. D. Coalson, P. Graf, and A. Nitzan. 1999. A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel. Biophys. J. 76:642-656.
    • (1999) Biophys. J. , vol.76 , pp. 642-656
    • Kurnikova, M.G.1    Coalson, R.D.2    Graf, P.3    Nitzan, A.4
  • 21
    • 0022522698 scopus 로고
    • Interpretation of biological ion channel flux data: Reaction-rate versus continuum theory
    • Levitt, D. G. 1986. Interpretation of biological ion channel flux data: reaction-rate versus continuum theory. Annu. Rev. Biophys. Biophys. Chem. 15:29-57.
    • (1986) Annu. Rev. Biophys. Biophys. Chem. , vol.15 , pp. 29-57
    • Levitt, D.G.1
  • 22
    • 0026011790 scopus 로고
    • General continuum theory for multiion channel. 1. Theory
    • Levitt, D. G. 1991a. General continuum theory for multiion channel. 1. Theory. Biophys. J. 59:271-277.
    • (1991) Biophys. J. , vol.59 , pp. 271-277
    • Levitt, D.G.1
  • 23
    • 0026078627 scopus 로고
    • General continuum theory for multiion channel. II. Application to acetylcholine channel
    • Levitt, D. G. 1991b. General continuum theory for multiion channel. II. Application to acetylcholine channel. Biophys. J. 59:278-288.
    • (1991) Biophys. J. , vol.59 , pp. 278-288
    • Levitt, D.G.1
  • 24
    • 0033010064 scopus 로고    scopus 로고
    • Modeling of ion channels
    • Levitt, D. G. 1999. Modeling of ion channels. J. Gen. Physiol. 113: 789-794.
    • (1999) J. Gen. Physiol. , vol.113 , pp. 789-794
    • Levitt, D.G.1
  • 25
    • 0002786541 scopus 로고    scopus 로고
    • Brownian dynamics study of ion transport in the vestibule of membrane channels
    • Li, S. C., M. Hoyles, S. Kuyucak, and S. H. Chung. 1998. Brownian dynamics study of ion transport in the vestibule of membrane channels. Biophys. J. 74:37-47.
    • (1998) Biophys. J. , vol.74 , pp. 37-47
    • Li, S.C.1    Hoyles, M.2    Kuyucak, S.3    Chung, S.H.4
  • 27
    • 0033011168 scopus 로고    scopus 로고
    • Calcium channel permeation: A field in flux
    • McClesky, E. W. 1999. Calcium channel permeation: a field in flux. J. Gen. Physiol. 113:765-772.
    • (1999) J. Gen. Physiol. , vol.113 , pp. 765-772
    • McClesky, E.W.1
  • 28
    • 0032970498 scopus 로고    scopus 로고
    • Ionic hopping defended
    • Miller, C. 1999. Ionic hopping defended. J. Gen. Physiol. 113:783-787.
    • (1999) J. Gen. Physiol. , vol.113 , pp. 783-787
    • Miller, C.1
  • 29
    • 0034106946 scopus 로고    scopus 로고
    • Tests of continuum theories as models of ion channels. I. Poisson-Boltzmann theory versus Brownian dynamics
    • Moy, G., B. Corry, S. Kuyucak, and S. H. Chung. 2000. Tests of continuum theories as models of ion channels. I. Poisson-Boltzmann theory versus Brownian dynamics. Biophys. J. 78:2349-2363.
    • (2000) Biophys. J. , vol.78 , pp. 2349-2363
    • Moy, G.1    Corry, B.2    Kuyucak, S.3    Chung, S.H.4
  • 31
  • 32
    • 0031682987 scopus 로고    scopus 로고
    • Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels
    • Nonner, W., and R. S. Eisenberg. 1998. Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels. Biophys. J. 75:1287-1305.
    • (1998) Biophys. J. , vol.75 , pp. 1287-1305
    • Nonner, W.1    Eisenberg, R.S.2
  • 33
    • 0024182338 scopus 로고
    • Ionic channels in ocular epithelia
    • T. Narahashi, editor. Plenum Press, New York
    • Rae, I. L., R. A. Levis, and R. S. Eisenberg. 1988. Ionic channels in ocular epithelia. In Ion Channels, Vol. 1. T. Narahashi, editor. Plenum Press, New York. 283-327.
    • (1988) Ion Channels , vol.1 , pp. 283-327
    • Rae, I.L.1    Levis, R.A.2    Eisenberg, R.S.3
  • 34
    • 0028321565 scopus 로고
    • Molecular dynamics simulations of the gramicidin channel
    • Roux, B., and M. Karplus. 1994. Molecular dynamics simulations of the gramicidin channel. Annu. Rev. Biophys. Biomol. Struct. 23:731-761.
    • (1994) Annu. Rev. Biophys. Biomol. Struct. , vol.23 , pp. 731-761
    • Roux, B.1    Karplus, M.2
  • 35
    • 0000244470 scopus 로고
    • Integral weak diffusion and diffusion approximations applied to ion transport through biological ion channels
    • Syganow, A., and E. von Kitzing. 1995. Integral weak diffusion and diffusion approximations applied to ion transport through biological ion channels. J. Phys. Chem. 99:12030-12040.
    • (1995) J. Phys. Chem. , vol.99 , pp. 12030-12040
    • Syganow, A.1    Von Kitzing, E.2
  • 36
    • 0033021781 scopus 로고    scopus 로고
    • (In)validity of the constant field and constant current assumptions in theories of ion transport
    • Syganow, A., and E. von Kitzing. 1999a. (In)validity of the constant field and constant current assumptions in theories of ion transport. Biophys. J. 76:768-781.
    • (1999) Biophys. J. , vol.76 , pp. 768-781
    • Syganow, A.1    Von Kitzing, E.2
  • 37
    • 0033061830 scopus 로고    scopus 로고
    • The drift approximation solves the Poisson, Nernst-Planck, and continuum equations in the limit of large external voltages
    • Syganow, A., and E. von Kitzing. 1999b. The drift approximation solves the Poisson, Nernst-Planck, and continuum equations in the limit of large external voltages. Eur. Biophys. J. 28:393-414.
    • (1999) Eur. Biophys. J. , vol.28 , pp. 393-414
    • Syganow, A.1    Von Kitzing, E.2
  • 39
    • 0004134186 scopus 로고    scopus 로고
    • MIT Press, Cambridge, MA
    • Weiss, T. F. 1996. Cellular Biophysics, Vols. 1, 2. MIT Press, Cambridge, MA.
    • (1996) Cellular Biophysics , vol.1-2
    • Weiss, T.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.